Mical3 (microtubule associated monooxygenase, calponin and LIM domain containing 3) - Rat Genome Database

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Gene: Mical3 (microtubule associated monooxygenase, calponin and LIM domain containing 3) Rattus norvegicus
Analyze
Symbol: Mical3
Name: microtubule associated monooxygenase, calponin and LIM domain containing 3
RGD ID: 1359504
Description: Predicted to enable actin binding activity and molecular adaptor activity. Predicted to be involved in actin filament depolymerization and localization. Predicted to be located in several cellular components, including Flemming body; intercellular bridge; and nucleoplasm. Orthologous to human MICAL3 (microtubule associated monooxygenase, calponin and LIM domain containing 3); INTERACTS WITH 6-propyl-2-thiouracil; bisphenol A; Cuprizon.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: F-actin-monooxygenase MICAL3; flavoprotein oxidoreductase MICAL3; LOC312683; LOC685601; microtubule associated monoxygenase, calponin and LIM domain containing 3; protein MICAL-3; protein-methionine sulfoxide oxidase MICAL3; similar to MICAL CG33208-PB, isoform B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24154,152,776 - 154,353,274 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,153,834 - 154,302,590 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4160,418,411 - 160,567,975 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04156,202,017 - 156,351,581 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04154,825,481 - 154,975,045 (-)NCBIRnor_WKY
Rnor_6.04153,484,876 - 153,631,986 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4153,484,876 - 153,593,773 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,570,995 - 220,769,680 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44157,338,110 - 157,519,926 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14157,718,223 - 157,764,768 (-)NCBI
Celera4142,997,731 - 143,143,890 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. The MICAL proteins and rab1: a possible link to the cytoskeleton? Fischer J, etal., Biochem Biophys Res Commun. 2005 Mar 11;328(2):415-23.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:16230022   PMID:24440334  


Genomics

Comparative Map Data
Mical3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24154,152,776 - 154,353,274 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4154,153,834 - 154,302,590 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4160,418,411 - 160,567,975 (-)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.04156,202,017 - 156,351,581 (-)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.04154,825,481 - 154,975,045 (-)NCBIRnor_WKY
Rnor_6.04153,484,876 - 153,631,986 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4153,484,876 - 153,593,773 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04220,570,995 - 220,769,680 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44157,338,110 - 157,519,926 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14157,718,223 - 157,764,768 (-)NCBI
Celera4142,997,731 - 143,143,890 (-)NCBICelera
Cytogenetic Map4q42NCBI
MICAL3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382217,787,649 - 18,024,561 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl2217,787,649 - 18,024,561 (-)EnsemblGRCh38hg38GRCh38
GRCh372218,270,415 - 18,507,327 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362216,650,415 - 16,694,766 (-)NCBINCBI36Build 36hg18NCBI36
Celera221,890,073 - 2,127,001 (-)NCBICelera
Cytogenetic Map22q11.21NCBI
HuRef222,084,615 - 2,320,580 (-)NCBIHuRef
CHM1_12218,269,994 - 18,507,198 (-)NCBICHM1_1
T2T-CHM13v2.02218,455,325 - 18,695,978 (-)NCBIT2T-CHM13v2.0
Mical3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396120,908,507 - 121,150,716 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6120,908,668 - 121,107,959 (-)EnsemblGRCm39 Ensembl
GRCm386120,931,546 - 121,173,757 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6120,931,707 - 121,130,999 (-)EnsemblGRCm38mm10GRCm38
MGSCv376120,957,258 - 121,031,627 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366120,972,859 - 121,047,209 (-)NCBIMGSCv36mm8
Celera6122,848,315 - 122,922,629 (-)NCBICelera
Cytogenetic Map6F1NCBI
Mical3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554545,820,299 - 5,983,101 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554545,820,291 - 5,983,262 (-)NCBIChiLan1.0ChiLan1.0
MICAL3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.12216,648,755 - 16,767,797 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2216,651,820 - 16,767,723 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0221,218,210 - 1,454,979 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
MICAL3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12745,399,370 - 45,618,306 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2745,403,392 - 45,550,055 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha271,088,297 - 1,284,230 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02745,769,139 - 45,965,171 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2745,773,173 - 45,965,191 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12745,697,212 - 45,893,090 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02745,670,781 - 45,866,655 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.027441,275 - 637,231 (+)NCBIUU_Cfam_GSD_1.0
Mical3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945109,960,195 - 110,176,667 (+)NCBIHiC_Itri_2
SpeTri2.0NW_004936807769,417 - 985,752 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MICAL3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl569,887,892 - 70,059,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1569,887,884 - 70,132,969 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2572,156,759 - 72,254,310 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Mical3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247359,332,682 - 9,545,157 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247359,332,637 - 9,545,164 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mical3
841 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:50
Interacting mature miRNAs:52
Transcripts:ENSRNOT00000038551
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4148423102157580971Rat
1581574Eae20Experimental allergic encephalomyelitis QTL 207.8nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4153031106158841762Rat

Markers in Region
BE108442  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24154,220,036 - 154,220,192 (+)MAPPERmRatBN7.2
Rnor_6.04153,549,606 - 153,549,761NCBIRnor6.0
Rnor_5.04220,638,885 - 220,639,040UniSTSRnor5.0
RGSC_v3.44157,418,345 - 157,418,500UniSTSRGSC3.4
Celera4143,062,236 - 143,062,391UniSTS
RH 3.4 Map4995.6UniSTS
Cytogenetic Map4q42UniSTS
BF393440  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24154,220,920 - 154,221,056 (+)MAPPERmRatBN7.2
Rnor_6.04153,550,490 - 153,550,625NCBIRnor6.0
Rnor_5.04220,639,769 - 220,639,904UniSTSRnor5.0
RGSC_v3.44157,419,229 - 157,419,364UniSTSRGSC3.4
Celera4143,063,120 - 143,063,255UniSTS
RH 3.4 Map4994.2UniSTS
Cytogenetic Map4q42UniSTS
BF412662  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24154,266,535 - 154,266,777 (+)MAPPERmRatBN7.2
Rnor_6.04153,596,233 - 153,596,474NCBIRnor6.0
Rnor_5.04220,685,295 - 220,685,536UniSTSRnor5.0
RGSC_v3.44157,482,108 - 157,482,349UniSTSRGSC3.4
Celera4143,108,417 - 143,108,658UniSTS
RH 3.4 Map4998.6UniSTS
Cytogenetic Map4q42UniSTS
RH138455  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24154,236,687 - 154,236,876 (+)MAPPERmRatBN7.2
Rnor_6.04153,566,386 - 153,566,574NCBIRnor6.0
Rnor_5.04220,655,448 - 220,655,636UniSTSRnor5.0
RGSC_v3.44157,452,260 - 157,452,448UniSTSRGSC3.4
Celera4143,078,576 - 143,078,764UniSTS
RH 3.4 Map4998.8UniSTS
Cytogenetic Map4q42UniSTS
RH140373  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24154,187,043 - 154,187,182 (+)MAPPERmRatBN7.2
Rnor_6.04153,516,135 - 153,516,273NCBIRnor6.0
Rnor_5.04220,605,249 - 220,605,387UniSTSRnor5.0
RGSC_v3.44157,368,992 - 157,369,130UniSTSRGSC3.4
Celera4143,028,991 - 143,029,129UniSTS
RH 3.4 Map4999.6UniSTS
Cytogenetic Map4q42UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 2 40 31 16 19 16 4 7 74 31 40 11 4
Low 1 3 26 25 25 4 4 4 1 4
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001191085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107869 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107875 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107877 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107880 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107881 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107884 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC123213 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC160830 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000149 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000082982   ⟹   ENSRNOP00000072316
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,153,834 - 154,264,075 (-)Ensembl
Rnor_6.0 Ensembl4153,484,876 - 153,593,773 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000096166   ⟹   ENSRNOP00000094529
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,153,834 - 154,264,075 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000104269   ⟹   ENSRNOP00000087542
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,153,834 - 154,264,075 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110199   ⟹   ENSRNOP00000076562
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,153,834 - 154,264,075 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000110930   ⟹   ENSRNOP00000088019
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,257,821 - 154,302,590 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000115735   ⟹   ENSRNOP00000086464
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,153,834 - 154,264,075 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000119761   ⟹   ENSRNOP00000090105
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4154,153,834 - 154,264,075 (-)Ensembl
RefSeq Acc Id: NM_001191085   ⟹   NP_001178014
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,155,783 - 154,302,581 (-)NCBI
Rnor_6.04153,484,876 - 153,631,986 (-)NCBI
Rnor_5.04220,570,995 - 220,769,680 (-)NCBI
Celera4142,997,731 - 143,143,890 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107869   ⟹   XP_038963797
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107870   ⟹   XP_038963798
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,353,274 (-)NCBI
RefSeq Acc Id: XM_039107871   ⟹   XP_038963799
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,281,689 (-)NCBI
RefSeq Acc Id: XM_039107872   ⟹   XP_038963800
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,334,038 (-)NCBI
RefSeq Acc Id: XM_039107873   ⟹   XP_038963801
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107874   ⟹   XP_038963802
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107875   ⟹   XP_038963803
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107876   ⟹   XP_038963804
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107877   ⟹   XP_038963805
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107878   ⟹   XP_038963806
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107879   ⟹   XP_038963807
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107880   ⟹   XP_038963808
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107881   ⟹   XP_038963809
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107882   ⟹   XP_038963810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107884   ⟹   XP_038963812
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107885   ⟹   XP_038963813
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107886   ⟹   XP_038963814
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,152,776 - 154,243,801 (-)NCBI
RefSeq Acc Id: XM_039107887   ⟹   XP_038963815
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,186,882 - 154,333,111 (-)NCBI
RefSeq Acc Id: XM_039107888   ⟹   XP_038963816
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24154,217,786 - 154,333,111 (-)NCBI
Reference Sequences
RefSeq Acc Id: NP_001178014   ⟸   NM_001191085
- UniProtKB: D3ZGN7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000072316   ⟸   ENSRNOT00000082982
RefSeq Acc Id: XP_038963798   ⟸   XM_039107870
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963800   ⟸   XM_039107872
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963813   ⟸   XM_039107885
- Peptide Label: isoform X13
- UniProtKB: D3ZGN7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963812   ⟸   XM_039107884
- Peptide Label: isoform X12
RefSeq Acc Id: XP_038963810   ⟸   XM_039107882
- Peptide Label: isoform X11
RefSeq Acc Id: XP_038963804   ⟸   XM_039107876
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038963801   ⟸   XM_039107873
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038963809   ⟸   XM_039107881
- Peptide Label: isoform X10
RefSeq Acc Id: XP_038963805   ⟸   XM_039107877
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038963807   ⟸   XM_039107879
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038963802   ⟸   XM_039107874
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038963808   ⟸   XM_039107880
- Peptide Label: isoform X9
RefSeq Acc Id: XP_038963803   ⟸   XM_039107875
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038963806   ⟸   XM_039107878
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038963797   ⟸   XM_039107869
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963799   ⟸   XM_039107871
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038963814   ⟸   XM_039107886
- Peptide Label: isoform X14
RefSeq Acc Id: XP_038963815   ⟸   XM_039107887
- Peptide Label: isoform X15
RefSeq Acc Id: XP_038963816   ⟸   XM_039107888
- Peptide Label: isoform X16
RefSeq Acc Id: ENSRNOP00000076562   ⟸   ENSRNOT00000110199
RefSeq Acc Id: ENSRNOP00000087542   ⟸   ENSRNOT00000104269
RefSeq Acc Id: ENSRNOP00000090105   ⟸   ENSRNOT00000119761
RefSeq Acc Id: ENSRNOP00000094529   ⟸   ENSRNOT00000096166
RefSeq Acc Id: ENSRNOP00000086464   ⟸   ENSRNOT00000115735
RefSeq Acc Id: ENSRNOP00000088019   ⟸   ENSRNOT00000110930
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZGN7-F1-model_v2 AlphaFold D3ZGN7 1-1997 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1359504 AgrOrtholog
BioCyc Gene G2FUF-43187 BioCyc
Ensembl Genes ENSRNOG00000053203 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000072316 ENTREZGENE
  ENSRNOP00000072316.1 UniProtKB/TrEMBL
  ENSRNOP00000076562 ENTREZGENE
  ENSRNOP00000076562.1 UniProtKB/TrEMBL
  ENSRNOP00000086464.1 UniProtKB/TrEMBL
  ENSRNOP00000087542 ENTREZGENE
  ENSRNOP00000087542.1 UniProtKB/TrEMBL
  ENSRNOP00000088019.1 UniProtKB/TrEMBL
  ENSRNOP00000090105.1 UniProtKB/TrEMBL
  ENSRNOP00000094529.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082982 ENTREZGENE
  ENSRNOT00000082982.2 UniProtKB/TrEMBL
  ENSRNOT00000096166.1 UniProtKB/TrEMBL
  ENSRNOT00000104269 ENTREZGENE
  ENSRNOT00000104269.1 UniProtKB/TrEMBL
  ENSRNOT00000110199 ENTREZGENE
  ENSRNOT00000110199.1 UniProtKB/TrEMBL
  ENSRNOT00000110930.1 UniProtKB/TrEMBL
  ENSRNOT00000115735.1 UniProtKB/TrEMBL
  ENSRNOT00000119761.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.418.10 UniProtKB/TrEMBL
  3.50.50.60 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7453653 IMAGE-MGC_LOAD
InterPro Calponin-like_dom_sf UniProtKB/TrEMBL
  CH-domain UniProtKB/TrEMBL
  DUF3585 UniProtKB/TrEMBL
  FAD/NAD-bd_sf UniProtKB/TrEMBL
  LIMA-like UniProtKB/TrEMBL
  MICAL3 UniProtKB/TrEMBL
  mOase_FAD-bd UniProtKB/TrEMBL
  Znf_LIM UniProtKB/TrEMBL
MGC_CLONE MGC:187522 IMAGE-MGC_LOAD
NCBI Gene 362427 ENTREZGENE
PANTHER PTHR23167:SF51 UniProtKB/TrEMBL
  PTHR24206 UniProtKB/TrEMBL
  PTHR24206:SF66 UniProtKB/TrEMBL
Pfam DUF3585 UniProtKB/TrEMBL
  FAD_binding_3 UniProtKB/TrEMBL
  LIM UniProtKB/TrEMBL
  PF00307 UniProtKB/TrEMBL
PhenoGen Mical3 PhenoGen
PROSITE BMERB UniProtKB/TrEMBL
  LIM_DOMAIN_1 UniProtKB/TrEMBL
  LIM_DOMAIN_2 UniProtKB/TrEMBL
  PS50021 UniProtKB/TrEMBL
SMART LIM UniProtKB/TrEMBL
  SM00033 UniProtKB/TrEMBL
Superfamily-SCOP Calponin-homology UniProtKB/TrEMBL
  SSF51905 UniProtKB/TrEMBL
UniProt A0A8I5Y064_RAT UniProtKB/TrEMBL
  A0A8I6A4K7_RAT UniProtKB/TrEMBL
  A0A8I6A690_RAT UniProtKB/TrEMBL
  A0A8I6AA21_RAT UniProtKB/TrEMBL
  A0A8I6AHY7_RAT UniProtKB/TrEMBL
  D3ZGN7 ENTREZGENE, UniProtKB/TrEMBL
  Q5XIM1_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Mical3  microtubule associated monooxygenase, calponin and LIM domain containing 3  LOC685601  similar to MICAL CG33208-PB, isoform B  Data Merged 737654 PROVISIONAL
2013-04-04 Mical3  microtubule associated monooxygenase, calponin and LIM domain containing 3  Mical3  microtubule associated monoxygenase, calponin and LIM domain containing 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC685601  similar to MICAL CG33208-PB, isoform B  RGD1306314_predicted  similar to KIAA0819 protein (predicted)  Data Merged 1643240 APPROVED
2006-11-20 LOC685601  similar to MICAL CG33208-PB, isoform B      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-07-29 Mical3  microtubule associated monoxygenase, calponin and LIM domain containing 3      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-01-20 RGD1306314_predicted  similar to KIAA0819 protein (predicted)  LOC312683_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC312683_predicted  similar to KIAA0819 protein (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL