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Gene: Pianp (PILR alpha associated neural protein) Rattus norvegicus

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Symbol:

Pianp

Name:

PILR alpha associated neural protein

RGD ID:

1304952

Description:

Predicted to enable protein domain specific binding activity. Predicted to be involved in regulation of immune response. Predicted to act upstream of or within several processes, including brain development; glutamate secretion; and visual learning. Located in basolateral plasma membrane. Orthologous to human PIANP (PILR alpha associated neural protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl; 4,4'-sulfonyldiphenol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

hypothetical protein LOC312711; leda-1; liver endothelial differentiation-associated protein-1; LOC312711; paired immunoglobin-like type 2 receptor-associating neural protein; PANP; PILR alpha-associated neural protein; PILR-associating neural protein; RGD1304952; similar to RIKEN cDNA C530028O21 gene; uncharacterized protein C12orf53 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,482,678 - 159,491,085 (+)	NCBI		GRCr8
mRatBN7.2	4	157,796,425 - 157,804,842 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,798,808 - 157,804,842 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	164,027,754 - 164,033,788 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,810,676 - 159,816,710 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,447,038 - 158,453,072 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,508,862 - 157,517,676 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,511,642 - 157,517,669 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	224,529,480 - 224,535,514 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	161,117,892 - 161,123,926 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	161,362,827 - 161,368,860 (+)	NCBI
Celera	4	146,535,886 - 146,541,918 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pianp	Rat	Hyperphosphatemic Familial Tumoral Calcinosis 1		ISO	PIANP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Tumoral calcinosis more ...	ClinVar	PMID:25378588 and PMID:29389098
Pianp	Rat	lymphoproliferative syndrome 2		ISO	PIANP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Lymphoproliferative syndrome 2	ClinVar	PMID:28492532
Pianp	Rat	peroxisome biogenesis disorder 2B		ISO	PIANP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Peroxisome biogenesis disorder 2B	ClinVar	PMID:28492532
Pianp	Rat	Temtamy syndrome		ISO	PIANP (Homo sapiens)	8554872	ClinVar Annotator: match by term: Temtamy syndrome	ClinVar	PMID:28492532

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pianp	Rat	autism spectrum disorder		ISS	Pianp (Mus musculus)	13592920		MouseDO

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pianp	Rat	17beta-estradiol	decreases expression	ISO	Pianp (Mus musculus)	6480464	Estradiol results in decreased expression of PIANP mRNA	CTD	PMID:39298647
Pianp	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	Pianp (Mus musculus)	6480464	Tetrachlorodibenzodioxin affects the expression of PIANP mRNA	CTD	PMID:24680724
Pianp	Rat	2,3,7,8-tetrachlorodibenzodioxine	decreases expression	EXP		6480464	Tetrachlorodibenzodioxin results in decreased expression of PIANP mRNA	CTD	PMID:33387578
Pianp	Rat	3,3',4,4',5-pentachlorobiphenyl	decreases expression	EXP		6480464	3 more ...	CTD	PMID:23196670
Pianp	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Pianp (Mus musculus)	6480464	bisphenol S results in decreased expression of PIANP mRNA	CTD	PMID:39298647
Pianp	Rat	4,4'-sulfonyldiphenol	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of PIANP mRNA	CTD	PMID:36041667
Pianp	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of PIANP mRNA	CTD	PMID:24780913
Pianp	Rat	acrylamide	affects expression	EXP		6480464	Acrylamide affects the expression of PIANP mRNA	CTD	PMID:28959563
Pianp	Rat	acrylamide	decreases expression	ISO	PIANP (Homo sapiens)	6480464	Acrylamide results in decreased expression of PIANP mRNA	CTD	PMID:32763439
Pianp	Rat	aldehydo-D-glucose	multiple interactions	ISO	Pianp (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of PIANP mRNA	CTD	PMID:37567420
Pianp	Rat	atrazine	increases expression	ISO	PIANP (Homo sapiens)	6480464	Atrazine results in increased expression of PIANP mRNA	CTD	PMID:22378314
Pianp	Rat	atrazine	decreases expression	EXP		6480464	Atrazine results in decreased expression of PIANP mRNA	CTD	PMID:36841081
Pianp	Rat	benzo[a]pyrene	decreases expression	EXP		6480464	Benzo(a)pyrene results in decreased expression of PIANP mRNA	CTD	PMID:21839799
Pianp	Rat	benzo[a]pyrene	decreases methylation	ISO	PIANP (Homo sapiens)	6480464	Benzo(a)pyrene results in decreased methylation of PIANP promoter	CTD	PMID:27901495
Pianp	Rat	benzo[a]pyrene	affects methylation	ISO	PIANP (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of PIANP 5' UTR	CTD	PMID:27901495
Pianp	Rat	benzo[a]pyrene	decreases expression	ISO	Pianp (Mus musculus)	6480464	Benzo(a)pyrene results in decreased expression of PIANP mRNA	CTD	PMID:23735875
Pianp	Rat	benzo[b]fluoranthene	decreases expression	ISO	Pianp (Mus musculus)	6480464	benzo(b)fluoranthene results in decreased expression of PIANP mRNA	CTD	PMID:26377693
Pianp	Rat	bis(2-ethylhexyl) phthalate	decreases expression	ISO	PIANP (Homo sapiens)	6480464	Diethylhexyl Phthalate results in decreased expression of PIANP mRNA	CTD	PMID:31163220
Pianp	Rat	bisphenol A	affects expression	EXP		6480464	bisphenol A affects the expression of PIANP mRNA	CTD	PMID:25181051
Pianp	Rat	bisphenol A	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of PIANP mRNA	CTD	PMID:36041667
Pianp	Rat	bisphenol A	increases expression	ISO	Pianp (Mus musculus)	6480464	bisphenol A results in increased expression of PIANP mRNA	CTD	PMID:32156529
Pianp	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of PIANP mRNA	CTD	PMID:34947998
Pianp	Rat	bisphenol A	increases methylation	ISO	Pianp (Mus musculus)	6480464	bisphenol A results in increased methylation of PIANP promoter	CTD	PMID:27312807
Pianp	Rat	bisphenol A	increases expression	ISO	PIANP (Homo sapiens)	6480464	bisphenol A results in increased expression of PIANP mRNA	CTD	PMID:27685785
Pianp	Rat	bisphenol F	multiple interactions	EXP		6480464	[bisphenol A co-treated with bisphenol F co-treated with bisphenol S] results in increased expression of PIANP mRNA	CTD	PMID:36041667
Pianp	Rat	cadmium dichloride	increases expression	ISO	PIANP (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of PIANP mRNA	CTD	PMID:38382870
Pianp	Rat	chlordecone	multiple interactions	ISO	Pianp (Mus musculus)	6480464	Chlordecone promotes the reaction [Biomarkers metabolite binds to PIANP gene]	CTD	PMID:31084621
Pianp	Rat	chlorpyrifos	increases expression	ISO	Pianp (Mus musculus)	6480464	Chlorpyrifos results in increased expression of PIANP mRNA	CTD	PMID:37019170
Pianp	Rat	cocaine	affects expression	EXP		6480464	Cocaine affects the expression of PIANP mRNA	CTD	PMID:20187946
Pianp	Rat	D-glucose	multiple interactions	ISO	Pianp (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of PIANP mRNA	CTD	PMID:37567420
Pianp	Rat	dichloroacetic acid	decreases expression	ISO	Pianp (Mus musculus)	6480464	Dichloroacetic Acid results in decreased expression of PIANP mRNA	CTD	PMID:28962523
Pianp	Rat	diethylstilbestrol	decreases expression	EXP		6480464	Diethylstilbestrol results in decreased expression of PIANP mRNA	CTD	PMID:21658437
Pianp	Rat	diquat	decreases expression	ISO	Pianp (Mus musculus)	6480464	Diquat results in decreased expression of PIANP mRNA	CTD	PMID:36851058
Pianp	Rat	endosulfan	decreases expression	ISO	PIANP (Homo sapiens)	6480464	Endosulfan results in decreased expression of PIANP mRNA	CTD	PMID:26615145
Pianp	Rat	ethanol	affects splicing	ISO	Pianp (Mus musculus)	6480464	Ethanol affects the splicing of PIANP mRNA	CTD	PMID:30319688
Pianp	Rat	ethylparaben	decreases expression	ISO	PIANP (Homo sapiens)	6480464	ethyl-p-hydroxybenzoate results in decreased expression of PIANP mRNA	CTD	PMID:37690743
Pianp	Rat	fructose	multiple interactions	ISO	Pianp (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of PIANP mRNA	CTD	PMID:37567420
Pianp	Rat	glucose	multiple interactions	ISO	Pianp (Mus musculus)	6480464	[lard co-treated with Cholesterol and Dietary co-treated with Dietary Sucrose co-treated with Fructose co-treated with Glucose] results in increased expression of PIANP mRNA	CTD	PMID:37567420
Pianp	Rat	GW 4064	decreases expression	ISO	Pianp (Mus musculus)	6480464	GW 4064 results in decreased expression of PIANP mRNA	CTD	PMID:26655953
Pianp	Rat	isoflurane	decreases methylation	ISO	Pianp (Mus musculus)	6480464	Isoflurane results in decreased methylation of PIANP mRNA	CTD	PMID:35249202
Pianp	Rat	paracetamol	decreases expression	EXP		6480464	Acetaminophen results in decreased expression of PIANP mRNA	CTD	PMID:33387578
Pianp	Rat	PCB138	increases expression	EXP		6480464	2 more ...	CTD	PMID:23829299
Pianp	Rat	pentanal	increases expression	ISO	PIANP (Homo sapiens)	6480464	pentanal results in increased expression of PIANP mRNA	CTD	PMID:26079696
Pianp	Rat	perfluorohexanesulfonic acid	increases expression	ISO	Pianp (Mus musculus)	6480464	perfluorohexanesulfonic acid results in increased expression of PIANP mRNA	CTD	PMID:37995155
Pianp	Rat	propanal	increases expression	ISO	PIANP (Homo sapiens)	6480464	propionaldehyde results in increased expression of PIANP mRNA	CTD	PMID:26079696
Pianp	Rat	resveratrol	multiple interactions	ISO	PIANP (Homo sapiens)	6480464	[Plant Extracts co-treated with Resveratrol] results in decreased expression of PIANP mRNA	CTD	PMID:23557933
Pianp	Rat	silicon dioxide	decreases expression	ISO	PIANP (Homo sapiens)	6480464	Silicon Dioxide analog results in decreased expression of PIANP mRNA	CTD	PMID:25895662
Pianp	Rat	silver atom	decreases expression	ISO	Pianp (Mus musculus)	6480464	Silver results in decreased expression of PIANP mRNA	CTD	PMID:27131904
Pianp	Rat	silver atom	affects expression	ISO	Pianp (Mus musculus)	6480464	Silver affects the expression of PIANP mRNA	CTD	PMID:27131904
Pianp	Rat	silver(0)	decreases expression	ISO	Pianp (Mus musculus)	6480464	Silver results in decreased expression of PIANP mRNA	CTD	PMID:27131904
Pianp	Rat	silver(0)	affects expression	ISO	Pianp (Mus musculus)	6480464	Silver affects the expression of PIANP mRNA	CTD	PMID:27131904
Pianp	Rat	tetrachloromethane	decreases expression	EXP		6480464	Carbon Tetrachloride results in decreased expression of PIANP mRNA	CTD	PMID:31150632
Pianp	Rat	toluene	decreases expression	EXP		6480464	Toluene results in decreased expression of PIANP mRNA	CTD	PMID:22967744

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pianp	Rat	cerebellum development	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	cerebellum development	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	dentate gyrus development	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	dentate gyrus development	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	gamma-aminobutyric acid signaling pathway	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	gamma-aminobutyric acid signaling pathway	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	gene expression	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	gene expression	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	glutamate secretion	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	glutamate secretion	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	homeostasis of number of cells	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	homeostasis of number of cells	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	regulation of immune response	involved_in	IEA	InterPro:IPR039628	1600115	GO_REF:0000002	InterPro	GO_REF:0000002
Pianp	Rat	response to stress	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	response to stress	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	social behavior	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	social behavior	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	visual learning	acts_upstream_of_or_within	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Pianp	Rat	visual learning	acts_upstream_of_or_within	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pianp	Rat	basolateral plasma membrane	located_in	IDA		10047253	PMID:20578158	UniProt
Pianp	Rat	membrane	located_in	IEA	UniProtKB-KW:KW-0472	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Pianp	Rat	membrane	is_active_in	IBA	PANTHER:PTN002842680 and Pianp (Rattus norvegicus)	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Pianp	Rat	membrane	located_in	IEA	UniProtKB-SubCell:SL-0162	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Pianp	Rat	presynapse	is_active_in	ISO	Pianp (Mus musculus)	1624291	PMID:31511635	RGD	PMID:31511635
Pianp	Rat	presynapse	is_active_in	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Pianp	Rat	protein binding	enables	ISO	PIANP (Homo sapiens)	1624291	UniProtKB:P55061 more ...	RGD	PMID:32296183
Pianp	Rat	protein domain specific binding	enables	ISO	Pianp (Mus musculus)	1624291	PMID:30902970	RGD	PMID:30902970
Pianp	Rat	protein domain specific binding	enables	IEA	UniProtKB:Q6P1B3 and ensembl:ENSMUSP00000032479	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Liver sinusoidal endothelium: a microenvironment-dependent differentiation program in rat including the novel junctional protein liver endothelial differentiation-associated protein-1.	Geraud C, etal., Hepatology. 2010 Jul;52(1):313-26. doi: 10.1002/hep.23618.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Pianp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	159,482,678 - 159,491,085 (+)	NCBI		GRCr8
mRatBN7.2	4	157,796,425 - 157,804,842 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	157,798,808 - 157,804,842 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	164,027,754 - 164,033,788 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	159,810,676 - 159,816,710 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	158,447,038 - 158,453,072 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	157,508,862 - 157,517,676 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	157,511,642 - 157,517,669 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	224,529,480 - 224,535,514 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	161,117,892 - 161,123,926 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	161,362,827 - 161,368,860 (+)	NCBI
Celera	4	146,535,886 - 146,541,918 (+)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

PIANP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	6,692,178 - 6,700,815 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	6,693,791 - 6,700,815 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	6,802,957 - 6,809,981 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	6,673,218 - 6,680,073 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	8,419,980 - 8,426,835 (-)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	6,656,240 - 6,663,293 (-)	NCBI		HuRef
CHM1_1	12	6,801,938 - 6,808,990 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	6,704,146 - 6,711,170 (-)	NCBI		T2T-CHM13v2.0

Pianp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	124,973,683 - 124,980,059 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	124,973,657 - 124,980,059 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	124,996,720 - 125,003,096 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	124,996,694 - 125,003,096 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	124,946,738 - 124,953,114 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	124,962,339 - 124,968,713 (+)	NCBI		MGSCv36	mm8
Celera	6	126,665,975 - 126,672,405 (+)	NCBI		Celera
Cytogenetic Map	6	F2	NCBI
cM Map	6	59.17	NCBI

Pianp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	4,309,104 - 4,314,961 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	4,309,104 - 4,314,961 (-)	NCBI	ChiLan1.0	ChiLan1.0

PIANP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	12,255,275 - 12,263,929 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	12,252,053 - 12,260,663 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	6,824,377 - 6,832,971 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	6,740,668 - 6,748,741 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	6,742,251 - 6,748,741 (-)	Ensembl	panpan1.1		panPan2

PIANP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	38,339,720 - 38,342,900 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	38,341,011 - 38,343,572 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	8,270,865 - 8,277,502 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	38,692,129 - 38,698,766 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	38,691,954 - 38,698,766 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	38,565,760 - 38,572,397 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	38,607,282 - 38,613,915 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	7,749,789 - 7,756,425 (-)	NCBI		UU_Cfam_GSD_1.0

Pianp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	102,435,167 - 102,443,307 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936709	1,102,477 - 1,110,420 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936709	1,102,730 - 1,111,143 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PIANP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	63,992,685 - 63,999,438 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	63,992,618 - 63,999,435 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	66,427,563 - 66,551,455 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PIANP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	6,727,379 - 6,736,552 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	6,728,535 - 6,736,101 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	1,489,784 - 1,498,365 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pianp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624860	3,396,237 - 3,400,909 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624860	3,396,105 - 3,417,986 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Pianp
28 total Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
4	224533944	224533945	C	T	snv	BBDP/WorN (KNAW)	View more Information

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain	Variant Page
4	157516106	157516107	C	T	snv	BBDP/Wor (RGD)	View more Information

Predicted Target Of

	Summary Value
Count of predictions:	255
Count of miRNA genes:	145
Interacting mature miRNAs:	190
Transcripts:	ENSRNOT00000065846
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
1582237	Kidm34	Kidney mass QTL 34	4	0.0001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	4	148090542	168069246	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
631683	Bp116	Blood pressure QTL 116		0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	124303370	169303370	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	126395976	167139601	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	124778595	169778595	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
1581574	Eae20	Experimental allergic encephalomyelitis QTL 20	7.8		nervous system integrity trait (VT:0010566)	percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)	4	153031106	158841762	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	123143783	168143783	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	157680158	158841762	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	132642577	167139601	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	131730738	167139601	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
724535	Cm18	Cardiac mass QTL 18	2.6		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	4	118856416	163856416	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
12798525	Anxrr57	Anxiety related response QTL 57	3.21	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	147278504	167139601	Rat

RH142278

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	157,804,459 - 157,804,633 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	157,517,294 - 157,517,467	NCBI	Rnor6.0
Rnor_5.0	4	224,535,132 - 224,535,305	UniSTS	Rnor5.0
RGSC_v3.4	4	161,123,544 - 161,123,717	UniSTS	RGSC3.4
Celera	4	146,541,536 - 146,541,709	UniSTS
RH 3.4 Map	4	1003.1	UniSTS
Cytogenetic Map	4	q42	UniSTS

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31


RefSeq Transcripts	NM_001014059	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237370	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763285	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763286	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592652	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107680	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107681	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085924	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000065846 ⟹ ENSRNOP00000060404

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	157,798,808 - 157,804,838 (+)	Ensembl
Rnor_6.0 Ensembl	4	157,511,642 - 157,517,669 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000078769 ⟹ ENSRNOP00000069609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	157,513,414 - 157,516,746 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099374 ⟹ ENSRNOP00000097907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	157,798,808 - 157,804,842 (+)	Ensembl

RefSeq Acc Id:

NM_001014059 ⟹ NP_001014081

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,485,051 - 159,491,085 (+)	NCBI
mRatBN7.2	4	157,798,808 - 157,804,842 (+)	NCBI
Rnor_6.0	4	157,511,642 - 157,517,676 (+)	NCBI
Rnor_5.0	4	224,529,480 - 224,535,514 (+)	NCBI
RGSC_v3.4	4	161,117,892 - 161,123,926 (+)	RGD
Celera	4	146,535,886 - 146,541,918 (+)	RGD

Sequence:

show sequence

CCACCCGCTTCTGCGACCCCCCAGCCCCACGCAGCTCCGAGCGCCTGCAGTCGTCTCGCCGCCACACCAGGCATGCAGTAAAGGCCAAAAATCTGGGTCACAGCTGAGGAAGACCTCAGATCCAGAGT
ACAGAATGTGGCCTGCTCAACTGCTGTCCCAACTCCTCCCTCTCTGGCCACTGCTGTTGCTACCCCTATCACTGCCTGCTCAGGGCTCCTCCCATCGATCCCCCCCAGCCCCAGCCCGTCCCCCCTGC
GTCCGGGGTGGGCCCTCAGCCCCTCGCCACGTGTGTGTTTGGGAGCGGGCGCCTCCACCAAGCCGATCCCCACGGGTCCCAAGATCACGTCGGCAAGTTCTGCCAGGCACTGCACCCCCTGCTACTCC
ATCAGGCTTTGAGGAGGGGCCTCCCTCCTCTCAGTACCCTTGGGCCATAGTGTGGGGTCCCACAGTATCTCGGGAGGATGGAGGGGACCCCAACTCTGTCAATCCTGGATTTCTGCCCCTGGACTATG
GTTTTGCAGCCCCACATGGGCTGGCTACTCCGCACCCCAACTCAGACTCCATGCGGGATGATGGAGACGGGCTCATCCTTGGGGAAACACCTGCCACCTTGAGGCCCTTCCTGTTTGGAGGGCGCGGA
GAAGGTGTGGACCCTCAGCTTTACGTGACAATTACCATATCCATCATCATTGTTCTTGTGGCGACTGGCATCATCTTCAAGTTCTGCTGGGACCGTAGCCAGAAGCGGCGCAGGCCCTCAGGGCAGCA
AGGTGCCCTGAGGCAGGAAGAGAGCCAGCAACCACTGACAGACCTGTCTCCTGCTGGAGTCACTGTGCTGGGGGCTTTTGGGGACTCACCTACCCCCACCCCTGATCATGAGGAACCCCGAGGGGGAC
CCCGGCCTGGGATGCCCCAGCCTAAGGGGGCTCCAGCCTTCCAGTTGAACCGGTGAGGGCAATGGGATGAGAGGGACTGATGGGATGGGAGGGTGAGGAGGGAAGACAATTTAGGTCTCTAGACCTTC
AGTTATTCTTCCCGGGTGGGTGGTCTTCCCCAATGCAGTCCATGACTCCCCTTCCTGATCTGGTTCCCAGCCTCTGGTCCCCTGCCTCCCGAGGGGGCTAGTCGGATCCTCTCCAAGGGCAATGGGGC
TCCCTGCAGCCCAGGCTTTCTGTCCTATTCTCCTACCACCCTTTAATTCTAGCTGTGTCCTCTTAACCCTGACTCCTCCTTCAGCTTCAGCCTCCTCCTTGGTTCCTGACTATGCATTTTCCCTCTTC
CTCTCAGGATTCCCCTGGTGAATCTGTGATGCCCCCCATGTTGGGGTGCTGCCAAGCAGGAGGCCAAGTGGCCAGCATAGCCACCATCCACTGAGGGTGGGGCAACCATGGGGAATTGGGGCCATGGT
GGGGGGCTCCTAGCTCCTGTCCTTGCACACAACCTGGGACACTCAGTAATCCCATGGGCAAGCCCAAGCGTTTGTCCCCCAGTGACTGGGGTCTCCCATTCCCACCCTTGCACATTCACATGAAAGCC
TTGATCACTCACCCACACCCTCACAGGCCATAGCACAGTCACGCTCTCCATGCTGCTCCTCTGCTGTGTCCCCATTCACGTCTGCTCACCTGGCTCCGCGCTCTCTCCCGTGTTGCCTACGTTCTGCC
CCTTTACATTCTCTGTGCCCATCTCAGACTGGGCATGGGCATTTCTGGCCCCAATATATGACATAGTGTGCCCACTCTGCCTCATCAATACTCACTGGTCTAGCTTCTGTGGCCCTTGCATGCTGCCC
TAGAGGTGGGTGGGAGGTGAGCCAGGGGCTCCTTATACCATGTGTCATGGCCCATTCATGTCTTATGTCTCACCATCCTTCCATCCCATTCCAAGGATGCTGGCATTTCCGAGGGCTCCCCCACAGGA
ATTGGGGTAGTGAGGCCCAATTACTAAACTCTGTCACCTGAAATATGGATTTGGGGGAGTCACCTGCTGCACTACATGAGATGGGGCTCCCATGTTCTCCCTTCCCTCCCAAGTCCCTTGTCTTGTCT
GCCCTGGCTGTCTGTGTGTATGTGTCTGTATGGAATTCGGAGCCCCCTCCATAGGTCCTCCACCTCCCACCCTCCCCTAAGGCCTCCCTAAATGTACCTAGGCTGCCAGGAACTGAAGCCAGCTGGTT
CAAGGCCATTGGGAGCTCTGCCTCCGTATCCACCTTCTCTTCCTGGGTCCCGTCACATCCCCTCATGTCCCCTCCTTCCCTCTCCCTTTTCCTTTCTTCAGGTTCTCCCCTCTTTCTTGTTCATCTCT
CCAGCCCTTCTCCCTCTTACCTGGCTCCTATGCTGTGATATATATTTTTGTATTATCTCTTTCTTCTTGTGGTGATAATCTTGTGGGATGTAAGTTTCAAAATTTTCAAATAAAGCCTTTGCAAGATA
AAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006237370 ⟹ XP_006237432

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,486,921 - 159,491,085 (+)	NCBI
mRatBN7.2	4	157,800,690 - 157,804,842 (+)	NCBI
Rnor_6.0	4	157,513,527 - 157,517,676 (+)	NCBI
Rnor_5.0	4	224,529,480 - 224,535,514 (+)	NCBI

Sequence:

show sequence

AGCTTTCCCCTAAAAGTATGCCAAGAAACGGAGGATTCTAGGAAGCAGAAGCATGACTGGTAAC
TGTGCGGCCTGGTAAAGGCCAAAAATCTGGGTCACAGCTGAGGAAGACCTCAGATCCAGAGTACAGAATGTGGCCTGCTCAACTGCTGTCCCAACTCCTCCCTCTCTGGCCACTGCTGTTGCTACCCC
TATCACTGCCTGCTCAGGGCTCCTCCCATCGATCCCCCCCAGCCCCAGCCCGTCCCCCCTGCGTCCGGGGTGGGCCCTCAGCCCCTCGCCACGTGTGTGTTTGGGAGCGGGCGCCTCCACCAAGCCGA
TCCCCACGGGTCCCAAGATCACGTCGGCAAGTTCTGCCAGGCACTGCACCCCCTGCTACTCCATCAGGCTTTGAGGAGGGGCCTCCCTCCTCTCAGTACCCTTGGGCCATAGTGTGGGGTCCCACAGT
ATCTCGGGAGGATGGAGGGGACCCCAACTCTGTCAATCCTGGATTTCTGCCCCTGGACTATGGTTTTGCAGCCCCACATGGGCTGGCTACTCCGCACCCCAACTCAGACTCCATGCGGGATGATGGAG
ACGGGCTCATCCTTGGGGAAACACCTGCCACCTTGAGGCCCTTCCTGTTTGGAGGGCGCGGAGAAGGTGTGGACCCTCAGCTTTACGTGACAATTACCATATCCATCATCATTGTTCTTGTGGCGACT
GGCATCATCTTCAAGTTCTGCTGGGACCGTAGCCAGAAGCGGCGCAGGCCCTCAGGGCAGCAAGGTGCCCTGAGGCAGGAAGAGAGCCAGCAACCACTGACAGACCTGTCTCCTGCTGGAGTCACTGT
GCTGGGGGCTTTTGGGGACTCACCTACCCCCACCCCTGATCATGAGGAACCCCGAGGGGGACCCCGGCCTGGGATGCCCCAGCCTAAGGGGGCTCCAGCCTTCCAGTTGAACCGGATTCCCCTGGTGA
ATCTGTGATGCCCCCCATGTTGGGGTGCTGCCAAGCAGGAGGCCAAGTGGCCAGCATAGCCACCATCCACTGAGGGTGGGGCAACCATGGGGAATTGGGGCCATGGTGGGGGGCTCCTAGCTCCTGTC
CTTGCACACAACCTGGGACACTCAGTAATCCCATGGGCAAGCCCAAGCGTTTGTCCCCCAGTGACTGGGGTCTCCCATTCCCACCCTTGCACATTCACATGAAAGCCTTGATCACTCACCCACACCCT
CACAGGCCATAGCACAGTCACGCTCTCCATGCTGCTCCTCTGCTGTGTCCCCATTCACGTCTGCTCACCTGGCTCCGCGCTCTCTCCCGTGTTGCCTACGTTCTGCCCCTTTACATTCTCTGTGCCCA
TCTCAGACTGGGCATGGGCATTTCTGGCCCCAATATATGACATAGTGTGCCCACTCTGCCTCATCAATACTCACTGGTCTAGCTTCTGTGGCCCTTGCATGCTGCCCTAGAGGTGGGTGGGAGGTGAG
CCAGGGGCTCCTTATACCATGTGTCATGGCCCATTCATGTCTTATGTCTCACCATCCTTCCATCCCATTCCAAGGATGCTGGCATTTCCGAGGGCTCCCCCACAGGAATTGGGGTAGTGAGGCCCAAT
TACTAAACTCTGTCACCTGAAATATGGATTTGGGGGAGTCACCTGCTGCACTACATGAGATGGGGCTCCCATGTTCTCCCTTCCCTCCCAAGTCCCTTGTCTTGTCTGCCCTGGCTGTCTGTGTGTAT
GTGTCTGTATGGAATTCGGAGCCCCCTCCATAGGTCCTCCACCTCCCACCCTCCCCTAAGGCCTCCCTAAATGTACCTAGGCTGCCAGGAACTGAAGCCAGCTGGTTCAAGGCCATTGGGAGCTCTGC
CTCCGTATCCACCTTCTCTTCCTGGGTCCCGTCACATCCCCTCATGTCCCCTCCTTCCCTCTCCCTTTTCCTTTCTTCAGGTTCTCCCCTCTTTCTTGTTCATCTCTCCAGCCCTTCTCCCTCTTACC
TGGCTCCTATGCTGTGATATATATTTTTGTATTATCTCTTTCTTCTTGTGGTGATAATCTTGTGGGATGTAAGTTTCAAAATTTTCAAATAAAGCCTTTGCAAGATAA

hide sequence

RefSeq Acc Id:

XM_008763285 ⟹ XP_008761507

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,485,667 - 159,491,085 (+)	NCBI
mRatBN7.2	4	157,799,414 - 157,804,842 (+)	NCBI
Rnor_6.0	4	157,512,186 - 157,517,676 (+)	NCBI

Sequence:

show sequence

GCGAAGGGGGTGGGGTGGCGCACCAGCTTGGGGACTGCGGACTTCCTGGAGGGGGTGACAAAGGGGTATCGGGTGTGTGAAGGGACTGGAGTTGACATTGGTGGTGGTGATGGTGGGATGTAGCCGAC
GAAGGGGCAGGTGTGCCCTGAGTAGCGGGCCACTGGTGTCGCTGAGTCCTTATCCGCTCCACTGGTTCGGTTACCATTTCTTTCTTTCCGTCTCTAACCTCCTCCCACCAAGCCCCCCGGCCTCTTTC
CTTCCCCTTCTCTTTCACCTGGCCTCCAGCTCTGTCTCCATATCTCTTTAAATTTCAAGAAACAATTCTTAACTCCTCCATCTTTGCTGTTCTGTTCCCCCCAGTCCCTGTCCCTTCCTTTTTTGATT
TTGCCTTCAACACCATGTTCTAATCTATCTCCATGACTTTCTCCCCATCTCTGATGTCCACCTTCCTTTTCTTTCCACTCTCTTTGCTTGTGTCCTGACCAGACCCCTCCATCCTCGGGCCCGATGTC
TGTTCTCTTTTCCCTCCCTGCCATCTTCTCTCTTCAGCATCCTCCGCCAGTCTCCTGTAGCCCCTCTTCCCTCCCCATCTCTTCTCCTCCCAGCTGCTGTCCATTTCCTCACTCTTGACCAACCTTTT
CCCTCTCGGCCCTTCACCTCTCATACCCCACTCCCCTCCATAGCTTATTCCCTGGGGGTATTCAACGTGCAGACAGACATAGATTAGGGATCCAGAAGACACAGGGTGTCACAAGCTCCTTCTCTCTG
AAGATCCCAGCCCCTCCGGATTCACCACCCTCAGTTTGGAGACTGCACTTCCTTTCAGAACCAACCATCTAGACTCTCCTAGGACTTTCACCCGGAGCAGCCACAGTTGAGGGGGTGGTTTCCCTTGA
GCTCCGCCTTCTTTTAGAATGCACCTATGCACTTGGGTGGTTGAACATCAAGATCAAAACCCAAACCGTGTCCTGTAGCTTTCTTCCCACCTTCTATTTTCTCCCATTTGTCTGAAAAAAGGCAGCTA
GGCAGCTAGCTTCTAGGCTTCATCACAAAAGAAGTTCCTGGCACTACAAGAGGTGACCGGGCTTCGAGCATCTCCCCCAACGCTCACTAAGATTGACTTCCCTTCCCTCCCCCACTCGAAAACTCCCT
CCCTAGCGGTAGGTGCTCAGGGAATCACAAGGTTCTTGGCTCTAAATTAAGATCCAAGGAGCCTGGAGCTGTGGGCAGAGGAAGTGAGAAGGAAGGAAGCCAAAGAGGCAAGAGTAGACAGACACCAG
GGCCAGGAGATAACAGAACCCATCCGGGATGTTGTGGGTGGGGCAGGGGGCTAGTTTAGGGAGCTTTCCCCTAAAAGTATGCCAAGAAACGGAGGATTCTAGGAAGCAGAAGCATGACTGTAAAGGCC
AAAAATCTGGGTCACAGCTGAGGAAGACCTCAGATCCAGAGTACAGAATGTGGCCTGCTCAACTGCTGTCCCAACTCCTCCCTCTCTGGCCACTGCTGTTGCTACCCCTATCACTGCCTGCTCAGGGC
TCCTCCCATCGATCCCCCCCAGCCCCAGCCCGTCCCCCCTGCGTCCGGGGTGGGCCCTCAGCCCCTCGCCACGTGTGTGTTTGGGAGCGGGCGCCTCCACCAAGCCGATCCCCACGGGTCCCAAGATC
ACGTCGGCAAGTTCTGCCAGGCACTGCACCCCCTGCTACTCCATCAGGCTTTGAGGAGGGGCCTCCCTCCTCTCAGTACCCTTGGGCCATAGTGTGGGGTCCCACAGTATCTCGGGAGGATGGAGGGG
ACCCCAACTCTGTCAATCCTGGATTTCTGCCCCTGGACTATGGTTTTGCAGCCCCACATGGGCTGGCTACTCCGCACCCCAACTCAGACTCCATGCGGGATGATGGAGACGGGCTCATCCTTGGGGAA
ACACCTGCCACCTTGAGGCCCTTCCTGTTTGGAGGGCGCGGAGAAGGTGTGGACCCTCAGCTTTACGTGACAATTACCATATCCATCATCATTGTTCTTGTGGCGACTGGCATCATCTTCAAGTTCTG
CTGGGACCGTAGCCAGAAGCGGCGCAGGCCCTCAGGGCAGCAAGGTGCCCTGAGGCAGGAAGAGAGCCAGCAACCACTGACAGACCTGTCTCCTGCTGGAGTCACTGTGCTGGGGGCTTTTGGGGACT
CACCTACCCCCACCCCTGATCATGAGGAACCCCGAGGGGGACCCCGGCCTGGGATGCCCCAGCCTAAGGGGGCTCCAGCCTTCCAGTTGAACCGGATTCCCCTGGTGAATCTGTGATGCCCCCCATGT
TGGGGTGCTGCCAAGCAGGAGGCCAAGTGGCCAGCATAGCCACCATCCACTGAGGGTGGGGCAACCATGGGGAATTGGGGCCATGGTGGGGGGCTCCTAGCTCCTGTCCTTGCACACAACCTGGGACA
CTCAGTAATCCCATGGGCAAGCCCAAGCGTTTGTCCCCCAGTGACTGGGGTCTCCCATTCCCACCCTTGCACATTCACATGAAAGCCTTGATCACTCACCCACACCCTCACAGGCCATAGCACAGTCA
CGCTCTCCATGCTGCTCCTCTGCTGTGTCCCCATTCACGTCTGCTCACCTGGCTCCGCGCTCTCTCCCGTGTTGCCTACGTTCTGCCCCTTTACATTCTCTGTGCCCATCTCAGACTGGGCATGGGCA
TTTCTGGCCCCAATATATGACATAGTGTGCCCACTCTGCCTCATCAATACTCACTGGTCTAGCTTCTGTGGCCCTTGCATGCTGCCCTAGAGGTGGGTGGGAGGTGAGCCAGGGGCTCCTTATACCAT
GTGTCATGGCCCATTCATGTCTTATGTCTCACCATCCTTCCATCCCATTCCAAGGATGCTGGCATTTCCGAGGGCTCCCCCACAGGAATTGGGGTAGTGAGGCCCAATTACTAAACTCTGTCACCTGA
AATATGGATTTGGGGGAGTCACCTGCTGCACTACATGAGATGGGGCTCCCATGTTCTCCCTTCCCTCCCAAGTCCCTTGTCTTGTCTGCCCTGGCTGTCTGTGTGTATGTGTCTGTATGGAATTCGGA
GCCCCCTCCATAGGTCCTCCACCTCCCACCCTCCCCTAAGGCCTCCCTAAATGTACCTAGGCTGCCAGGAACTGAAGCCAGCTGGTTCAAGGCCATTGGGAGCTCTGCCTCCGTATCCACCTTCTCTT
CCTGGGTCCCGTCACATCCCCTCATGTCCCCTCCTTCCCTCTCCCTTTTCCTTTCTTCAGGTTCTCCCCTCTTTCTTGTTCATCTCTCCAGCCCTTCTCCCTCTTACCTGGCTCCTATGCTGTGATAT
ATATTTTTGTATTATCTCTTTCTTCTTGTGGTGATAATCTTGTGGGATGTAAGTTTCAAAATTTTCAAATAAAGCCTTTGCAAGATAA

hide sequence

RefSeq Acc Id:

XM_008763286 ⟹ XP_008761508

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,482,680 - 159,491,085 (+)	NCBI
mRatBN7.2	4	157,796,425 - 157,804,842 (+)	NCBI
Rnor_6.0	4	157,508,862 - 157,517,676 (+)	NCBI

Sequence:

show sequence

AAGCTTCGTGTACAAGGCCCTATTTGCTAAATGAACATTCATTTGATCAATGTGAAGGTTGCAATGAGTCTACTAGAGCTTATCCGACGCTCCCTGGGAGGCTAGGCTGTGTGGGGAGTTGTCCCAGC
TCCCTTGCAATGCCCCGCTGCAGCAGCAGCAGCAACATTGCAGCTGTGCCTTCCTATGATGTGCACCGTCTTTCTCCTGCCACTGGGAGACACTGGGAGGGAGAGCATCTCACTGACTCACTGCTGTT
TTGACTTGGAATGAAAGGCTGTCAGGGACGGGCAAGAAGGGGAGTAGCTGCTGTGGATGCTGTTCTCAACAGCAGGCTTCCTTCCTGGAGGCGGGAGTAATGAGGGTGCTCGGGGCGGGAGGAGATGG
ATGGATGGCCAGGAGGGGCGTGTCTGAGGGGGAGAGCGAAGAGATGAGGGGATGCAGCCAGACGGATGCAATGGAGAGAATGAAGGGAGTGGAGAGCGGGACCTTGTTCACCGAGCACTGAGGAGGGA
GCTTTGACCACGTGACAAAGCTGCCGTCAGGATGTCTGGCGAAGAGAACGAACAAAGTTAGGGACTCAAAAGTATGGGTGACTCAGAATTTCAGAACTGCTTGGGAGGTCAGAAATCATGGGATCTAT
GAAGCTACGCTTAGGTAGAGGGGAAGCTTGCCCCATCACAACCTGAGGAATTGGAGGTTGCGCTCTCCCCCACCCCACCCCCAACCCCTGCTCCTCTTCCCAACCTTGCACCTGGGACAAAAGCTGAG
CTCGCAGAGTGGCAAATGGAGGGTTAAGTCGTGCGTGGCCTACAGACGTGAGAAGGAGAGGCGGAGACCAAATGGTTCTAGTCGCCCGCCGAACCCAGCCGAGCCTAGCCGAGCCCAGCCGAAGCGAG
CATCTCCCGCCGCCGCCGCCACCGCCGCCGCCGCCCCGCGCCCCGGGCGCCCGCCCCCCTCCAGCTCCAGCTCCTCGCTGCCAGCCAAACCTCCCGACCATGCCCGGCGCCCCACCCGCTTCTGCGAC
CCCCCAGCCCCACGCAGCTCCGAGCGCCTGCAGTCGTCTCGCCGCCACACCAGGCATGCAGTAAAGGCCAAAAATCTGGGTCACAGCTGAGGAAGACCTCAGATCCAGAGTACAGAATGTGGCCTGCT
CAACTGCTGTCCCAACTCCTCCCTCTCTGGCCACTGCTGTTGCTACCCCTATCACTGCCTGCTCAGGGCTCCTCCCATCGATCCCCCCCAGCCCCAGCCCGTCCCCCCTGCGTCCGGGGTGGGCCCTC
AGCCCCTCGCCACGTGTGTGTTTGGGAGCGGGCGCCTCCACCAAGCCGATCCCCACGGGTCCCAAGATCACGTCGGCAAGTTCTGCCAGGCACTGCACCCCCTGCTACTCCATCAGGCTTTGAGGAGG
GGCCTCCCTCCTCTCAGTACCCTTGGGCCATAGTGTGGGGTCCCACAGTATCTCGGGAGGATGGAGGGGACCCCAACTCTGTCAATCCTGGATTTCTGCCCCTGGACTATGGTTTTGCAGCCCCACAT
GGGCTGGCTACTCCGCACCCCAACTCAGACTCCATGCGGGATGATGGAGACGGGCTCATCCTTGGGGAAACACCTGCCACCTTGAGGCCCTTCCTGTTTGGAGGGCGCGGAGAAGGTGTGGACCCTCA
GCTTTACGTGACAATTACCATATCCATCATCATTGTTCTTGTGGCGACTGGCATCATCTTCAAGTTCTGCTGGGACCGTAGCCAGAAGCGGCGCAGGCCCTCAGGGCAGCAAGGTGCCCTGAGGCAGG
AAGAGAGCCAGCAACCACTGACAGACCTGTCTCCTGCTGGAGTCACTGTGCTGGGGGCTTTTGGGGACTCACCTACCCCCACCCCTGATCATGAGGAACCCCGAGGGGGACCCCGGCCTGGGATGCCC
CAGCCTAAGGGGGCTCCAGCCTTCCAGTTGAACCGGATTCCCCTGGTGAATCTGTGATGCCCCCCATGTTGGGGTGCTGCCAAGCAGGAGGCCAAGTGGCCAGCATAGCCACCATCCACTGAGGGTGG
GGCAACCATGGGGAATTGGGGCCATGGTGGGGGGCTCCTAGCTCCTGTCCTTGCACACAACCTGGGACACTCAGTAATCCCATGGGCAAGCCCAAGCGTTTGTCCCCCAGTGACTGGGGTCTCCCATT
CCCACCCTTGCACATTCACATGAAAGCCTTGATCACTCACCCACACCCTCACAGGCCATAGCACAGTCACGCTCTCCATGCTGCTCCTCTGCTGTGTCCCCATTCACGTCTGCTCACCTGGCTCCGCG
CTCTCTCCCGTGTTGCCTACGTTCTGCCCCTTTACATTCTCTGTGCCCATCTCAGACTGGGCATGGGCATTTCTGGCCCCAATATATGACATAGTGTGCCCACTCTGCCTCATCAATACTCACTGGTC
TAGCTTCTGTGGCCCTTGCATGCTGCCCTAGAGGTGGGTGGGAGGTGAGCCAGGGGCTCCTTATACCATGTGTCATGGCCCATTCATGTCTTATGTCTCACCATCCTTCCATCCCATTCCAAGGATGC
TGGCATTTCCGAGGGCTCCCCCACAGGAATTGGGGTAGTGAGGCCCAATTACTAAACTCTGTCACCTGAAATATGGATTTGGGGGAGTCACCTGCTGCACTACATGAGATGGGGCTCCCATGTTCTCC
CTTCCCTCCCAAGTCCCTTGTCTTGTCTGCCCTGGCTGTCTGTGTGTATGTGTCTGTATGGAATTCGGAGCCCCCTCCATAGGTCCTCCACCTCCCACCCTCCCCTAAGGCCTCCCTAAATGTACCTA
GGCTGCCAGGAACTGAAGCCAGCTGGTTCAAGGCCATTGGGAGCTCTGCCTCCGTATCCACCTTCTCTTCCTGGGTCCCGTCACATCCCCTCATGTCCCCTCCTTCCCTCTCCCTTTTCCTTTCTTCA
GGTTCTCCCCTCTTTCTTGTTCATCTCTCCAGCCCTTCTCCCTCTTACCTGGCTCCTATGCTGTGATATATATTTTTGTATTATCTCTTTCTTCTTGTGGTGATAATCTTGTGGGATGTAAGTTTCAA
AATTTTCAAATAAAGCCTTTGCAAGATAA

hide sequence

RefSeq Acc Id:

XM_017592652 ⟹ XP_017448141

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,485,185 - 159,491,085 (+)	NCBI
mRatBN7.2	4	157,798,930 - 157,804,842 (+)	NCBI
Rnor_6.0	4	157,511,753 - 157,517,676 (+)	NCBI

Sequence:

show sequence

AGGGAGCTGGCTCTGTCCTCCCCGGTGCCAGCTCCGCGCCCTTCGCCCCCCGCTCTTCCTGGAG
CGGTCTCCAGCCGCCTCCAGTCGCCCAGAGCTCCTTTCCACCGTGCCCTCCATCCCTCCGCTGTCCTGACTCCATCCTATCCTCTTGGTGCAGCAGTCAACGTCTCCGCGTCTGCCTCCATCCCGCCT
TTAGCTCATCCTGCAGCTTCGGGCATCCTCCTGCCTCAGGTTCCCTTTCCGCTCTGGGTGCTCCCTCCAAATTCCATGGCCGATCTTTTTCCCATTTTCCCGGTTCGCGCCGCTTTCCAGCCCTGTCC
AGGGAGCGCAGGCCTGTGGGATTGGCGGGATTGGGGTCTCTGCTAGAGATGGGGCCCGGTTCCCCCACCCCACCCCCAGTTCGTCTTCTGCGCACAACAGTAAAGGCCAAAAATCTGGGTCACAGCTG
AGGAAGACCTCAGATCCAGAGTACAGAATGTGGCCTGCTCAACTGCTGTCCCAACTCCTCCCTCTCTGGCCACTGCTGTTGCTACCCCTATCACTGCCTGCTCAGGGCTCCTCCCATCGATCCCCCCC
AGCCCCAGCCCGTCCCCCCTGCGTCCGGGGTGGGCCCTCAGCCCCTCGCCACGTGTGTGTTTGGGAGCGGGCGCCTCCACCAAGCCGATCCCCACGGGTCCCAAGATCACGTCGGCAAGTTCTGCCAG
GCACTGCACCCCCTGCTACTCCATCAGGCTTTGAGGAGGGGCCTCCCTCCTCTCAGTACCCTTGGGCCATAGTGTGGGGTCCCACAGTATCTCGGGAGGATGGAGGGGACCCCAACTCTGTCAATCCT
GGATTTCTGCCCCTGGACTATGGTTTTGCAGCCCCACATGGGCTGGCTACTCCGCACCCCAACTCAGACTCCATGCGGGATGATGGAGACGGGCTCATCCTTGGGGAAACACCTGCCACCTTGAGGCC
CTTCCTGTTTGGAGGGCGCGGAGAAGGTGTGGACCCTCAGCTTTACGTGACAATTACCATATCCATCATCATTGTTCTTGTGGCGACTGGCATCATCTTCAAGTTCTGCTGGGACCGTAGCCAGAAGC
GGCGCAGGCCCTCAGGGCAGCAAGGTGCCCTGAGGCAGGAAGAGAGCCAGCAACCACTGACAGACCTGTCTCCTGCTGGAGTCACTGTGCTGGGGGCTTTTGGGGACTCACCTACCCCCACCCCTGAT
CATGAGGAACCCCGAGGGGGACCCCGGCCTGGGATGCCCCAGCCTAAGGGGGCTCCAGCCTTCCAGTTGAACCGGATTCCCCTGGTGAATCTGTGATGCCCCCCATGTTGGGGTGCTGCCAAGCAGGA
GGCCAAGTGGCCAGCATAGCCACCATCCACTGAGGGTGGGGCAACCATGGGGAATTGGGGCCATGGTGGGGGGCTCCTAGCTCCTGTCCTTGCACACAACCTGGGACACTCAGTAATCCCATGGGCAA
GCCCAAGCGTTTGTCCCCCAGTGACTGGGGTCTCCCATTCCCACCCTTGCACATTCACATGAAAGCCTTGATCACTCACCCACACCCTCACAGGCCATAGCACAGTCACGCTCTCCATGCTGCTCCTC
TGCTGTGTCCCCATTCACGTCTGCTCACCTGGCTCCGCGCTCTCTCCCGTGTTGCCTACGTTCTGCCCCTTTACATTCTCTGTGCCCATCTCAGACTGGGCATGGGCATTTCTGGCCCCAATATATGA
CATAGTGTGCCCACTCTGCCTCATCAATACTCACTGGTCTAGCTTCTGTGGCCCTTGCATGCTGCCCTAGAGGTGGGTGGGAGGTGAGCCAGGGGCTCCTTATACCATGTGTCATGGCCCATTCATGT
CTTATGTCTCACCATCCTTCCATCCCATTCCAAGGATGCTGGCATTTCCGAGGGCTCCCCCACAGGAATTGGGGTAGTGAGGCCCAATTACTAAACTCTGTCACCTGAAATATGGATTTGGGGGAGTC
ACCTGCTGCACTACATGAGATGGGGCTCCCATGTTCTCCCTTCCCTCCCAAGTCCCTTGTCTTGTCTGCCCTGGCTGTCTGTGTGTATGTGTCTGTATGGAATTCGGAGCCCCCTCCATAGGTCCTCC
ACCTCCCACCCTCCCCTAAGGCCTCCCTAAATGTACCTAGGCTGCCAGGAACTGAAGCCAGCTGGTTCAAGGCCATTGGGAGCTCTGCCTCCGTATCCACCTTCTCTTCCTGGGTCCCGTCACATCCC
CTCATGTCCCCTCCTTCCCTCTCCCTTTTCCTTTCTTCAGGTTCTCCCCTCTTTCTTGTTCATCTCTCCAGCCCTTCTCCCTCTTACCTGGCTCCTATGCTGTGATATATATTTTTGTATTATCTCTT
TCTTCTTGTGGTGATAATCTTGTGGGATGTAAGTTTCAAAATTTTCAAATAAAGCCTTTGCAAGATAA

hide sequence

RefSeq Acc Id:

XM_039107680 ⟹ XP_038963608

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,482,680 - 159,491,085 (+)	NCBI
mRatBN7.2	4	157,797,392 - 157,804,842 (+)	NCBI

RefSeq Acc Id:

XM_039107681 ⟹ XP_038963609

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	159,482,678 - 159,491,085 (+)	NCBI
mRatBN7.2	4	157,796,425 - 157,804,842 (+)	NCBI


Protein RefSeqs	NP_001014081	(Get FASTA)	NCBI Sequence Viewer
	XP_006237432	(Get FASTA)	NCBI Sequence Viewer
	XP_008761507	(Get FASTA)	NCBI Sequence Viewer
	XP_008761508	(Get FASTA)	NCBI Sequence Viewer
	XP_017448141	(Get FASTA)	NCBI Sequence Viewer
	XP_038963608	(Get FASTA)	NCBI Sequence Viewer
	XP_038963609	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85924	(Get FASTA)	NCBI Sequence Viewer
	EDM01899	(Get FASTA)	NCBI Sequence Viewer
	EDM01900	(Get FASTA)	NCBI Sequence Viewer
	EDM01901	(Get FASTA)	NCBI Sequence Viewer
	EDM01902	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000060404
	ENSRNOP00000060404.1
	ENSRNOP00000097907
GenBank Protein	Q5U2P6	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001014081 ⟸ NM_001014059
- Peptide Label:	precursor
- UniProtKB:	Q5U2P6 (UniProtKB/Swiss-Prot), A6ILP0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWPAQLLSQLLPLWPLLLLPLSLPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGF AAPHGLATPHPNSDSMRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPR PGMPQPKGAPAFQLNR hide sequence

RefSeq Acc Id:	XP_006237432 ⟸ XM_006237370
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AV41 (UniProtKB/TrEMBL), A6ILN7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWPAQLLSQLLPLWPLLLLPLSLPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRS PRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGFAAPHGLATPHPNSDSMRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATG IIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNRIPLVNL hide sequence

RefSeq Acc Id:	XP_008761508 ⟸ XM_008763286
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AV41 (UniProtKB/TrEMBL), A6ILN7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWPAQLLSQLLPLWPLLLLPLSLPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGF AAPHGLATPHPNSDSMRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPR PGMPQPKGAPAFQLNRIPLVNL hide sequence

RefSeq Acc Id:

XP_008761507 ⟸ XM_008763285

- Peptide Label:

isoform X1

- Sequence:

show sequence

MLWVGQGASLGSFPLKVCQETEDSRKQKHDCKGQKSGSQLRKTSDPEYRMWPAQLLSQLLPLWP
LLLLPLSLPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRSPRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGFAAPHGLATPHPNSDS
MRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATGIIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLN
RIPLVNL

hide sequence

RefSeq Acc Id:	XP_017448141 ⟸ XM_017592652
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AV41 (UniProtKB/TrEMBL), A6ILN7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MWPAQLLSQLLPLWPLLLLPLSLPAQGSSHRSPPAPARPPCVRGGPSAPRHVCVWERAPPPSRS PRVPRSRRQVLPGTAPPATPSGFEEGPPSSQYPWAIVWGPTVSREDGGDPNSVNPGFLPLDYGFAAPHGLATPHPNSDSMRDDGDGLILGETPATLRPFLFGGRGEGVDPQLYVTITISIIIVLVATG IIFKFCWDRSQKRRRPSGQQGALRQEESQQPLTDLSPAGVTVLGAFGDSPTPTPDHEEPRGGPRPGMPQPKGAPAFQLNRIPLVNL hide sequence

Protein Domains

AJAP1/PANP C-terminal

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2P6-F1-model_v2	AlphaFold	Q5U2P6	1-272	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-43042	BioCyc
Ensembl Genes	ENSRNOG00000017052	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000065846	ENTREZGENE
	ENSRNOT00000065846.3	UniProtKB/Swiss-Prot
	ENSRNOT00000099374	ENTREZGENE
IMAGE_CLONE	IMAGE:7109219	IMAGE-MGC_LOAD
InterPro	AJAP1_PANP_C	UniProtKB/Swiss-Prot
	PIANP	UniProtKB/Swiss-Prot
KEGG Report	rno:312711	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94843	IMAGE-MGC_LOAD
NCBI Gene	312711	ENTREZGENE
PANTHER	PILR ALPHA-ASSOCIATED NEURAL PROTEIN	UniProtKB/Swiss-Prot
	PTHR32023	UniProtKB/Swiss-Prot
Pfam	AJAP1_PANP_C	UniProtKB/Swiss-Prot
PhenoGen	Pianp	PhenoGen
RatGTEx	ENSRNOG00000017052	RatGTEx
UniProt	A0A8I6AV41	ENTREZGENE, UniProtKB/TrEMBL
	A6ILN7	ENTREZGENE, UniProtKB/TrEMBL
	A6ILP0	ENTREZGENE, UniProtKB/TrEMBL
	PIANP_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-10	Pianp	PILR alpha associated neural protein	RGD1304952	similar to RIKEN cDNA C530028O21 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	RGD1304952	similar to RIKEN cDNA C530028O21 gene	RGD1304952_predicted	similar to RIKEN cDNA C530028O21 gene (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-20	RGD1304952_predicted	similar to RIKEN cDNA C530028O21 gene (predicted)	LOC312711_predicted		Symbol and Name status set to approved	1331353	APPROVED
2005-01-12	LOC312711_predicted	similar to RIKEN cDNA C530028O21 gene (predicted)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - MGI

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - MGI