Snrpg (small nuclear ribonucleoprotein polypeptide G) - Rat Genome Database

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Gene: Snrpg (small nuclear ribonucleoprotein polypeptide G) Heterocephalus glaber
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Symbol: Snrpg
Name: small nuclear ribonucleoprotein polypeptide G
RGD ID: 18931661
Description: ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); nasopharynx carcinoma (ortholog); FOUND IN methylosome (ortholog); nucleoplasm (ortholog); U1 snRNP (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: small nuclear ribonucleoprotein G
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,157,796 - 3,164,084 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,157,769 - 3,164,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Snrpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,157,796 - 3,164,084 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,157,769 - 3,164,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
SNRPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,281,362 - 70,293,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,281,362 - 70,293,740 (-)EnsemblGRCh38hg38GRCh38
GRCh37270,508,494 - 70,520,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,362,009 - 70,374,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 34270,420,160 - 70,432,520NCBI
Celera270,359,201 - 70,371,560 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,245,355 - 70,257,711 (-)NCBIHuRef
CHM1_1270,438,091 - 70,450,483 (-)NCBICHM1_1
T2T-CHM13v2.0270,293,098 - 70,305,490 (-)NCBIT2T-CHM13v2.0
Snrpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,348,522 - 86,355,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,348,286 - 86,356,310 (+)EnsemblGRCm39 Ensembl
GRCm38686,371,540 - 86,378,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,371,304 - 86,379,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,321,534 - 86,328,896 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,337,174 - 86,344,536 (+)NCBIMGSCv36mm8
Celera688,309,182 - 88,316,544 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.69NCBI
Snrpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,369,676 - 120,377,263 (+)NCBIGRCr8
mRatBN7.24118,812,278 - 118,819,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,812,252 - 118,819,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,285,070 - 124,292,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,059,817 - 120,067,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,684,074 - 118,691,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,167,267 - 118,174,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,167,294 - 118,174,842 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,738,544 - 182,746,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,549,595 - 120,557,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4107,783,995 - 107,791,544 (+)NCBICelera
Cytogenetic Map4q34NCBI
Snrpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,844,318 - 14,851,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,844,318 - 14,851,720 (+)NCBIChiLan1.0ChiLan1.0
SNRPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,104,142 - 56,116,723 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,108,372 - 56,120,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,335,547 - 70,347,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,451,219 - 71,463,884 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,451,225 - 71,463,884 (-)Ensemblpanpan1.1panPan2
SNRPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,826,250 - 68,836,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,897,632 - 68,897,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,826,250 - 68,836,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,714,060 - 68,724,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,848,188 - 69,858,520 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,848,184 - 69,920,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,565,521 - 69,575,854 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,828,636 - 69,839,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,127,516 - 70,137,844 (-)NCBIUU_Cfam_GSD_1.0
Snrpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,120,539 - 14,128,388 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,443,026 - 14,450,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,442,904 - 14,450,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,198,756 - 72,208,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,198,722 - 72,208,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,469,789 - 75,477,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,823,959 - 36,858,240 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,826,779 - 36,837,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,174,276 - 75,186,417 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSHGLT00000008055   ⟹   ENSHGLP00000007967
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247623,157,796 - 3,164,084 (+)Ensembl
RefSeq Acc Id: XM_004849909   ⟹   XP_004849966
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247623,157,769 - 3,164,084 (+)NCBI
Protein Sequences
Protein RefSeqs XP_004849966 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000007967
  ENSHGLP00000040369
  ENSHGLP00100046480
GenBank Protein JAO03419 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_004849966   ⟸   XM_004849909
- UniProtKB: A0A0P6JIP8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000007967   ⟸   ENSHGLT00000008055


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005767 Ensembl, ENTREZGENE
  ENSHGLG00000033071 UniProtKB/TrEMBL
  ENSHGLG00100047125 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000008055 ENTREZGENE
  ENSHGLT00000073083 UniProtKB/TrEMBL
  ENSHGLT00100077935 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  Lsm7/SmG-like UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  Sm_G UniProtKB/TrEMBL
KEGG Report hgl:101724662 UniProtKB/TrEMBL
NCBI Gene Snrpg ENTREZGENE
PANTHER PTHR10553 UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN G-RELATED UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PIRSF U6_snRNA_Lsm7 UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A0P6JIP8 ENTREZGENE, UniProtKB/TrEMBL