SNRPG (small nuclear ribonucleoprotein polypeptide G) - Rat Genome Database

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Gene: SNRPG (small nuclear ribonucleoprotein polypeptide G) Canis lupus familiaris
Analyze
Symbol: SNRPG
Name: small nuclear ribonucleoprotein polypeptide G
RGD ID: 12315565
Description: ENCODES a protein that exhibits U1 snRNP binding (ortholog); INVOLVED IN mRNA processing (inferred); mRNA splicing, via spliceosome (inferred); RNA splicing (inferred); PARTICIPATES IN spliceosome pathway; ASSOCIATED WITH Animal Disease Models (ortholog); lung adenocarcinoma (ortholog); nasopharynx carcinoma (ortholog); FOUND IN catalytic step 2 spliceosome (ortholog); methylosome (ortholog); nucleoplasm (ortholog)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: small nuclear ribonucleoprotein G
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,826,250 - 68,836,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,897,632 - 68,897,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,826,250 - 68,836,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,714,060 - 68,724,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,848,188 - 69,858,520 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,848,184 - 69,920,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,565,521 - 69,575,854 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,828,636 - 69,839,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,127,516 - 70,137,844 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SNRPG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,826,250 - 68,836,755 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,897,632 - 68,897,862 (-)EnsemblCanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,826,250 - 68,836,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,714,060 - 68,724,544 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,848,188 - 69,858,520 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,848,184 - 69,920,293 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,565,521 - 69,575,854 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,828,636 - 69,839,161 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01070,127,516 - 70,137,844 (-)NCBIUU_Cfam_GSD_1.0
SNRPG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38270,281,362 - 70,293,740 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl270,281,362 - 70,293,740 (-)EnsemblGRCh38hg38GRCh38
GRCh37270,508,494 - 70,520,872 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36270,362,009 - 70,374,373 (-)NCBINCBI36Build 36hg18NCBI36
Build 34270,420,160 - 70,432,520NCBI
Celera270,359,201 - 70,371,560 (-)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef270,245,355 - 70,257,711 (-)NCBIHuRef
CHM1_1270,438,091 - 70,450,483 (-)NCBICHM1_1
T2T-CHM13v2.0270,293,098 - 70,305,490 (-)NCBIT2T-CHM13v2.0
Snrpg
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,348,522 - 86,355,884 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,348,286 - 86,356,310 (+)EnsemblGRCm39 Ensembl
GRCm38686,371,540 - 86,378,902 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,371,304 - 86,379,328 (+)EnsemblGRCm38mm10GRCm38
MGSCv37686,321,534 - 86,328,896 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,337,174 - 86,344,536 (+)NCBIMGSCv36mm8
Celera688,309,182 - 88,316,544 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.69NCBI
Snrpg
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,369,676 - 120,377,263 (+)NCBIGRCr8
mRatBN7.24118,812,278 - 118,819,827 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4118,812,252 - 118,819,826 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,285,070 - 124,292,613 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,059,817 - 120,067,360 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04118,684,074 - 118,691,617 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,167,267 - 118,174,846 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,167,294 - 118,174,842 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04182,738,544 - 182,746,093 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,549,595 - 120,557,144 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4107,783,995 - 107,791,544 (+)NCBICelera
Cytogenetic Map4q34NCBI
Snrpg
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542414,844,318 - 14,851,720 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542414,844,318 - 14,851,720 (+)NCBIChiLan1.0ChiLan1.0
SNRPG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,104,142 - 56,116,723 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,108,372 - 56,120,668 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A70,335,547 - 70,347,970 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A71,451,219 - 71,463,884 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A71,451,225 - 71,463,884 (-)Ensemblpanpan1.1panPan2
Snrpg
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,120,539 - 14,128,388 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649114,443,026 - 14,450,631 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649114,442,904 - 14,450,717 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SNRPG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,198,756 - 72,208,865 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,198,722 - 72,208,053 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2375,469,789 - 75,477,804 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SNRPG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11436,823,959 - 36,858,240 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1436,826,779 - 36,837,137 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604575,174,276 - 75,186,417 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Snrpg
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,157,796 - 3,164,084 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,157,769 - 3,164,084 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SNRPG
196 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
12 10 8 46 44 32 12 12 12 12 63 41 24 28 20

Sequence


Ensembl Acc Id: ENSCAFT00000005389   ⟹   ENSCAFP00000044334
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1068,897,632 - 68,897,862 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000047988   ⟹   ENSCAFP00000038933
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1068,826,250 - 68,836,755 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000065475   ⟹   ENSCAFP00000046779
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1068,827,434 - 68,833,253 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000068815   ⟹   ENSCAFP00000065657
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1068,826,455 - 68,836,755 (-)Ensembl
Ensembl Acc Id: ENSCAFT00000088181   ⟹   ENSCAFP00000050336
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1068,826,455 - 68,833,253 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845048910   ⟹   ENSCAFP00845038367
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1069,848,184 - 69,920,293 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845048968   ⟹   ENSCAFP00845038414
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1069,848,188 - 69,858,520 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845048997   ⟹   ENSCAFP00845038439
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1069,848,394 - 69,858,520 (-)Ensembl
RefSeq Acc Id: NM_001252331   ⟹   NP_001239260
RefSeq Status: VALIDATED
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11068,826,250 - 68,836,755 (-)NCBI
Dog10K_Boxer_Tasha1068,714,060 - 68,724,544 (-)NCBI
ROS_Cfam_1.01069,848,188 - 69,858,520 (-)NCBI
UMICH_Zoey_3.11069,565,521 - 69,575,854 (-)NCBI
UNSW_CanFamBas_1.01069,828,636 - 69,839,161 (-)NCBI
UU_Cfam_GSD_1.01070,127,516 - 70,137,844 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001239260   ⟸   NM_001252331
- UniProtKB: J9P061 (UniProtKB/TrEMBL),   A0A8C0QKN0 (UniProtKB/TrEMBL),   A0A8C0JK27 (UniProtKB/TrEMBL),   A0A8C0P176 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000065657   ⟸   ENSCAFT00000068815
Ensembl Acc Id: ENSCAFP00000050336   ⟸   ENSCAFT00000088181
Ensembl Acc Id: ENSCAFP00000038933   ⟸   ENSCAFT00000047988
Ensembl Acc Id: ENSCAFP00000046779   ⟸   ENSCAFT00000065475
Ensembl Acc Id: ENSCAFP00000044334   ⟸   ENSCAFT00000005389
Ensembl Acc Id: ENSCAFP00845038439   ⟸   ENSCAFT00845048997
Ensembl Acc Id: ENSCAFP00845038367   ⟸   ENSCAFT00845048910
Ensembl Acc Id: ENSCAFP00845038414   ⟸   ENSCAFT00845048968
Protein Domains
Sm

Promoters
RGD ID:13685109
Promoter ID:EPDNEW_C3179
Type:initiation region
Name:SNRPG_1
Description:small nuclear ribonucleoprotein polypeptide G
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11068,836,770 - 68,836,830EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000003361 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00000032595 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030020820 UniProtKB/TrEMBL
  ENSCAFG00030020921 UniProtKB/TrEMBL
  ENSCAFG00040007930 UniProtKB/TrEMBL
  ENSCAFG00040007983 UniProtKB/TrEMBL
  ENSCAFG00845027728 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000005389.2 UniProtKB/TrEMBL
  ENSCAFT00000047988.2 UniProtKB/TrEMBL
  ENSCAFT00000068815.2 UniProtKB/TrEMBL
  ENSCAFT00030038197.1 UniProtKB/TrEMBL
  ENSCAFT00030038390.1 UniProtKB/TrEMBL
  ENSCAFT00030038437.1 UniProtKB/TrEMBL
  ENSCAFT00030038483.1 UniProtKB/TrEMBL
  ENSCAFT00040014783.1 UniProtKB/TrEMBL
  ENSCAFT00040014813.1 UniProtKB/TrEMBL
  ENSCAFT00040014885.1 UniProtKB/TrEMBL
  ENSCAFT00845048910.1 UniProtKB/TrEMBL
  ENSCAFT00845048968 ENTREZGENE
  ENSCAFT00845048968.1 UniProtKB/TrEMBL
  ENSCAFT00845048997.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.30.100 UniProtKB/TrEMBL
InterPro IPR047575 UniProtKB/TrEMBL
  Lsm7/SmG-like UniProtKB/TrEMBL
  LSM_dom_euk/arc UniProtKB/TrEMBL
  LSM_dom_sf UniProtKB/TrEMBL
  Sm_G UniProtKB/TrEMBL
KEGG Report cfa:612653 UniProtKB/TrEMBL
NCBI Gene SNRPG ENTREZGENE
PANTHER PTHR10553 UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN G UniProtKB/TrEMBL
  SMALL NUCLEAR RIBONUCLEOPROTEIN G-RELATED UniProtKB/TrEMBL
Pfam LSM UniProtKB/TrEMBL
PIRSF U6_snRNA_Lsm7 UniProtKB/TrEMBL
PROSITE PS52002 UniProtKB/TrEMBL
SMART SM00651 UniProtKB/TrEMBL
Superfamily-SCOP SSF50182 UniProtKB/TrEMBL
UniProt A0A8C0JK27 ENTREZGENE
  A0A8C0NZT2_CANLF UniProtKB/TrEMBL
  A0A8C0P176 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0P5Q7_CANLF UniProtKB/TrEMBL
  A0A8C0QKN0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3PUG6_CANLF UniProtKB/TrEMBL
  A0A8I3PYE8_CANLF UniProtKB/TrEMBL
  J9P061 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54547 ENTREZGENE