Slc2a3 (solute carrier family 2 member 3) - Rat Genome Database

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Gene: Slc2a3 (solute carrier family 2 member 3) Rattus norvegicus
Analyze
Symbol: Slc2a3
Name: solute carrier family 2 member 3
RGD ID: 3706
Description: Exhibits several functions, including anion transmembrane transporter activity; galactoside binding activity; and monosaccharide binding activity. Involved in several processes, including organic substance transport; response to Thyroglobulin triiodothyronine; and response to glucose. Localizes to several cellular components, including caveola; integral component of synaptic membrane; and synaptic vesicle membrane. Biomarker of cataract and hypertension. Orthologous to human SLC2A3 (solute carrier family 2 member 3); PARTICIPATES IN facilitative sugar transporter mediated glucose transport pathway; INTERACTS WITH 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine; 2,4-D.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: glucose transporter type 3, brain; GLUT-3; GLUT3; LOC100909595; solute carrier family 2 (facilitated glucose transporter), member 3; Solute carrier family 2 A3 (neuron glucose transporter); solute carrier family 2, facilitated glucose transporter member 3; solute carrier family 2, facilitated glucose transporter member 3-like; solute carrier family 2, member 2; solute carrier family 2, member 3
RGD Orthologs
Human
Mouse
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,960,944 - 156,026,000 (-)NCBI
Rnor_6.0 Ensembl4155,408,233 - 155,631,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,752,447 - 155,763,500 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04155,549,991 - 155,626,018 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04222,571,240 - 222,646,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,210,116 - 159,221,169 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14159,454,954 - 159,466,184 (-)NCBI
Celera4144,783,015 - 144,794,062 (-)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (ISO)
1,4-phenylenediamine  (ISO)
1-[(4-chlorophenyl)-phenylmethyl]-4-methylpiperazine  (ISO)
1-[3-(dimethylamino)propyl]-1-(4-fluorophenyl)-1,3-dihydro-2-benzofuran-5-carbonitrile  (ISO)
1-chloro-2,4-dinitrobenzene  (ISO)
1-fluoro-2,4-dinitrobenzene  (ISO)
17beta-estradiol  (ISO)
17beta-estradiol 3-benzoate  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-D  (EXP)
2,6-di-tert-butyl-4-methylphenol  (ISO)
2-deoxy-D-glucose  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,4-methylenedioxymethamphetamine  (ISO)
3,7-dihydropurine-6-thione  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-(ethoxymethylene)-2-phenyloxazol-5-one  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (EXP,ISO)
all-trans-retinoic acid  (ISO)
alpha-D-galactose  (ISO)
amiodarone  (ISO)
amitriptyline  (ISO)
ammonium chloride  (EXP)
ampicillin  (ISO)
antirheumatic drug  (ISO)
apigenin  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenous acid  (ISO)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
Benzo[k]fluoranthene  (ISO)
benzoates  (ISO)
beta-maltose  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bortezomib  (ISO)
buta-1,3-diene  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
carbamazepine  (ISO)
chlorpromazine  (ISO)
chromium atom  (EXP)
cisplatin  (ISO)
citalopram  (ISO)
clomipramine  (ISO)
clozapine  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
crocidolite asbestos  (ISO)
curcumin  (ISO)
cyclosporin A  (EXP,ISO)
cytochalasin B  (ISO)
D-glucose  (EXP,ISO)
decabromodiphenyl ether  (EXP,ISO)
dehydroascorbic acid  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP)
dichromium trioxide  (ISO)
dioxygen  (EXP,ISO)
divanadium pentaoxide  (ISO)
dorsomorphin  (ISO)
doxepin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (ISO)
eugenol  (ISO)
fisetin  (ISO)
flecainide  (ISO)
fluoxetine  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
galactose  (ISO)
gemcitabine  (ISO)
genistein  (EXP)
glucose  (EXP,ISO)
imidacloprid  (EXP)
imipramine  (ISO)
ketoconazole  (ISO)
kynurenic acid  (ISO)
L-dehydroascorbic acid  (ISO)
lead diacetate  (EXP,ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (ISO)
Loratadine  (ISO)
luteolin  (ISO)
maltose  (ISO)
menadione  (ISO)
mercaptopurine  (EXP)
mercury dibromide  (ISO)
mercury dichloride  (EXP)
metacetamol  (ISO)
methapyrilene  (ISO)
methotrexate  (ISO)
methylmercury chloride  (ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP)
N-acetyl-beta-D-glucosamine  (ISO)
N-acetyl-D-glucosamine  (ISO)
N-acetyl-L-cysteine  (ISO)
nickel atom  (ISO)
nickel dichloride  (ISO)
nickel sulfate  (ISO)
niclosamide  (ISO)
organoselenium compound  (ISO)
oxaliplatin  (EXP,ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
paraquat  (EXP)
pentamidine  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
perhexiline  (ISO)
phenylmercury acetate  (ISO)
pioglitazone  (ISO)
potassium chromate  (ISO)
potassium dichromate  (ISO)
progesterone  (EXP,ISO)
purine-6-thiol  (EXP)
quercetin  (ISO)
quinidine  (ISO)
rac-lactic acid  (ISO)
raloxifene  (ISO)
resorcinol  (ISO)
SB 431542  (ISO)
serpentine asbestos  (ISO)
sertraline  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
sodium fluoride  (ISO)
sotalol  (ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tamoxifen  (EXP,ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetracycline  (EXP)
thalidomide  (ISO)
thimerosal  (ISO)
thioridazine  (ISO)
titanium dioxide  (ISO)
topotecan  (EXP)
torcetrapib  (ISO)
tributylstannane  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triptonide  (ISO)
troglitazone  (ISO)
tungsten  (ISO)
tunicamycin  (ISO)
uranium atom  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vandetanib  (ISO)
vorinostat  (ISO)
XL147  (ISO)
Yessotoxin  (ISO)
zidovudine  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
1. Angulo C, etal., J Cell Physiol. 2008 Dec;217(3):708-16. doi: 10.1002/jcp.21545.
2. Bouche C, etal., Endocr Rev. 2004 Oct;25(5):807-30.
3. Campbell IW, etal., Biochem Biophys Res Commun. 1995 Jun 26;211(3):780-91.
4. Cidad P, etal., Biochem J. 2004 Dec 15;384(Pt 3):629-36.
5. Fattoretti P, etal., Ann N Y Acad Sci 2002 Nov;973:293-6.
6. Ferreira JM, etal., J Neurosci. 2011 Feb 9;31(6):1991-9. doi: 10.1523/JNEUROSCI.1850-09.2011.
7. GOA data from the GO Consortium
8. Hamlin GP, etal., J Neurotrauma 2001 Oct;18(10):1011-8.
9. Hou WK, etal., Chin Med J (Engl). 2007 Oct 5;120(19):1704-9.
10. Kipmen-Korgun D, etal., Scand J Clin Lab Invest. 2009;69(3):350-8.
11. Langdown ML and Sugden MC, Mol Cell Endocrinol 2001 Dec 20;185(1-2):109-17.
12. Maher F, etal., Biochem J. 1996 May 1;315 ( Pt 3):827-31.
13. Merriman-Smith BR, etal., Invest Ophthalmol Vis Sci. 2003 Aug;44(8):3458-66.
14. MGD data from the GO Consortium
15. Nagamatsu S, etal., FEBS Lett 1993 Nov 22;334(3):289-95.
16. NCBI rat LocusLink and RefSeq merged data July 26, 2002
17. Pearson-Leary J and McNay EC, J Neurosci. 2016 Nov 23;36(47):11851-11864. doi: 10.1523/JNEUROSCI.1700-16.2016.
18. Rauch MC, etal., J Cell Physiol. 2006 May;207(2):397-406.
19. RGD automated data pipeline
20. RGD automated import pipeline for gene-chemical interactions
21. SantalucĂ­a T, etal., Mol Cell Endocrinol. 2006 Jun 7;251(1-2):9-16. Epub 2006 Apr 3.
22. Sato Y, etal., Tissue Cell. 1996 Dec;28(6):637-43.
23. Scheepers A, etal., JPEN J Parenter Enteral Nutr. 2004 Sep-Oct;28(5):364-71.
24. Sciullo E, etal., Early Pregnancy. 1997 Sep;3(3):172-82.
25. Shin BC, etal., Endocrinology. 1997 Sep;138(9):3997-4004.
26. Simpson IA, etal., Ann Neurol. 1994 May;35(5):546-51.
27. Stuart CA, etal., Metabolism. 2001 Jul;50(7):771-7.
28. Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
29. Thoidis G, etal., J Biol Chem. 1999 May 14;274(20):14062-6.
30. Zhang WW, etal., Chin Med J (Engl). 2009 Sep 5;122(17):1996-2001.
Additional References at PubMed
PMID:7475896   PMID:8457197   PMID:9228080   PMID:9477959   PMID:10862609   PMID:12477932   PMID:12506324   PMID:15033779   PMID:17213475   PMID:17416968   PMID:18084728   PMID:18474279  
PMID:18957618   PMID:19144954   PMID:19681047   PMID:20175235   PMID:20458337   PMID:20813712   PMID:21141602   PMID:21321936   PMID:21624469   PMID:22104347   PMID:22258767   PMID:22605548  
PMID:22871113   PMID:23851016   PMID:23975336   PMID:24382486   PMID:26176916   PMID:29582588   PMID:30296507  


Genomics

Comparative Map Data
Slc2a3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24155,960,944 - 156,026,000 (-)NCBI
Rnor_6.0 Ensembl4155,408,233 - 155,631,856 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl4155,752,447 - 155,763,500 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.04155,549,991 - 155,626,018 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.04222,571,240 - 222,646,977 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44159,210,116 - 159,221,169 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.14159,454,954 - 159,466,184 (-)NCBI
Celera4144,783,015 - 144,794,062 (-)NCBICelera
Cytogenetic Map4q42NCBI
SLC2A3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl127,919,230 - 7,936,187 (-)EnsemblGRCh38hg38GRCh38
GRCh38127,919,230 - 7,936,187 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37128,071,826 - 8,088,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36127,963,094 - 7,980,138 (-)NCBINCBI36hg18NCBI36
Build 34127,963,093 - 7,980,138NCBI
Celera129,649,416 - 9,666,481 (-)NCBI
Cytogenetic Map12p13.31NCBI
HuRef127,884,929 - 7,901,971 (-)NCBIHuRef
CHM1_1128,070,777 - 8,087,842 (-)NCBICHM1_1
Slc2a3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396122,704,768 - 122,779,322 (-)NCBIGRCm39mm39
GRCm39 Ensembl6122,704,768 - 122,778,599 (-)Ensembl
GRCm386122,727,809 - 122,802,363 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6122,727,809 - 122,801,640 (-)EnsemblGRCm38mm10GRCm38
MGSCv376122,677,827 - 122,692,763 (-)NCBIGRCm37mm9NCBIm37
MGSCv366122,693,445 - 122,708,138 (-)NCBImm8
Celera6124,528,542 - 124,543,474 (-)NCBICelera
Cytogenetic Map6F2NCBI
cM Map657.82NCBI
SLC2A3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12737,297,932 - 37,309,604 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2737,297,932 - 37,428,410 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha279,222,336 - 9,318,492 (+)NCBI
ROS_Cfam_1.02737,650,602 - 37,746,936 (-)NCBI
UMICH_Zoey_3.12737,530,947 - 37,622,282 (-)NCBI
UNSW_CanFamBas_1.02737,566,515 - 37,663,318 (-)NCBI
UU_Cfam_GSD_1.0278,709,301 - 8,801,490 (+)NCBI
SLC2A3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1562,963,635 - 63,041,955 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2565,800,940 - 65,810,870 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC2A3
(Chlorocebus sabaeus - African green monkey)
Vervet AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1118,004,861 - 8,023,023 (-)NCBI
Slc2a3
(Heterocephalus glaber - naked mole-rat)
Molerat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248605,069,246 - 5,153,435 (-)NCBI

Position Markers
UniSTS:144426  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.04155,552,144 - 155,552,305NCBIRnor6.0
Rnor_6.04155,752,471 - 155,752,632NCBIRnor6.0
Rnor_5.04222,773,237 - 222,773,398UniSTSRnor5.0
Rnor_5.04222,573,393 - 222,573,554UniSTSRnor5.0
RGSC_v3.44159,210,140 - 159,210,301UniSTSRGSC3.4
Celera4144,783,039 - 144,783,200UniSTS
Cytogenetic Map4q42UniSTS
Slc2a3  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.04155,552,045 - 155,552,166NCBIRnor6.0
Rnor_6.04155,752,372 - 155,752,493NCBIRnor6.0
Rnor_5.04222,773,138 - 222,773,259UniSTSRnor5.0
Rnor_5.04222,573,294 - 222,573,415UniSTSRnor5.0
RGSC_v3.44159,210,041 - 159,210,162UniSTSRGSC3.4
Celera4144,782,940 - 144,783,061UniSTS
Cytogenetic Map4q42UniSTS
PMC20520P1  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.04155,552,022 - 155,552,304NCBIRnor6.0
Rnor_6.04155,752,349 - 155,752,631NCBIRnor6.0
Rnor_5.04222,773,115 - 222,773,397UniSTSRnor5.0
Rnor_5.04222,573,271 - 222,573,553UniSTSRnor5.0
RGSC_v3.44159,210,018 - 159,210,300UniSTSRGSC3.4
Celera4144,782,917 - 144,783,199UniSTS
Cytogenetic Map4q42UniSTS


QTLs in Region (Rnor_6.0)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)47850904182171018Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)423850384169318094Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)463537179157286626Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)484475257178931073Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486438317168047091Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494893247168046938Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4105971071168047091Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4108876717169215811Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110702761155702761Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4112807675157807675Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4116726724157291438Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4117926139162926139Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4123111827168111827Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123478354168478354Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4123587009168587009Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4124442168169442168Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4125884464168047091Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4128602727173602727Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131532269168047091Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4131834282176834282Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4131864442176864442Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132455408168047091Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (VE) (CMO:0000132)4134917642179917642Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4136351734174694858Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4136351734180689124Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4136908430182878540Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)4137171018182171018Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4145373934176509907Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4145547014184226339Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4145547014184226339Rat
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4145547014184226339Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146086918168047091Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4146497452184226339Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4146942075168998263Rat
61446Coreg2Compensatory renal growth QTL 23.5kidney mass (VT:0002707)compensatory renal growth score (CMO:0001894)4147274055157294090Rat
1581574Eae20Experimental allergic encephalomyelitis QTL 207.8nervous system integrity trait (VT:0010566)percentage of study population developing experimental autoimmune encephalomyelitis during a period of time (CMO:0001047)4152482121158564471Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155386197184226339Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155386197184226339Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155386197184226339Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155386197184226339Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155386197184226339Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155386197184226339Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155386197184226339Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:148
Count of miRNA genes:67
Interacting mature miRNAs:77
Transcripts:ENSRNOT00000011298, ENSRNOT00000071745
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 4 23 16 9 16 72 24
Low 3 39 19 10 10 10 8 11 2 34 17 11 8
Below cutoff 15 15 15 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000011298   ⟹   ENSRNOP00000011298
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4155,552,013 - 155,563,249 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000071745   ⟹   ENSRNOP00000066684
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4155,752,447 - 155,763,500 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000085447   ⟹   ENSRNOP00000070121
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4155,408,233 - 155,561,324 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000088270   ⟹   ENSRNOP00000069413
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl4155,549,986 - 155,631,856 (-)Ensembl
RefSeq Acc Id: NM_017102   ⟹   NP_058798
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,963,073 - 155,974,120 (-)NCBI
Rnor_6.04155,552,120 - 155,563,167 (-)NCBI
Rnor_5.04222,571,240 - 222,646,977 (-)NCBI
RGSC_v3.44159,210,116 - 159,221,169 (-)RGD
Celera4144,783,015 - 144,794,062 (-)RGD
Sequence:
RefSeq Acc Id: XM_006237295   ⟹   XP_006237357
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,960,944 - 156,025,473 (-)NCBI
Rnor_6.04155,549,991 - 155,625,465 (-)NCBI
Rnor_5.04222,571,240 - 222,646,977 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237296   ⟹   XP_006237358
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,960,944 - 156,026,000 (-)NCBI
Rnor_6.04155,549,991 - 155,626,018 (-)NCBI
Rnor_5.04222,571,240 - 222,646,977 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237297   ⟹   XP_006237359
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04155,549,991 - 155,625,465 (-)NCBI
Rnor_5.04222,571,240 - 222,646,977 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006237298   ⟹   XP_006237360
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24155,960,944 - 156,024,811 (-)NCBI
Rnor_6.04155,549,991 - 155,625,138 (-)NCBI
Rnor_5.04222,571,240 - 222,646,977 (-)NCBI
Sequence:
Reference Sequences
RefSeq Acc Id: NP_058798   ⟸   NM_017102
- UniProtKB: Q07647 (UniProtKB/Swiss-Prot),   A0A0G2JSJ3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237358   ⟸   XM_006237296
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237357   ⟸   XM_006237295
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006237359   ⟸   XM_006237297
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006237360   ⟸   XM_006237298
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVB0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000070121   ⟸   ENSRNOT00000085447
RefSeq Acc Id: ENSRNOP00000011298   ⟸   ENSRNOT00000011298
RefSeq Acc Id: ENSRNOP00000069413   ⟸   ENSRNOT00000088270
RefSeq Acc Id: ENSRNOP00000066684   ⟸   ENSRNOT00000071745
Protein Domains
MFS

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693371
Promoter ID:EPDNEW_R3895
Type:single initiation site
Name:Slc2a3_1
Description:solute carrier family 2 member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3896  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04155,563,290 - 155,563,350EPDNEW
RGD ID:13693386
Promoter ID:EPDNEW_R3896
Type:initiation region
Name:Slc2a3_2
Description:solute carrier family 2 member 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3895  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04155,631,808 - 155,631,868EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LE/Stm (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
M520/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MHS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
SBH/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHRSP/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/Gcrc (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3706 AgrOrtholog
  RGD:6502547 AgrOrtholog
Ensembl Genes ENSRNOG00000008376 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000049298 Ensembl, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000011298 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000066684 UniProtKB/TrEMBL
  ENSRNOP00000069413 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOP00000070121 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000011298 ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOT00000071745 UniProtKB/TrEMBL
  ENSRNOT00000085447 UniProtKB/TrEMBL
  ENSRNOT00000088270 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:6887820 IMAGE-MGC_LOAD
InterPro Glc_transpt_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_sugar_transport-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MFS_trans_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sugar/inositol_transpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Sugar_transporter_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:100909595 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  rno:25551 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGC_CLONE MGC:72866 IMAGE-MGC_LOAD
NCBI Gene 25551 ENTREZGENE
Pfam Sugar_tr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc2a3 PhenoGen
PRINTS GLUCTRSPORT3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUGRTRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE MFS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUGAR_TRANSPORT_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SUGAR_TRANSPORT_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF103473 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC228128
TIGRFAMs TIGR00879 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2JSJ3 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JVB0 ENTREZGENE, UniProtKB/TrEMBL
  A0A0G2JX37_RAT UniProtKB/TrEMBL
  GTR3_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  Q6P506_RAT UniProtKB/TrEMBL
UniProt Secondary Q62729 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Slc2a3  solute carrier family 2 member 3  LOC100909595  solute carrier family 2, facilitated glucose transporter member 3-like  Data Merged 737654 PROVISIONAL
2016-02-24 Slc2a3  solute carrier family 2 member 3  Slc2a3  solute carrier family 2 (facilitated glucose transporter), member 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100909595  solute carrier family 2, facilitated glucose transporter member 3-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2004-09-10 Slc2a3  solute carrier family 2 (facilitated glucose transporter), member 3    solute carrier family 2, member 2  Name updated 1299863 APPROVED
2003-04-09 Slc2a3  solute carrier family 2, member 2    Solute carrier family 2 A3 (neuron glucose transporter)  Name updated 629478 APPROVED
2002-06-10 Slc2a3  Solute carrier family 2 A3 (neuron glucose transporter)      Symbol and Name status set to approved 70586 APPROVED