Tapbpl (TAP binding protein like) - Rat Genome Database

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Gene: Tapbpl (TAP binding protein like) Heterocephalus glaber
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Symbol: Tapbpl
Name: TAP binding protein like
RGD ID: 18936842
Description: ENCODES a protein that exhibits MHC class I protein complex binding (ortholog); INVOLVED IN negative regulation of antigen processing and presentation of peptide antigen via MHC class I (ortholog); peptide antigen assembly with MHC class I protein complex (ortholog); ASSOCIATED WITH congenital myasthenic syndrome (ortholog); Congenital Myasthenic Syndrome 25 (ortholog); genetic disease (ortholog); FOUND IN endoplasmic reticulum (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: tapasin-related protein
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,205,093 - 3,211,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,203,683 - 3,211,901 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Tapbpl
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248603,205,093 - 3,211,584 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248603,203,683 - 3,211,901 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
TAPBPL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38126,451,649 - 6,472,006 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl126,451,690 - 6,466,517 (+)EnsemblGRCh38hg38GRCh38
GRCh37126,560,815 - 6,571,482 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36126,431,438 - 6,441,749 (+)NCBINCBI36Build 36hg18NCBI36
Build 34126,431,510 - 6,441,721NCBI
Celera128,178,068 - 8,188,377 (+)NCBICelera
Cytogenetic Map12p13.31NCBI
HuRef126,415,366 - 6,425,677 (+)NCBIHuRef
CHM1_1126,560,055 - 6,570,362 (+)NCBICHM1_1
T2T-CHM13v2.0126,462,036 - 6,482,343 (+)NCBIT2T-CHM13v2.0
Tapbpl
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396125,200,890 - 125,208,823 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6125,200,896 - 125,208,823 (-)EnsemblGRCm39 Ensembl
GRCm386125,223,927 - 125,231,860 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6125,223,933 - 125,231,860 (-)EnsemblGRCm38mm10GRCm38
MGSCv376125,174,223 - 125,181,878 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366125,189,824 - 125,197,479 (-)NCBIMGSCv36mm8
Celera6126,894,009 - 126,901,659 (-)NCBICelera
Cytogenetic Map6F3NCBI
cM Map659.32NCBI
Tapbpl
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84159,707,686 - 159,715,137 (-)NCBIGRCr8
mRatBN7.24158,021,454 - 158,028,905 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx4164,250,681 - 164,258,126 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04160,033,597 - 160,041,042 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04158,669,627 - 158,677,062 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04157,735,748 - 157,743,199 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4157,735,748 - 157,743,199 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04224,752,544 - 224,759,995 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44161,342,551 - 161,350,002 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14161,587,486 - 161,594,659 (-)NCBI
Celera4146,758,550 - 146,765,999 (-)NCBICelera
Cytogenetic Map4q42NCBI
Tapbpl
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554134,108,052 - 4,115,760 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554134,108,044 - 4,116,413 (+)NCBIChiLan1.0ChiLan1.0
TAPBPL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21012,013,232 - 12,023,725 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11212,009,983 - 12,020,499 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0126,582,266 - 6,592,762 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1126,499,353 - 6,509,844 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl126,499,429 - 6,509,844 (+)Ensemblpanpan1.1panPan2
TAPBPL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12738,526,968 - 38,534,585 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2738,526,528 - 38,535,937 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha278,081,961 - 8,090,370 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02738,880,017 - 38,888,441 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2738,880,015 - 38,888,935 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12738,752,794 - 38,761,215 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02738,794,215 - 38,802,639 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0277,560,857 - 7,569,264 (+)NCBIUU_Cfam_GSD_1.0
Tapbpl
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404945102,637,913 - 102,645,679 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367091,304,971 - 1,313,770 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367091,304,843 - 1,313,191 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAPBPL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl564,188,179 - 64,197,264 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1564,188,184 - 64,197,033 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2566,649,711 - 66,658,562 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TAPBPL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1116,500,157 - 6,510,777 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl116,499,614 - 6,515,027 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660631,721,253 - 1,732,270 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000002468   ⟹   ENSHGLP00000002417
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046248603,205,093 - 3,211,584 (+)Ensembl
RefSeq Acc Id: XM_004869389   ⟹   XP_004869446
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,203,883 - 3,211,901 (+)NCBI
RefSeq Acc Id: XM_021248126   ⟹   XP_021103785
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,203,879 - 3,211,901 (+)NCBI
RefSeq Acc Id: XM_021248127   ⟹   XP_021103786
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248603,203,683 - 3,211,901 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004869446 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103785 (Get FASTA)   NCBI Sequence Viewer  
  XP_021103786 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000002417
RefSeq Acc Id: XP_021103786   ⟸   XM_021248127
- Peptide Label: isoform X3
- UniProtKB: G5CAP3 (UniProtKB/TrEMBL),   A0AAX6S3P5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021103785   ⟸   XM_021248126
- Peptide Label: isoform X2
- UniProtKB: G5CAP3 (UniProtKB/TrEMBL),   A0AAX6S3J9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004869446   ⟸   XM_004869389
- Peptide Label: isoform X1
- UniProtKB: G5CAP3 (UniProtKB/TrEMBL),   A0AAX6QA22 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000002417   ⟸   ENSHGLT00000002468


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000001831 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000002468 ENTREZGENE
Gene3D-CATH Immunoglobulins UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig/MHC_CS UniProtKB/TrEMBL
  Ig_C1-set UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  Immune_Resp_Modulators UniProtKB/TrEMBL
NCBI Gene Tapbpl ENTREZGENE
PANTHER TAPASIN UniProtKB/TrEMBL
  TAPASIN-RELATED PROTEIN UniProtKB/TrEMBL
Pfam C1-set UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PROSITE IG_LIKE UniProtKB/TrEMBL
  IG_MHC UniProtKB/TrEMBL
SMART IGc1 UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
Superfamily-SCOP Immunoglobulin UniProtKB/TrEMBL
UniProt A0AAX6QA22 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S3J9 ENTREZGENE, UniProtKB/TrEMBL
  A0AAX6S3P5 ENTREZGENE, UniProtKB/TrEMBL
  G5CAP3 ENTREZGENE, UniProtKB/TrEMBL