Snrpg (small nuclear ribonucleoprotein polypeptide G) - Rat Genome Database

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Gene: Snrpg (small nuclear ribonucleoprotein polypeptide G) Rattus norvegicus
Analyze
Symbol: Snrpg (Ensembl: LOC687679)
Name: small nuclear ribonucleoprotein polypeptide G (Ensembl:similar to small nuclear ribonucleoprotein polypeptide G)
RGD ID: 1584713
Description: Enables U1 snRNP binding activity. Predicted to be involved in spliceosomal snRNP assembly. Part of U1 snRNP. Orthologous to human SNRPG (small nuclear ribonucleoprotein polypeptide G); PARTICIPATES IN spliceosome pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC681031; MGC188855; similar to small nuclear ribonucleoprotein polypeptide G; small nuclear ribonucleoprotein G
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Snrpg-ps1   Snrpg-ps8  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,369,676 - 120,377,263 (+)NCBIGRCr8
mRatBN7.24118,812,278 - 118,819,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,812,252 - 118,819,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,285,070 - 124,292,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,059,817 - 120,067,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,684,074 - 118,691,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,167,267 - 118,174,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,167,294 - 118,174,842 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,738,544 - 182,746,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,549,595 - 120,557,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4107,783,995 - 107,791,544 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
C60 fullerene  (EXP)
casticin  (ISO)
chloropicrin  (ISO)
chlorpyrifos  (ISO)
choline  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
dexamethasone  (ISO)
diuron  (ISO)
epoxiconazole  (ISO)
ethanol  (ISO)
fenthion  (ISO)
finasteride  (EXP)
fipronil  (EXP)
flutamide  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
gentamycin  (EXP)
hydralazine  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
L-methionine  (ISO)
lead(0)  (ISO)
leflunomide  (EXP)
methidathion  (ISO)
methimazole  (EXP)
nefazodone  (EXP)
nimesulide  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorodecanoic acid  (ISO)
PhIP  (EXP)
pinosylvin  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
pyrimidifen  (ISO)
rotenone  (ISO)
sodium arsenite  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
tolcapone  (EXP)
toluene  (EXP)
topotecan  (EXP)
trans-pinosylvin  (ISO)
triadimefon  (EXP)
tungsten  (ISO)
valdecoxib  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Low-molecular-mass secretome profiling identifies C-C motif chemokine 5 as a potential plasma biomarker and therapeutic target for nasopharyngeal carcinoma. Lin SJ, etal., J Proteomics. 2013 Dec 6;94:186-201. doi: 10.1016/j.jprot.2013.09.013. Epub 2013 Sep 27.
4. Separation of nuclear protein complexes by blue native polyacrylamide gel electrophoresis. Novakova Z, etal., Electrophoresis. 2006 Apr;27(7):1277-87.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Comprehensive gene review and curation RGD comprehensive gene curation
9. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
Additional References at PubMed
PMID:8889548   PMID:11574479   PMID:11991638   PMID:12477932   PMID:15146077   PMID:18984161   PMID:21113136   PMID:21516107   PMID:22658674   PMID:25555158   PMID:26912367   PMID:28076346  
PMID:28781166  


Genomics

Comparative Map Data
Snrpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,369,676 - 120,377,263 (+)NCBIGRCr8
mRatBN7.24118,812,278 - 118,819,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,812,252 - 118,819,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,285,070 - 124,292,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,059,817 - 120,067,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,684,074 - 118,691,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,167,267 - 118,174,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,167,294 - 118,174,842 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,738,544 - 182,746,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,549,595 - 120,557,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4107,783,995 - 107,791,544 (+)NCBICelera
Cytogenetic Map4q34NCBI
SNRPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,281,362 - 70,293,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,281,362 - 70,293,740 (-)EnsemblGRCh38hg38GRCh38
GRCh37270,508,494 - 70,520,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,362,009 - 70,374,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 34270,420,160 - 70,432,520NCBI
Celera270,359,201 - 70,371,560 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,245,355 - 70,257,711 (-)NCBIHuRef
CHM1_1270,438,091 - 70,450,483 (-)NCBICHM1_1
T2T-CHM13v2.0270,293,098 - 70,305,490 (-)NCBIT2T-CHM13v2.0
Snrpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,348,522 - 86,355,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,348,286 - 86,356,310 (+)EnsemblGRCm39 Ensembl
GRCm38686,371,540 - 86,378,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,371,304 - 86,379,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,321,534 - 86,328,896 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,337,174 - 86,344,536 (+)NCBIMGSCv36mm8
Celera688,309,182 - 88,316,544 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.69NCBI
Snrpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,844,318 - 14,851,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,844,318 - 14,851,720 (+)NCBIChiLan1.0ChiLan1.0
SNRPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,104,142 - 56,116,723 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,108,372 - 56,120,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,335,547 - 70,347,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,451,219 - 71,463,884 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,451,225 - 71,463,884 (-)Ensemblpanpan1.1panPan2
SNRPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,826,250 - 68,836,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,897,632 - 68,897,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,826,250 - 68,836,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,714,060 - 68,724,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,848,188 - 69,858,520 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,848,184 - 69,920,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,565,521 - 69,575,854 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,828,636 - 69,839,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,127,516 - 70,137,844 (-)NCBIUU_Cfam_GSD_1.0
Snrpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,120,539 - 14,128,388 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,443,026 - 14,450,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,442,904 - 14,450,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,198,756 - 72,208,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,198,722 - 72,208,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,469,789 - 75,477,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,823,959 - 36,858,240 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,826,779 - 36,837,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,174,276 - 75,186,417 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,157,796 - 3,164,084 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,157,769 - 3,164,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Snrpg
29 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:106
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000022367
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat

Markers in Region
RH127847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24118,810,806 - 118,810,997 (+)MAPPERmRatBN7.2
Rnor_6.04118,165,823 - 118,166,013NCBIRnor6.0
Rnor_5.04182,737,073 - 182,737,263UniSTSRnor5.0
RGSC_v3.44120,547,442 - 120,547,632UniSTSRGSC3.4
Celera4107,782,524 - 107,782,714UniSTS
RH 3.4 Map4686.63UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
18 14 86 199 150 148 102 34 102 12 366 158 167 80 113 46

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001135085 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC168750 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BI285268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ217038 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221827 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222427 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ222653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223239 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223409 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228534 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000022367   ⟹   ENSRNOP00000022367
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4118,812,252 - 118,819,826 (+)Ensembl
Rnor_6.0 Ensembl4118,167,294 - 118,174,842 (+)Ensembl
RefSeq Acc Id: NM_001135085   ⟹   NP_001128557
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,369,711 - 120,377,260 (+)NCBI
mRatBN7.24118,812,278 - 118,819,827 (+)NCBI
Rnor_6.04118,167,294 - 118,174,843 (+)NCBI
Rnor_5.04182,738,544 - 182,746,093 (+)NCBI
RGSC_v3.44120,549,595 - 120,557,144 (+)RGD
Celera4107,783,995 - 107,791,544 (+)RGD
Sequence:
RefSeq Acc Id: XM_063286681   ⟹   XP_063142751
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,369,737 - 120,377,263 (+)NCBI
RefSeq Acc Id: XM_063286682   ⟹   XP_063142752
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,369,819 - 120,377,263 (+)NCBI
RefSeq Acc Id: XM_063286683   ⟹   XP_063142753
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,369,676 - 120,377,263 (+)NCBI
RefSeq Acc Id: NP_001128557   ⟸   NM_001135085
- UniProtKB: B5DEP7 (UniProtKB/TrEMBL),   A0A8I5ZRW0 (UniProtKB/TrEMBL),   A6IAV9 (UniProtKB/TrEMBL),   F7F7T6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022367   ⟸   ENSRNOT00000022367
RefSeq Acc Id: XP_063142753   ⟸   XM_063286683
- Peptide Label: isoform X2
- UniProtKB: A6IAW0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142751   ⟸   XM_063286681
- Peptide Label: isoform X1
- UniProtKB: A6IAW1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142752   ⟸   XM_063286682
- Peptide Label: isoform X1
- UniProtKB: A6IAW1 (UniProtKB/TrEMBL)
Protein Domains
Sm

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B5DEP7-F1-model_v2 AlphaFold B5DEP7 1-76 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693206
Promoter ID:EPDNEW_R3731
Type:initiation region
Name:Snrpg_1
Description:small nuclear ribonucleoprotein polypeptide G
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04118,167,276 - 118,167,336EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1584713 AgrOrtholog
BioCyc Gene G2FUF-43903 BioCyc
Ensembl Genes ENSRNOG00000016507 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000032232 UniProtKB/TrEMBL
  ENSRNOG00000065591 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022367.4 UniProtKB/TrEMBL
  ENSRNOT00000050931.4 UniProtKB/TrEMBL
  ENSRNOT00000091088.2 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  Lsm7/SmG-like UniProtKB/TrEMBL
  LSM_domain UniProtKB/TrEMBL
  LSM_related_domain UniProtKB/TrEMBL
  Sm_G UniProtKB/TrEMBL
KEGG Report rno:681031 UniProtKB/TrEMBL
NCBI Gene 681031 ENTREZGENE
PANTHER PTHR10553 UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN G-RELATED UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PhenoGen Snrpg PhenoGen
PIRSF U6_snRNA_Lsm7 UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000016507 RatGTEx
  ENSRNOG00000032232 RatGTEx
  ENSRNOG00000065591 RatGTEx
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP Sm_like_riboprot UniProtKB/TrEMBL
UniProt A0A8I5ZRW0 ENTREZGENE, UniProtKB/TrEMBL
  A6IAV9 ENTREZGENE
  A6IAW0 ENTREZGENE, UniProtKB/TrEMBL
  A6IAW1 ENTREZGENE, UniProtKB/TrEMBL
  B5DEP7 ENTREZGENE, UniProtKB/TrEMBL
  F7F7T6 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A6IAV9 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-01-19 Snrpg  small nuclear ribonucleoprotein polypeptide G  LOC681031  similar to small nuclear ribonucleoprotein polypeptide G  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC681031  similar to small nuclear ribonucleoprotein polypeptide G  LOC686174  similar to small nuclear ribonucleoprotein polypeptide G  Data merged from RGD:1585428 1643240 APPROVED
2006-11-19 LOC681031  similar to small nuclear ribonucleoprotein polypeptide G      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686174  similar to small nuclear ribonucleoprotein polypeptide G      Symbol and Name status set to provisional 70820 PROVISIONAL