Snrpg (small nuclear ribonucleoprotein polypeptide G) - Rat Genome Database

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Gene: Snrpg (small nuclear ribonucleoprotein polypeptide G) Chinchilla lanigera
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Symbol: Snrpg
Name: small nuclear ribonucleoprotein polypeptide G
RGD ID: 8999377
Description: ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA splicing, via spliceosome (ortholog); spliceosomal snRNP assembly (ortholog); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); nasopharynx carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); cytosol (ortholog); methylosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein G
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,844,318 - 14,851,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,844,318 - 14,851,720 (+)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,844,318 - 14,851,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,844,318 - 14,851,720 (+)NCBIChiLan1.0ChiLan1.0
SNRPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,281,362 - 70,293,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,281,362 - 70,293,740 (-)EnsemblGRCh38hg38GRCh38
GRCh37270,508,494 - 70,520,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,362,009 - 70,374,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 34270,420,160 - 70,432,520NCBI
Celera270,359,201 - 70,371,560 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,245,355 - 70,257,711 (-)NCBIHuRef
CHM1_1270,438,091 - 70,450,483 (-)NCBICHM1_1
T2T-CHM13v2.0270,293,098 - 70,305,490 (-)NCBIT2T-CHM13v2.0
Snrpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,348,522 - 86,355,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,348,286 - 86,356,310 (+)EnsemblGRCm39 Ensembl
GRCm38686,371,540 - 86,378,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,371,304 - 86,379,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,321,534 - 86,328,896 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,337,174 - 86,344,536 (+)NCBIMGSCv36mm8
Celera688,309,182 - 88,316,544 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.69NCBI
Snrpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,369,676 - 120,377,263 (+)NCBIGRCr8
mRatBN7.24118,812,278 - 118,819,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX69,015,881 - 69,016,111 (+)EnsemblmRatBN7.2 Ensembl
mRatBN7.2 Ensembl4118,812,252 - 118,819,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,285,070 - 124,292,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,059,817 - 120,067,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,684,074 - 118,691,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,167,267 - 118,174,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,167,294 - 118,174,842 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,738,544 - 182,746,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,549,595 - 120,557,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4107,783,995 - 107,791,544 (+)NCBICelera
Cytogenetic Map4q34NCBI
SNRPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,104,142 - 56,116,723 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,108,372 - 56,120,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,335,547 - 70,347,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,451,219 - 71,463,884 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,451,225 - 71,463,884 (-)Ensemblpanpan1.1panPan2
SNRPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,826,250 - 68,836,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,897,632 - 68,897,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,826,250 - 68,836,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,714,060 - 68,724,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,848,188 - 69,858,520 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,848,184 - 69,920,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,565,521 - 69,575,854 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,828,636 - 69,839,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,127,516 - 70,137,844 (-)NCBIUU_Cfam_GSD_1.0
Snrpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,120,539 - 14,128,388 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,443,026 - 14,450,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,442,904 - 14,450,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,198,756 - 72,208,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,198,722 - 72,208,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,469,789 - 75,477,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,823,959 - 36,858,240 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,826,779 - 36,837,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,174,276 - 75,186,417 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,157,796 - 3,164,084 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,157,769 - 3,164,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSCLAT00000017981   ⟹   ENSCLAP00000017805
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495542414,844,318 - 14,851,720 (+)Ensembl
RefSeq Acc Id: XM_005385616   ⟹   XP_005385673
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495542414,844,318 - 14,851,720 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005385673 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000017805
  ENSCLAP00000017805.1
RefSeq Acc Id: XP_005385673   ⟸   XM_005385616
- UniProtKB: A0A8C2VRI5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCLAP00000017805   ⟸   ENSCLAT00000017981
Protein Domains
Sm


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000012216 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000017981 ENTREZGENE
  ENSCLAT00000017981.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  Lsm7/SmG-like UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  Sm_G UniProtKB/TrEMBL
NCBI Gene Snrpg ENTREZGENE
PANTHER PTHR10553 UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN G-RELATED UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PIRSF U6_snRNA_Lsm7 UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8C2VRI5 ENTREZGENE, UniProtKB/TrEMBL