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Gene: Arhgdib (Rho GDP dissociation inhibitor beta) Rattus norvegicus

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Symbol:

Arhgdib

Name:

Rho GDP dissociation inhibitor beta

RGD ID:

1305383

Description:

Predicted to enable GTPase activity; Rho GDP-dissociation inhibitor activity; and small GTPase binding activity. Involved in cellular response to redox state. Predicted to be located in cytosol. Orthologous to human ARHGDIB (Rho GDP dissociation inhibitor beta); PARTICIPATES IN neurotrophic factor signaling pathway; vasopressin signaling pathway via receptor type 2; INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC362456; MGC108926; rho GDP-dissociation inhibitor 2; Rho, GDP dissociation inhibitor (GDI) beta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARHGDIB (Rho GDP dissociation inhibitor beta)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Arhgdib (Rho, GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arhgdib (Rho GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARHGDIB (Rho GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARHGDIB (Rho GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arhgdib (Rho GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	ARHGDIB (Rho GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARHGDIB (Rho GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arhgdib (Rho GDP dissociation inhibitor beta)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	ARHGDIG (Rho GDP dissociation inhibitor gamma)	HGNC	OrthoDB
Homo sapiens (human):	ARHGDIA (Rho GDP dissociation inhibitor alpha)	HGNC	OrthoDB
Alliance orthologs ³
Homo sapiens (human):	ARHGDIB (Rho GDP dissociation inhibitor beta)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Arhgdib (Rho, GDP dissociation inhibitor beta)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	arhgdig (Rho GDP dissociation inhibitor (GDI) gamma)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	RDI1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	RhoGDI	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	rhi-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	arhgdib	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	arhgdia	Alliance	DIOPT (Hieranoid\|OrthoInspector\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	171,554,139 - 171,573,057 (-)	NCBI		GRCr8
mRatBN7.2	4	169,822,951 - 169,841,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	169,822,952 - 169,841,658 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	176,118,119 - 176,137,767 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	171,899,407 - 171,918,061 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	170,523,784 - 170,543,430 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	170,913,920 - 170,932,789 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,913,923 - 170,932,618 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	173,967,842 - 173,986,494 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	174,212,966 - 174,231,618 (-)	NCBI
Celera	4	158,405,444 - 158,424,190 (-)	NCBI		Celera
Cytogenetic Map	4	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Coronary Syndrome (ISO)

autosomal dominant intellectual developmental disorder 6 (ISO)

Experimental Liver Cirrhosis (ISO)

human immunodeficiency virus infectious disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-trinitrobenzenesulfonic acid (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-diaminodiphenylmethane (EXP)

4,4'-sulfonyldiphenol (ISO)

5-fluorouracil (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

acetamide (EXP)

acrolein (ISO)

actinomycin D (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

alpha-Zearalanol (EXP)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

Azoxymethane (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (ISO)

bisphenol F (ISO)

buspirone (EXP)

buta-1,3-diene (ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chloroprene (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (EXP,ISO)

copper(0) (EXP,ISO)

CU-O LINKAGE (ISO)

curcumin (ISO)

cyclophosphamide (ISO)

cytarabine (ISO)

D-glucose (ISO)

dextran sulfate (ISO)

diallyl disulfide (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (EXP)

diethylstilbestrol (ISO)

dimethylarsinic acid (ISO)

diuron (EXP,ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

entinostat (ISO)

etoposide (ISO)

fenthion (ISO)

flutamide (EXP)

formaldehyde (ISO)

fucoxanthin (ISO)

genistein (EXP)

gentamycin (EXP)

glucose (ISO)

hydrazine (ISO)

hydrogen peroxide (EXP)

isoprenaline (EXP)

isotretinoin (ISO)

L-ascorbic acid (ISO)

lead nitrate (ISO)

leflunomide (ISO)

lipopolysaccharide (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

methidathion (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

methylarsonic acid (ISO)

methylmercury chloride (ISO)

myricetin (ISO)

N-acetyl-beta-D-glucosamine (ISO)

N-acetyl-D-glucosamine (ISO)

N-methyl-4-phenylpyridinium (ISO)

N-nitrosodimethylamine (EXP)

nickel atom (ISO)

niclosamide (ISO)

nimesulide (EXP)

oxycodone (EXP)

ozone (ISO)

paracetamol (EXP,ISO)

perfluorododecanoic acid (EXP)

phenethyl isothiocyanate (ISO)

phenobarbital (ISO)

phenylmercury acetate (ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

propanal (ISO)

prostaglandin D2 (ISO)

prostaglandin J2 (ISO)

quercetin (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

sodium fluoride (ISO)

sulforaphane (ISO)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (ISO)

thioacetamide (EXP)

titanium dioxide (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vancomycin (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to redox state (IEP)

negative regulation of trophoblast cell migration (ISO)

regulation of Rho protein signal transduction (ISO)

Rho protein signal transduction (IEA)

Cellular Component

cytosol (ISO)

Molecular Function

GTPase activator activity (IEA)

GTPase activity (ISO)

protein binding (ISO)

Rho GDP-dissociation inhibitor activity (ISO)

small GTPase binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

neurotrophic factor signaling pathway (IEA)

vasopressin signaling pathway via receptor type 2 (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Modulation of GDP-dissociation inhibitor protein membrane retention by the cellular redox state in adipocytes.	Chinni SR, etal., Exp Cell Res. 1998 Jul 10;242(1):373-80.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	GOA pipeline	RGD automated data pipeline
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7512369	PMID:8262133	PMID:8356058	PMID:10802295	PMID:12477932	PMID:19056867	PMID:19272173	PMID:20458337	PMID:23376485	PMID:24554735

Genomics

Comparative Map Data

Arhgdib
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	171,554,139 - 171,573,057 (-)	NCBI		GRCr8
mRatBN7.2	4	169,822,951 - 169,841,884 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	169,822,952 - 169,841,658 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	176,118,119 - 176,137,767 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	171,899,407 - 171,918,061 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	170,523,784 - 170,543,430 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	170,913,920 - 170,932,789 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	170,913,923 - 170,932,618 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	173,967,842 - 173,986,494 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	174,212,966 - 174,231,618 (-)	NCBI
Celera	4	158,405,444 - 158,424,190 (-)	NCBI		Celera
Cytogenetic Map	4	q43	NCBI

ARHGDIB
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	14,942,015 - 14,961,601 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	14,942,031 - 14,961,728 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	15,094,949 - 15,114,535 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	14,986,217 - 15,005,829 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	14,986,216 - 15,005,829	NCBI
Celera	12	20,239,953 - 20,259,563 (-)	NCBI		Celera
Cytogenetic Map	12	p12.3	NCBI
HuRef	12	14,864,323 - 14,883,946 (-)	NCBI		HuRef
CHM1_1	12	15,061,055 - 15,080,666 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	14,819,352 - 14,838,935 (-)	NCBI		T2T-CHM13v2.0

Arhgdib
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	136,900,653 - 136,918,895 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	136,900,653 - 136,918,897 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	136,923,655 - 136,941,899 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	136,923,655 - 136,941,899 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	136,872,230 - 136,890,238 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	136,887,905 - 136,905,913 (-)	NCBI		MGSCv36	mm8
Celera	6	139,963,719 - 139,982,279 (-)	NCBI		Celera
Cytogenetic Map	6	G1	NCBI
cM Map	6	66.72	NCBI

Arhgdib
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955413	11,670,687 - 11,688,611 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955413	11,670,889 - 11,688,357 (-)	NCBI	ChiLan1.0	ChiLan1.0

ARHGDIB
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	20,390,448 - 20,410,055 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	20,387,209 - 20,406,816 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	14,944,746 - 14,964,357 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	15,341,489 - 15,361,160 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	15,341,491 - 15,361,160 (-)	Ensembl	panpan1.1		panPan2

ARHGDIB
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	31,662,817 - 31,681,951 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	31,662,925 - 31,681,642 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	14,767,149 - 14,786,289 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	31,969,288 - 31,988,436 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	31,969,390 - 31,988,430 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	31,858,692 - 31,877,811 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	31,817,127 - 31,836,266 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	14,499,357 - 14,518,538 (-)	NCBI		UU_Cfam_GSD_1.0

Arhgdib
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	92,743,584 - 92,822,130 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936587	2,470,867 - 2,549,861 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936587	2,471,344 - 2,549,765 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARHGDIB
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	57,576,776 - 57,598,869 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	57,576,754 - 57,598,395 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	60,965,708 - 60,987,353 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARHGDIB
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	14,839,349 - 14,859,237 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	14,839,242 - 14,859,493 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666069	20,450,828 - 20,470,769 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arhgdib
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624752	23,073,680 - 23,091,313 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624752	23,074,249 - 23,090,866 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Arhgdib
120 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	166
Count of miRNA genes:	115
Interacting mature miRNAs:	133
Transcripts:	ENSRNOT00000007779
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6478754	Anxrr43	Anxiety related response QTL 43		0.14035	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	144639524	182687754	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
2303623	Vencon2	Ventilatory control QTL 2	3.8		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	4	135204660	180204660	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	132422778	177422778	Rat
6478693	Anxrr32	Anxiety related response QTL 32		0.00092	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	144639524	182687754	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	135699135	180699135	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	138503169	179293946	Rat
6478700	Anxrr33	Anxiety related response QTL 33		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
634342	Cia24	Collagen induced arthritis QTL 24	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	146565735	175236377	Rat
10053718	Scort25	Serum corticosterone level QTL 25	2.15	0.0097	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	155561574	182687754	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	138503169	173369699	Rat
1549827	Scl46	Serum cholesterol level QTL 46	3.5		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	132396220	177396220	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	125590636	170590636	Rat
2293659	Bmd35	Bone mineral density QTL 35	4.5	0.0001	femur strength trait (VT:0010010)	femoral neck ultimate force (CMO:0001703)	4	137755016	181392681	Rat
10401796	Kidm48	Kidney mass QTL 48			kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	145568712	182687754	Rat
6478718	Anxrr34	Anxiety related response QTL 34		0.00896	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
6478748	Anxrr42	Anxiety related response QTL 42		0.28008	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	144639524	182687754	Rat
1300109	Rf13	Renal function QTL 13	3.91		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	4	157710145	182687754	Rat

Markers in Region

D4Wox38

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	169,823,287 - 169,823,344 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	170,914,257 - 170,914,313	NCBI	Rnor6.0
Rnor_5.0	4	235,171,076 - 235,171,132	UniSTS	Rnor5.0
RGSC_v3.4	4	173,968,173 - 173,968,229	UniSTS	RGSC3.4
Celera	4	158,405,775 - 158,405,831	UniSTS
Cytogenetic Map	4	q43	UniSTS

RH130748

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	4	171,554,195 - 171,554,382 (+)	Marker Load Pipeline
mRatBN7.2	4	169,823,007 - 169,823,194 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	170,913,977 - 170,914,163	NCBI	Rnor6.0
Rnor_5.0	4	235,170,796 - 235,170,982	UniSTS	Rnor5.0
RGSC_v3.4	4	173,967,893 - 173,968,079	UniSTS	RGSC3.4
Celera	4	158,405,495 - 158,405,681	UniSTS
RH 3.4 Map	4	1023.3	UniSTS
Cytogenetic Map	4	q43	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001009600	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237564	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006237565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063286373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC088209	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473964	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ215399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ225418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ233135	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234136	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000007779 ⟹ ENSRNOP00000007779

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	169,822,954 - 169,841,658 (-)	Ensembl
Rnor_6.0 Ensembl	4	170,913,923 - 170,932,618 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109610 ⟹ ENSRNOP00000083858

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	169,822,952 - 169,841,564 (-)	Ensembl

RefSeq Acc Id:

NM_001009600 ⟹ NP_001009600

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,554,145 - 171,572,800 (-)	NCBI
mRatBN7.2	4	169,822,957 - 169,841,622 (-)	NCBI
Rnor_6.0	4	170,913,926 - 170,932,578 (-)	NCBI
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI
RGSC_v3.4	4	173,967,842 - 173,986,494 (-)	RGD
Celera	4	158,405,444 - 158,424,190 (-)	RGD

Sequence:

show sequence

TTGAGAGACAGGCAGAGGTAACCTACAGAGACACACAGGGCGGACAGGAGCCTGGAATTAAGGA
ACAATCAAGATGACGGAGAAGGATGAGCAGCCACAGCTGGAGGAGGGAGAGGATGAGCTGGACA
GCAAGCTCAACTACAAGCCGCCCCCTCAGAAGTCCCTGAAGGAGCTGCAGGAGATGGACAAAGA
TGACGAGAGTCTAACCAAGTACAAGAAAACACTGCTGGGAGATGTCCCCGTGGTAGCAGACCCA
ACAGTTCCCAACGTGACTGTGACCCGGCTTAGCCTTGTTTGTGACAGTGCACCAGGACCAATCA
CCATGGACCTTACTGGTGATCTCAAGGCGCTCAAAAAGGATACATTTGTGCTAAAGGAAGGTAT
CGAATACAGGGTCAAGATTAACTTCAAAGTGAATAAGGATATTGTGTCTGGCCTGAAGTATGTT
CAGCAGACGTACCGGAATGGGATGAAAGTGGATAAAGCTACGTTCATGGTTGGCAGCTACGGGC
CTCGACCAGAGGAGTACGAGTTCCTCACTCCAGTAGAGGAGGCTCCCAAGGGCATGTTGGCCCG
AGGCACTTACCACAACAAGTCCTTCTTCACCGATGATGACAAGCAGGACCACCTCACCTGGGAA
TGGAACCTGGCCATTAAGAAGGATTGGACAGACTGAGTGCATCTGTCCATCCCTCCCGCCCGGA
CCATGTTGATCATTGCGTTCTCCCTCCTCCCTCCCTGTTCCCTGCTGGGTCCTTTATCACACAC
ACACACACACACACACCCCTCATCACTGATATGTTTTATCTTACCCCATCTCTCAGAGTGTTCC
CTTAAAACCCAGGCTTTAACCCGGCATGTTCCCTCAGACTGTCTCCCCAGAGCAGAGCAAGGCC
AGAGTTCTGAAGTTCTCCATCTCATTTAGTGGCCTCCTCTCTTCTCCCAGTTTGAGTCCTGGAG
GCCAGGAAACGGGCAAGCTGTTGCTCATGGCTCCGTGGCCTTCTGTTCAGAAACTTATTCTTCC
ACTGGTTCAATGAATCTCATCACCCTCTCTGCCAATGGGAGCTCTTCTCTTGTGGGAGACACTG
TAAACAACACCAAAGGAAAAAATAAAACCACTGTGTGTGTGAAAAAAAAAAAAAAAAAAAAAAA
AAAAA

hide sequence

RefSeq Acc Id:

XM_006237561 ⟹ XP_006237623

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,554,139 - 171,573,057 (-)	NCBI
mRatBN7.2	4	169,822,951 - 169,841,884 (-)	NCBI
Rnor_6.0	4	170,913,920 - 170,932,789 (-)	NCBI
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI

Sequence:

show sequence

TCATTAATTGTCAAGAATGCTGCTCAGACGGCTGATCAGAAGATAGACAGTGCAGGATTCGAGA
CAGCCCAGGGTTTCCTCCTCAATAAGGAACAATCAAGATGACGGAGAAGGATGAGCAGCCACAG
CTGGAGGAGGGAGAGGATGAGCTGGACAGCAAGCTCAACTACAAGCCGCCCCCTCAGAAGTCCC
TGAAGGAGCTGCAGGAGATGGACAAAGATGACGAGAGTCTAACCAAGTACAAGAAAACACTGCT
GGGAGATGTCCCCGTGGTAGCAGACCCAACAGTTCCCAACGTGACTGTGACCCGGCTTAGCCTT
GTTTGTGACAGTGCACCAGGACCAATCACCATGGACCTTACTGGTGATCTCAAGGCGCTCAAAA
AGGATACATTTGTGCTAAAGGAAGGTATCGAATACAGGGTCAAGATTAACTTCAAAGTGAATAA
GGATATTGTGTCTGGCCTGAAGTATGTTCAGCAGACGTACCGGAATGGGATGAAAGTGGATAAA
GCTACGTTCATGGTTGGCAGCTACGGGCCTCGACCAGAGGAGTACGAGTTCCTCACTCCAGTAG
AGGAGGCTCCCAAGGGCATGTTGGCCCGAGGCACTTACCACAACAAGTCCTTCTTCACCGATGA
TGACAAGCAGGACCACCTCACCTGGGAATGGAACCTGGCCATTAAGAAGGATTGGACAGACTGA
GTGCATCTGTCCATCCCTCCCGCCCGGACCATGTTGATCATTGCGTTCTCCCTCCTCCCTCCCT
GTTCCCTGCTGGGTCCTTTATCACACACACACACACACACACACCCCTCATCACTGATATGTTT
TATCTTACCCCATCTCTCAGAGTGTTCCCTTAAAACCCAGGCTTTAACCCGGCATGTTCCCTCA
GACTGTCTCCCCAGAGCAGAGCAAGGCCAGAGTTCTGAAGTTCTCCATCTCATTTAGTGGCCTC
CTCTCTTCTCCCAGTTTGAGTCCTGGAGGCCAGGAAACGGGCAAGCTGTTGCTCATGGCTCCGT
GGCCTTCTGTTCAGAAACTTATTCTTCCACTGGTTCAATGAATCTCATCACCCTCTCTGCCAAT
GGGAGCTCTTCTCTTGTGGGAGACACTGTAAACAACACCAAAGGAAAAAATAAAACCACTGTGT
GTGTGACTGAGA

hide sequence

RefSeq Acc Id:

XM_006237562 ⟹ XP_006237624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,554,139 - 171,572,620 (-)	NCBI
mRatBN7.2	4	169,822,951 - 169,841,441 (-)	NCBI
Rnor_6.0	4	170,913,920 - 170,932,478 (-)	NCBI
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI

Sequence:

show sequence

CAGAATCAGGCAGGAAATCTCAGAACCACCCTGGGCCCTTGCAGGGGGAGCTGTTGCTGTTTTT
AAGAAGGGCGGTTCTTTAAGACACTTCATGATAAGAAAAGTGCTAACAAGATTGCTGGGGCAGA
AAGGGGAAGTCAGCCCTGGGAAGGGTGACAAGCTGAAGGAGGTAGGAGAGAGTATCCTGCTACC
AGAATGTTCTAGAGAAGTAAGGAACAATCAAGATGACGGAGAAGGATGAGCAGCCACAGCTGGA
GGAGGGAGAGGATGAGCTGGACAGCAAGCTCAACTACAAGCCGCCCCCTCAGAAGTCCCTGAAG
GAGCTGCAGGAGATGGACAAAGATGACGAGAGTCTAACCAAGTACAAGAAAACACTGCTGGGAG
ATGTCCCCGTGGTAGCAGACCCAACAGTTCCCAACGTGACTGTGACCCGGCTTAGCCTTGTTTG
TGACAGTGCACCAGGACCAATCACCATGGACCTTACTGGTGATCTCAAGGCGCTCAAAAAGGAT
ACATTTGTGCTAAAGGAAGGTATCGAATACAGGGTCAAGATTAACTTCAAAGTGAATAAGGATA
TTGTGTCTGGCCTGAAGTATGTTCAGCAGACGTACCGGAATGGGATGAAAGTGGATAAAGCTAC
GTTCATGGTTGGCAGCTACGGGCCTCGACCAGAGGAGTACGAGTTCCTCACTCCAGTAGAGGAG
GCTCCCAAGGGCATGTTGGCCCGAGGCACTTACCACAACAAGTCCTTCTTCACCGATGATGACA
AGCAGGACCACCTCACCTGGGAATGGAACCTGGCCATTAAGAAGGATTGGACAGACTGAGTGCA
TCTGTCCATCCCTCCCGCCCGGACCATGTTGATCATTGCGTTCTCCCTCCTCCCTCCCTGTTCC
CTGCTGGGTCCTTTATCACACACACACACACACACACACCCCTCATCACTGATATGTTTTATCT
TACCCCATCTCTCAGAGTGTTCCCTTAAAACCCAGGCTTTAACCCGGCATGTTCCCTCAGACTG
TCTCCCCAGAGCAGAGCAAGGCCAGAGTTCTGAAGTTCTCCATCTCATTTAGTGGCCTCCTCTC
TTCTCCCAGTTTGAGTCCTGGAGGCCAGGAAACGGGCAAGCTGTTGCTCATGGCTCCGTGGCCT
TCTGTTCAGAAACTTATTCTTCCACTGGTTCAATGAATCTCATCACCCTCTCTGCCAATGGGAG
CTCTTCTCTTGTGGGAGACACTGTAAACAACACCAAAGGAAAAAATAAAACCACTGTGTGTGTG
ACTGAGA

hide sequence

RefSeq Acc Id:

XM_006237563 ⟹ XP_006237625

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,554,139 - 171,572,983 (-)	NCBI
mRatBN7.2	4	169,822,951 - 169,841,780 (-)	NCBI
Rnor_6.0	4	170,913,920 - 170,932,771 (-)	NCBI
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI

Sequence:

show sequence

GCTGCTCAGACGGCTGATCAGAAGATAGACAGTGCAGGATTCGAGACAGCCCAGGGTTTCCTCC
TCAATACTCAGAAGTCAGAGTTGAGAGACAGGCAGAGGTAACCTACAGAGACACACAGGGCGGA
CAGGAGCCTGGAATTAAGGAACAATCAAGATGACGGAGAAGGATGAGCAGCCACAGCTGGAGGA
GGGAGAGGATGAGCTGGACAGCAAGCTCAACTACAAGCCGCCCCCTCAGAAGTCCCTGAAGGAG
CTGCAGGAGATGGACAAAGATGACGAGAGTCTAACCAAGTACAAGAAAACACTGCTGGGAGATG
TCCCCGTGGTAGCAGACCCAACAGTTCCCAACGTGACTGTGACCCGGCTTAGCCTTGTTTGTGA
CAGTGCACCAGGACCAATCACCATGGACCTTACTGGTGATCTCAAGGCGCTCAAAAAGGATACA
TTTGTGCTAAAGGAAGGTATCGAATACAGGGTCAAGATTAACTTCAAAGTGAATAAGGATATTG
TGTCTGGCCTGAAGTATGTTCAGCAGACGTACCGGAATGGGATGAAAGTGGATAAAGCTACGTT
CATGGTTGGCAGCTACGGGCCTCGACCAGAGGAGTACGAGTTCCTCACTCCAGTAGAGGAGGCT
CCCAAGGGCATGTTGGCCCGAGGCACTTACCACAACAAGTCCTTCTTCACCGATGATGACAAGC
AGGACCACCTCACCTGGGAATGGAACCTGGCCATTAAGAAGGATTGGACAGACTGAGTGCATCT
GTCCATCCCTCCCGCCCGGACCATGTTGATCATTGCGTTCTCCCTCCTCCCTCCCTGTTCCCTG
CTGGGTCCTTTATCACACACACACACACACACACACCCCTCATCACTGATATGTTTTATCTTAC
CCCATCTCTCAGAGTGTTCCCTTAAAACCCAGGCTTTAACCCGGCATGTTCCCTCAGACTGTCT
CCCCAGAGCAGAGCAAGGCCAGAGTTCTGAAGTTCTCCATCTCATTTAGTGGCCTCCTCTCTTC
TCCCAGTTTGAGTCCTGGAGGCCAGGAAACGGGCAAGCTGTTGCTCATGGCTCCGTGGCCTTCT
GTTCAGAAACTTATTCTTCCACTGGTTCAATGAATCTCATCACCCTCTCTGCCAATGGGAGCTC
TTCTCTTGTGGGAGACACTGTAAACAACACCAAAGGAAAAAATAAAACCACTGTGTGTGTGACT
GAGA

hide sequence

RefSeq Acc Id:

XM_006237564 ⟹ XP_006237626

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,554,139 - 171,572,652 (-)	NCBI
mRatBN7.2	4	169,822,951 - 169,841,466 (-)	NCBI
Rnor_6.0	4	170,913,920 - 170,932,478 (-)	NCBI
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI

Sequence:

show sequence

CAGAATCAGGCAGGAAATCTCAGAACCACCCTGGGCCCTTGCAGGGGGAGCTGTTGCTGTTTTT
AAGAAGGGCGGTTCTTTAAGACACTTCATGATAAGAAAAGTGCTAACAAGATTGCTGGGGCAGA
AAGGGGAAGTCAGCCCTGGGAAGGGTGACAAGCTGAAGGAGTAAGGAACAATCAAGATGACGGA
GAAGGATGAGCAGCCACAGCTGGAGGAGGGAGAGGATGAGCTGGACAGCAAGCTCAACTACAAG
CCGCCCCCTCAGAAGTCCCTGAAGGAGCTGCAGGAGATGGACAAAGATGACGAGAGTCTAACCA
AGTACAAGAAAACACTGCTGGGAGATGTCCCCGTGGTAGCAGACCCAACAGTTCCCAACGTGAC
TGTGACCCGGCTTAGCCTTGTTTGTGACAGTGCACCAGGACCAATCACCATGGACCTTACTGGT
GATCTCAAGGCGCTCAAAAAGGATACATTTGTGCTAAAGGAAGGTATCGAATACAGGGTCAAGA
TTAACTTCAAAGTGAATAAGGATATTGTGTCTGGCCTGAAGTATGTTCAGCAGACGTACCGGAA
TGGGATGAAAGTGGATAAAGCTACGTTCATGGTTGGCAGCTACGGGCCTCGACCAGAGGAGTAC
GAGTTCCTCACTCCAGTAGAGGAGGCTCCCAAGGGCATGTTGGCCCGAGGCACTTACCACAACA
AGTCCTTCTTCACCGATGATGACAAGCAGGACCACCTCACCTGGGAATGGAACCTGGCCATTAA
GAAGGATTGGACAGACTGAGTGCATCTGTCCATCCCTCCCGCCCGGACCATGTTGATCATTGCG
TTCTCCCTCCTCCCTCCCTGTTCCCTGCTGGGTCCTTTATCACACACACACACACACACACACC
CCTCATCACTGATATGTTTTATCTTACCCCATCTCTCAGAGTGTTCCCTTAAAACCCAGGCTTT
AACCCGGCATGTTCCCTCAGACTGTCTCCCCAGAGCAGAGCAAGGCCAGAGTTCTGAAGTTCTC
CATCTCATTTAGTGGCCTCCTCTCTTCTCCCAGTTTGAGTCCTGGAGGCCAGGAAACGGGCAAG
CTGTTGCTCATGGCTCCGTGGCCTTCTGTTCAGAAACTTATTCTTCCACTGGTTCAATGAATCT
CATCACCCTCTCTGCCAATGGGAGCTCTTCTCTTGTGGGAGACACTGTAAACAACACCAAAGGA
AAAAATAAAACCACTGTGTGTGTGACTGAGA

hide sequence

RefSeq Acc Id:

XM_006237565 ⟹ XP_006237627

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,554,139 - 171,572,273 (-)	NCBI
mRatBN7.2	4	169,822,951 - 169,841,008 (-)	NCBI
Rnor_6.0	4	170,913,920 - 170,932,192 (-)	NCBI
Rnor_5.0	4	235,170,739 - 235,189,606 (-)	NCBI

Sequence:

show sequence

TTGGCTAAGCTCAGGGAAAGGAAAAGCCTACCTCTGAGCTGATACCGACTGCCCTGCGTTGGTG
GAGGGGTGGCTTGTGCTGGGGTGGAGACCGTGCGGTTTCCTGTTTTTAAGCACGCTTTAAAGAG
ACTGTTTGCAAAGAGAGAAAATATGGTTCAGAGCTGTCAAATACTAAGCCATTAACACAAACAG
GGGAATTAAATTCCTGCAGTGGGATGGGCAGGAAGATATTCACTGTGACGGCCAAAAAAACAAA
GCGGCCCTCCACATCAAGGGGAACTGGCGTAGACCTGGAAGATGTGGAGAAGACTGTGGGAGAG
ACACTAGGAGAGTCTGCGTGGGCCCGGCTATAAACGTGTAAGGAACAATCAAGATGACGGAGAA
GGATGAGCAGCCACAGCTGGAGGAGGGAGAGGATGAGCTGGACAGCAAGCTCAACTACAAGCCG
CCCCCTCAGAAGTCCCTGAAGGAGCTGCAGGAGATGGACAAAGATGACGAGAGTCTAACCAAGT
ACAAGAAAACACTGCTGGGAGATGTCCCCGTGGTAGCAGACCCAACAGTTCCCAACGTGACTGT
GACCCGGCTTAGCCTTGTTTGTGACAGTGCACCAGGACCAATCACCATGGACCTTACTGGTGAT
CTCAAGGCGCTCAAAAAGGATACATTTGTGCTAAAGGAAGGTATCGAATACAGGGTCAAGATTA
ACTTCAAAGTGAATAAGGATATTGTGTCTGGCCTGAAGTATGTTCAGCAGACGTACCGGAATGG
GATGAAAGTGGATAAAGCTACGTTCATGGTTGGCAGCTACGGGCCTCGACCAGAGGAGTACGAG
TTCCTCACTCCAGTAGAGGAGGCTCCCAAGGGCATGTTGGCCCGAGGCACTTACCACAACAAGT
CCTTCTTCACCGATGATGACAAGCAGGACCACCTCACCTGGGAATGGAACCTGGCCATTAAGAA
GGATTGGACAGACTGAGTGCATCTGTCCATCCCTCCCGCCCGGACCATGTTGATCATTGCGTTC
TCCCTCCTCCCTCCCTGTTCCCTGCTGGGTCCTTTATCACACACACACACACACACACACCCCT
CATCACTGATATGTTTTATCTTACCCCATCTCTCAGAGTGTTCCCTTAAAACCCAGGCTTTAAC
CCGGCATGTTCCCTCAGACTGTCTCCCCAGAGCAGAGCAAGGCCAGAGTTCTGAAGTTCTCCAT
CTCATTTAGTGGCCTCCTCTCTTCTCCCAGTTTGAGTCCTGGAGGCCAGGAAACGGGCAAGCTG
TTGCTCATGGCTCCGTGGCCTTCTGTTCAGAAACTTATTCTTCCACTGGTTCAATGAATCTCAT
CACCCTCTCTGCCAATGGGAGCTCTTCTCTTGTGGGAGACACTGTAAACAACACCAAAGGAAAA
AATAAAACCACTGTGTGTGTGACTGAGA

hide sequence

RefSeq Acc Id:

XM_063286373 ⟹ XP_063142443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	171,554,139 - 171,570,837 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001009600	(Get FASTA)	NCBI Sequence Viewer
	XP_006237623	(Get FASTA)	NCBI Sequence Viewer
	XP_006237624	(Get FASTA)	NCBI Sequence Viewer
	XP_006237625	(Get FASTA)	NCBI Sequence Viewer
	XP_006237626	(Get FASTA)	NCBI Sequence Viewer
	XP_006237627	(Get FASTA)	NCBI Sequence Viewer
	XP_063142443	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH88209	(Get FASTA)	NCBI Sequence Viewer
	EDM01592	(Get FASTA)	NCBI Sequence Viewer
	EDM01593	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000007779.5
	ENSRNOP00000083858.1

RefSeq Acc Id:	NP_001009600 ⟸ NM_001009600
- UniProtKB:	Q5M860 (UniProtKB/TrEMBL), A6IMJ6 (UniProtKB/TrEMBL), A0A8I5ZXI2 (UniProtKB/TrEMBL), F7FLL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKDEQPQLEEGEDELDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVP NVTVTRLSLVCDSAPGPITMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQT YRNGMKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNL AIKKDWTD hide sequence

RefSeq Acc Id:	XP_006237623 ⟸ XM_006237561
- Peptide Label:	isoform X1
- UniProtKB:	Q5M860 (UniProtKB/TrEMBL), A6IMJ6 (UniProtKB/TrEMBL), A0A8I5ZXI2 (UniProtKB/TrEMBL), F7FLL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKDEQPQLEEGEDELDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVP NVTVTRLSLVCDSAPGPITMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQT YRNGMKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNL AIKKDWTD hide sequence

RefSeq Acc Id:	XP_006237625 ⟸ XM_006237563
- Peptide Label:	isoform X1
- UniProtKB:	Q5M860 (UniProtKB/TrEMBL), A6IMJ6 (UniProtKB/TrEMBL), A0A8I5ZXI2 (UniProtKB/TrEMBL), F7FLL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKDEQPQLEEGEDELDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVP NVTVTRLSLVCDSAPGPITMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQT YRNGMKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNL AIKKDWTD hide sequence

RefSeq Acc Id:	XP_006237626 ⟸ XM_006237564
- Peptide Label:	isoform X1
- UniProtKB:	Q5M860 (UniProtKB/TrEMBL), A6IMJ6 (UniProtKB/TrEMBL), A0A8I5ZXI2 (UniProtKB/TrEMBL), F7FLL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKDEQPQLEEGEDELDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVP NVTVTRLSLVCDSAPGPITMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQT YRNGMKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNL AIKKDWTD hide sequence

RefSeq Acc Id:	XP_006237624 ⟸ XM_006237562
- Peptide Label:	isoform X1
- UniProtKB:	Q5M860 (UniProtKB/TrEMBL), A6IMJ6 (UniProtKB/TrEMBL), A0A8I5ZXI2 (UniProtKB/TrEMBL), F7FLL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKDEQPQLEEGEDELDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVP NVTVTRLSLVCDSAPGPITMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQT YRNGMKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNL AIKKDWTD hide sequence

RefSeq Acc Id:	XP_006237627 ⟸ XM_006237565
- Peptide Label:	isoform X1
- UniProtKB:	Q5M860 (UniProtKB/TrEMBL), A6IMJ6 (UniProtKB/TrEMBL), A0A8I5ZXI2 (UniProtKB/TrEMBL), F7FLL0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTEKDEQPQLEEGEDELDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLGDVPVVADPTVP NVTVTRLSLVCDSAPGPITMDLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQT YRNGMKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLTWEWNL AIKKDWTD hide sequence

Ensembl Acc Id:

ENSRNOP00000007779 ⟸ ENSRNOT00000007779

Ensembl Acc Id:

ENSRNOP00000083858 ⟸ ENSRNOT00000109610

RefSeq Acc Id:	XP_063142443 ⟸ XM_063286373
- Peptide Label:	isoform X1
- UniProtKB:	A6IMJ6 (UniProtKB/TrEMBL), F7FLL0 (UniProtKB/TrEMBL), Q5M860 (UniProtKB/TrEMBL), A0A8I5ZXI2 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5M860-F1-model_v2	AlphaFold	Q5M860	1-200	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693469

Promoter ID:

EPDNEW_R3994

Type:

initiation region

Name:

Arhgdib_1

Description:

Rho GDP dissociation inhibitor beta

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	170,932,565 - 170,932,625	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1305383	AgrOrtholog
BioCyc Gene	G2FUF-42589	BioCyc
Ensembl Genes	ENSRNOG00000005809	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000007779.8	UniProtKB/TrEMBL
	ENSRNOT00000109610.1	UniProtKB/TrEMBL
Gene3D-CATH	2.70.50.30	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7382227	IMAGE-MGC_LOAD
InterPro	Ig_E-set	UniProtKB/TrEMBL
	Rho_GDI	UniProtKB/TrEMBL
	RhoGDI_domain	UniProtKB/TrEMBL
KEGG Report	rno:362456	UniProtKB/TrEMBL
MGC_CLONE	MGC:108926	IMAGE-MGC_LOAD
NCBI Gene	362456	ENTREZGENE
PANTHER	RHO GDP-DISSOCIATION INHIBITOR 2	UniProtKB/TrEMBL
	Rho_GDI	UniProtKB/TrEMBL
Pfam	Rho_GDI	UniProtKB/TrEMBL
PhenoGen	Arhgdib	PhenoGen
PRINTS	RHOGDI	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000005809	RatGTEx
Superfamily-SCOP	Ig_E-set	UniProtKB/TrEMBL
UniProt	A0A8I5ZXI2	ENTREZGENE, UniProtKB/TrEMBL
	A6IMJ6	ENTREZGENE, UniProtKB/TrEMBL
	F7FLL0	ENTREZGENE, UniProtKB/TrEMBL
	Q5M860	ENTREZGENE
UniProt Secondary	Q5M860	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-04-13	Arhgdib	Rho GDP dissociation inhibitor beta	Arhgdib	Rho, GDP dissociation inhibitor (GDI) beta	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2005-12-06	Arhgdib	Rho, GDP dissociation inhibitor (GDI) beta	Arhgdib_predicted	Rho, GDP dissociation inhibitor (GDI) beta (predicted)	Symbol and Name updated	1559027	APPROVED
2005-01-12	Arhgdib_predicted	Rho, GDP dissociation inhibitor (GDI) beta (predicted)			Symbol and Name status set to approved	70820	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)