LOC124459649 (killer cell lectin-like receptor subfamily A, member 12-like) - Rat Genome Database

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Gene: LOC124459649 (killer cell lectin-like receptor subfamily A, member 12-like) Rattus norvegicus
Analyze
Symbol: LOC124459649 (Ensembl: Ly49si2)
Name: killer cell lectin-like receptor subfamily A, member 12-like (Ensembl:immunoreceptor Ly49si2)
RGD ID: 151664697
Description: Predicted to be located in plasma membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84165,200,589 - 165,252,165 (-)NCBIGRCr8
mRatBN7.24163,514,585 - 163,532,015 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4163,514,541 - 163,751,214 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4169,749,438 - 169,766,867 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04165,532,391 - 165,549,823 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04164,166,451 - 164,183,878 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Variants

.
Variants in LOC124459649
341 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000078121   ⟹   ENSRNOP00000069007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4163,514,594 - 163,532,121 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000079951   ⟹   ENSRNOP00000075198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4163,689,855 - 163,749,271 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080754   ⟹   ENSRNOP00000069136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4163,514,594 - 163,564,304 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000081854   ⟹   ENSRNOP00000070583
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4163,514,541 - 163,751,027 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085719   ⟹   ENSRNOP00000075581
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4163,586,975 - 163,600,201 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085918   ⟹   ENSRNOP00000073759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4163,619,344 - 163,751,214 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000117919   ⟹   ENSRNOP00000090269
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4163,514,594 - 163,600,201 (-)Ensembl
RefSeq Acc Id: NM_001402019   ⟹   NP_001388948
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,633 - 165,218,064 (-)NCBI
mRatBN7.24163,514,585 - 163,532,015 (-)NCBI
RefSeq Acc Id: XM_063285433   ⟹   XP_063141503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,589 - 165,250,921 (-)NCBI
RefSeq Acc Id: XM_063285434   ⟹   XP_063141504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,589 - 165,251,689 (-)NCBI
RefSeq Acc Id: XM_063285435   ⟹   XP_063141505
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,589 - 165,250,878 (-)NCBI
RefSeq Acc Id: XM_063285436   ⟹   XP_063141506
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,589 - 165,252,165 (-)NCBI
RefSeq Acc Id: XM_063285437   ⟹   XP_063141507
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,589 - 165,250,875 (-)NCBI
RefSeq Acc Id: XM_063285438   ⟹   XP_063141508
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,204,281 - 165,250,891 (-)NCBI
RefSeq Acc Id: XM_063285439   ⟹   XP_063141509
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,589 - 165,218,135 (-)NCBI
RefSeq Acc Id: XR_010065610
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84165,200,941 - 165,250,889 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001388948   ⟸   NM_001402019
RefSeq Acc Id: ENSRNOP00000069007   ⟸   ENSRNOT00000078121
RefSeq Acc Id: ENSRNOP00000069136   ⟸   ENSRNOT00000080754
RefSeq Acc Id: ENSRNOP00000075198   ⟸   ENSRNOT00000079951
RefSeq Acc Id: ENSRNOP00000090269   ⟸   ENSRNOT00000117919
RefSeq Acc Id: ENSRNOP00000073759   ⟸   ENSRNOT00000085918
RefSeq Acc Id: ENSRNOP00000075581   ⟸   ENSRNOT00000085719
RefSeq Acc Id: ENSRNOP00000070583   ⟸   ENSRNOT00000081854
RefSeq Acc Id: XP_063141506   ⟸   XM_063285436
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141504   ⟸   XM_063285434
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141503   ⟸   XM_063285433
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141505   ⟸   XM_063285435
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JUK7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141507   ⟸   XM_063285437
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063141509   ⟸   XM_063285439
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063141508   ⟸   XM_063285438
- Peptide Label: isoform X3
Protein Domains
C-type lectin

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000064635 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000078121 ENTREZGENE
  ENSRNOT00000080754.2 UniProtKB/TrEMBL
  ENSRNOT00000085918.2 UniProtKB/TrEMBL
Gene3D-CATH Mannose-Binding Protein A, subunit A UniProtKB/TrEMBL
InterPro C-type_lectin-like UniProtKB/TrEMBL
  C-type_lectin-like/link_sf UniProtKB/TrEMBL
  CTDL_fold UniProtKB/TrEMBL
  Ly49_N UniProtKB/TrEMBL
  NKR-like_CTLD UniProtKB/TrEMBL
NCBI Gene LOC124459649 ENTREZGENE
PANTHER KILLER CELL LECTIN-LIKE RECEPTOR 2 UniProtKB/TrEMBL
  KILLER CELL LECTIN-LIKE RECEPTOR, SUBFAMILY A, MEMBER 17 UniProtKB/TrEMBL
Pfam Lectin_C UniProtKB/TrEMBL
  Ly49 UniProtKB/TrEMBL
PhenoGen LOC124459649 PhenoGen
PROSITE C_TYPE_LECTIN_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000064635 RatGTEx
SMART CLECT UniProtKB/TrEMBL
Superfamily-SCOP C-type lectin-like UniProtKB/TrEMBL
UniProt A0A0G2JUK7 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2K6C6_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-08 LOC124459649  killer cell lectin-like receptor subfamily A, member 12-like      Symbol and Name status set to provisional 70820 PROVISIONAL