Tapbpl (TAP binding protein-like) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tapbpl (TAP binding protein-like) Rattus norvegicus
Analyze
Symbol: Tapbpl
Name: TAP binding protein-like
RGD ID: 1307893
Description: Predicted to enable MHC class I protein complex binding activity and TAP complex binding activity. Predicted to be involved in negative regulation of antigen processing and presentation of peptide antigen via MHC class I and peptide antigen assembly with MHC class I protein complex. Predicted to be located in endoplasmic reticulum. Predicted to be part of MHC class I peptide loading complex. Orthologous to human TAPBPL (TAP binding protein like); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC297602; tapasin-related protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,707,686 - 159,715,137 (-)NCBIGRCr8
mRatBN7.24158,021,454 - 158,028,905 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx4164,250,681 - 164,258,126 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04160,033,597 - 160,041,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,669,627 - 158,677,062 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,735,748 - 157,743,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,735,748 - 157,743,199 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,752,544 - 224,759,995 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,342,551 - 161,350,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,587,486 - 161,594,659 (-)NCBI
Celera4146,758,550 - 146,765,999 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23401559   PMID:26869717  


Genomics

Comparative Map Data
Tapbpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,707,686 - 159,715,137 (-)NCBIGRCr8
mRatBN7.24158,021,454 - 158,028,905 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx4164,250,681 - 164,258,126 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04160,033,597 - 160,041,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,669,627 - 158,677,062 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,735,748 - 157,743,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,735,748 - 157,743,199 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,752,544 - 224,759,995 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,342,551 - 161,350,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,587,486 - 161,594,659 (-)NCBI
Celera4146,758,550 - 146,765,999 (-)NCBICelera
Cytogenetic Map4q42NCBI
TAPBPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,451,649 - 6,472,006 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,451,690 - 6,466,517 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,560,815 - 6,571,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,431,438 - 6,441,749 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,431,510 - 6,441,721NCBI
Celera128,178,068 - 8,188,377 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,415,366 - 6,425,677 (+)NCBIHuRef
CHM1_1126,560,055 - 6,570,362 (+)NCBICHM1_1
T2T-CHM13v2.0126,462,036 - 6,482,343 (+)NCBIT2T-CHM13v2.0
Tapbpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,200,890 - 125,208,823 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6125,200,896 - 125,208,823 (-)EnsemblGRCm39 Ensembl
GRCm386125,223,927 - 125,231,860 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,223,933 - 125,231,860 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,174,223 - 125,181,878 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366125,189,824 - 125,197,479 (-)NCBIMGSCv36mm8
Celera6126,894,009 - 126,901,659 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map659.32NCBI
Tapbpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,108,052 - 4,115,760 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,108,044 - 4,116,413 (+)NCBIChiLan1.0ChiLan1.0
TAPBPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,013,232 - 12,023,725 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,009,983 - 12,020,499 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,582,266 - 6,592,762 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,499,353 - 6,509,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,499,429 - 6,509,844 (+)Ensemblpanpan1.1panPan2
TAPBPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,526,968 - 38,534,585 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,526,528 - 38,535,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,081,961 - 8,090,370 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,880,017 - 38,888,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,880,015 - 38,888,935 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,752,794 - 38,761,215 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,794,215 - 38,802,639 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,560,857 - 7,569,264 (+)NCBIUU_Cfam_GSD_1.0
Tapbpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,637,913 - 102,645,679 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,304,971 - 1,313,770 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,304,843 - 1,313,191 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAPBPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,188,179 - 64,197,264 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,188,184 - 64,197,033 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,649,711 - 66,658,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAPBPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,500,157 - 6,510,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,499,614 - 6,515,027 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,721,253 - 1,732,270 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tapbpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,205,093 - 3,211,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,203,683 - 3,211,901 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tapbpl
23 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:45
Count of miRNA genes:40
Interacting mature miRNAs:42
Transcripts:ENSRNOT00000038178
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4157680158158841762Rat
1581574Eae20Experimental allergic encephalomyelitis QTL 207.8nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4153031106158841762Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 6 49 33 19 33 6 13 29 11
Low 37 8 8 8 8 11 68 22 12 8
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000038178   ⟹   ENSRNOP00000038874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4157,735,748 - 157,743,199 (-)Ensembl
RefSeq Acc Id: NM_001106622   ⟹   NP_001100092
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84159,707,686 - 159,715,137 (-)NCBI
mRatBN7.24158,021,454 - 158,028,905 (-)NCBI
Rnor_6.04157,735,748 - 157,743,199 (-)NCBI
Rnor_5.04224,752,544 - 224,759,995 (-)NCBI
RGSC_v3.44161,342,551 - 161,350,002 (-)RGD
Celera4146,758,550 - 146,765,999 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001100092 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM01857 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001100092   ⟸   NM_001106622
- Peptide Label: precursor
- UniProtKB: A6ILT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038874   ⟸   ENSRNOT00000038178
Protein Domains
Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A6L1-F1-model_v2 AlphaFold D4A6L1 1-446 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693407
Promoter ID:EPDNEW_R3932
Type:multiple initiation site
Name:Tapbpl_2
Description:TAP binding protein-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3933  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,742,988 - 157,743,048EPDNEW
RGD ID:13693408
Promoter ID:EPDNEW_R3933
Type:initiation region
Name:Tapbpl_1
Description:TAP binding protein-like
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3932  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04157,743,134 - 157,743,194EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1307893 AgrOrtholog
BioCyc Gene G2FUF-43003 BioCyc
Ensembl Genes ENSRNOG00000027552 Ensembl
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
KEGG Report rno:297602 UniProtKB/TrEMBL
NCBI Gene 297602 ENTREZGENE
PANTHER TAPASIN UniProtKB/TrEMBL
  TAPASIN-RELATED PROTEIN UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PhenoGen Tapbpl PhenoGen
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027552 RatGTEx
SMART IGc1 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
UniProt A6ILT2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Tapbpl  TAP binding protein-like   Tapbpl_predicted  TAP binding protein-like (predicted)  'predicted' is removed 2292626 APPROVED
2005-01-12 Tapbpl_predicted  TAP binding protein-like (predicted)      Symbol and Name status set to approved 70820 APPROVED