Suclg2 (succinate-CoA ligase GDP-forming subunit beta) - Rat Genome Database

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Gene: Suclg2 (succinate-CoA ligase GDP-forming subunit beta) Rattus norvegicus
Analyze
Symbol: Suclg2
Name: succinate-CoA ligase GDP-forming subunit beta
RGD ID: 1305008
Description: Enables GDP binding activity and succinate-CoA ligase (GDP-forming) activity. Involved in succinate metabolic process; succinyl-CoA metabolic process; and tricarboxylic acid cycle. Part of succinate-CoA ligase complex (GDP-forming). Orthologous to human SUCLG2 (succinate-CoA ligase GDP-forming subunit beta); PARTICIPATES IN citric acid cycle pathway; fumaric aciduria pathway; mitochondrial complex II deficiency pathway; INTERACTS WITH (R)-adrenaline; 17beta-estradiol; 2,4-dinitrotoluene.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362404; succinate--CoA ligase [GDP-forming] subunit beta, mitochondrial; succinate-CoA ligase, GDP-forming beta subunit; succinate-CoA ligase, GDP-forming, beta subunit; succinate-Coenzyme A ligase, GDP-forming, beta subunit; succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84129,623,833 - 129,893,937 (-)NCBIGRCr8
mRatBN7.24128,067,031 - 128,337,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4128,067,033 - 128,337,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4133,537,045 - 133,796,153 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04129,311,467 - 129,570,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04127,936,011 - 128,195,129 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04127,552,100 - 127,824,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4127,552,101 - 127,824,970 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04192,061,200 - 192,333,899 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44129,995,856 - 130,276,182 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14130,240,697 - 130,521,016 (-)NCBI
Celera4116,961,947 - 117,231,527 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
(R)-adrenaline  (EXP)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
5-methyl-4-oxido-2-pyrazin-4-iumcarboxylic acid  (ISO)
7H-xanthine  (EXP)
9H-xanthine  (EXP)
acetamide  (EXP)
acrolein  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
alpha-hexachlorocyclohexane  (EXP)
alpha-pinene  (ISO)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
choline  (ISO)
chromium trinitrate  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
clofibric acid  (EXP)
cobalt dichloride  (ISO)
crocidolite asbestos  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diarsenic trioxide  (ISO)
dibutyl phthalate  (EXP,ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
folic acid  (ISO)
formaldehyde  (ISO)
fumonisin B1  (ISO)
gentamycin  (EXP)
glyphosate  (EXP)
inulin  (ISO)
ivermectin  (ISO)
L-ascorbic acid  (ISO)
L-methionine  (ISO)
methapyrilene  (EXP)
methotrexate  (ISO)
methyl methanesulfonate  (ISO)
microcystin-LR  (ISO)
N-nitrosodiethylamine  (EXP)
N-nitrosomorpholine  (EXP)
okadaic acid  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorododecanoic acid  (EXP)
perfluorooctane-1-sulfonic acid  (ISO)
phenethyl isothiocyanate  (ISO)
phenylmercury acetate  (ISO)
phlorizin  (ISO)
pirinixic acid  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
resveratrol  (ISO)
SB 431542  (ISO)
senecionine  (ISO)
sodium arsenite  (ISO)
sodium nitrate  (ISO)
sunitinib  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
testosterone  (ISO)
tetrachloromethane  (EXP,ISO)
thioacetamide  (EXP)
thiram  (ISO)
titanium dioxide  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Affinity chromatography and affinity labeling of rat liver succinyl-CoA synthetase. Ball DJ and Nishimura JS, J Biol Chem. 1980 Nov 25;255(22):10805-12.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Mitochondrial GTP regulates glucose-stimulated insulin secretion. Kibbey RG, etal., Cell Metab. 2007 Apr;5(4):253-64.
5. Localization and characterization of the mitochondrial isoform of the nucleoside diphosphate kinase in the pancreatic beta cell: evidence for its complexation with mitochondrial succinyl-CoA synthetase. Kowluru A, etal., Arch Biochem Biophys. 2002 Feb 15;398(2):160-9.
6. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
7. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
8. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
9. GOA pipeline RGD automated data pipeline
10. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
11. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
12. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14651853   PMID:18614015  


Genomics

Comparative Map Data
Suclg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84129,623,833 - 129,893,937 (-)NCBIGRCr8
mRatBN7.24128,067,031 - 128,337,146 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4128,067,033 - 128,337,170 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4133,537,045 - 133,796,153 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04129,311,467 - 129,570,570 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04127,936,011 - 128,195,129 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04127,552,100 - 127,824,970 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4127,552,101 - 127,824,970 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04192,061,200 - 192,333,899 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44129,995,856 - 130,276,182 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14130,240,697 - 130,521,016 (-)NCBI
Celera4116,961,947 - 117,231,527 (-)NCBICelera
Cytogenetic Map4q34NCBI
SUCLG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38367,360,460 - 67,654,612 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl367,360,460 - 67,654,612 (-)EnsemblGRCh38hg38GRCh38
GRCh37367,410,884 - 67,705,036 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36367,507,833 - 67,787,728 (-)NCBINCBI36Build 36hg18NCBI36
Build 34367,507,835 - 67,787,698NCBI
Celera367,353,993 - 67,645,444 (-)NCBICelera
Cytogenetic Map3p14.1NCBI
HuRef367,427,311 - 67,718,351 (-)NCBIHuRef
CHM1_1367,362,353 - 67,656,266 (-)NCBICHM1_1
T2T-CHM13v2.0367,405,452 - 67,699,926 (-)NCBIT2T-CHM13v2.0
Suclg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39695,449,992 - 95,695,799 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl695,449,990 - 95,695,781 (-)EnsemblGRCm39 Ensembl
GRCm38695,473,009 - 95,718,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl695,473,009 - 95,718,800 (-)EnsemblGRCm38mm10GRCm38
MGSCv37695,424,128 - 95,668,831 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36695,439,609 - 95,684,251 (-)NCBIMGSCv36mm8
Celera697,363,804 - 97,602,843 (-)NCBICelera
Cytogenetic Map6D2NCBI
cM Map644.63NCBI
Suclg2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542120,089,237 - 20,350,843 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542120,089,471 - 20,350,334 (+)NCBIChiLan1.0ChiLan1.0
SUCLG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2267,297,278 - 67,583,115 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1367,302,066 - 67,587,910 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0367,277,348 - 67,563,181 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1368,646,711 - 68,931,961 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl368,647,738 - 68,931,891 (-)Ensemblpanpan1.1panPan2
SUCLG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12023,915,149 - 24,167,740 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2023,895,802 - 24,182,869 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2023,886,104 - 24,138,714 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02023,942,402 - 24,194,878 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2023,923,303 - 24,210,054 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12023,639,932 - 23,892,783 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02023,985,458 - 24,238,734 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02024,045,666 - 24,298,090 (+)NCBIUU_Cfam_GSD_1.0
Suclg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404942243,107 - 378,528 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936603243,113 - 378,528 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936603243,113 - 378,526 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SUCLG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1348,823,733 - 49,090,468 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11348,650,851 - 49,090,521 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21353,872,520 - 54,030,696 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SUCLG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12228,382,612 - 28,677,749 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2228,381,787 - 28,677,742 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041138,141,609 - 138,419,603 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Suclg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247731,818,374 - 2,087,331 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247731,816,924 - 2,087,384 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Suclg2
1605 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:519
Count of miRNA genes:234
Interacting mature miRNAs:280
Transcripts:ENSRNOT00000068274
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat

Markers in Region
D4Mit16  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24128,289,450 - 128,289,560 (+)MAPPERmRatBN7.2
Rnor_6.04127,777,294 - 127,777,403NCBIRnor6.0
Rnor_5.04192,286,223 - 192,286,332UniSTSRnor5.0
RGSC_v3.44130,228,505 - 130,228,614UniSTSRGSC3.4
RGSC_v3.44130,228,504 - 130,228,614RGDRGSC3.4
RGSC_v3.14130,473,346 - 130,473,455RGD
Celera4117,183,835 - 117,183,944UniSTS
RH 3.4 Map4773.8RGD
RH 3.4 Map4773.8UniSTS
RH 2.0 Map4857.2RGD
SHRSP x BN Map456.66RGD
FHH x ACI Map475.85RGD
Cytogenetic Map4q34UniSTS
RH142916  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24128,335,667 - 128,335,933 (+)MAPPERmRatBN7.2
Rnor_6.04127,823,492 - 127,823,757NCBIRnor6.0
Rnor_5.04192,332,421 - 192,332,686UniSTSRnor5.0
RGSC_v3.44130,274,704 - 130,274,969UniSTSRGSC3.4
Celera4117,230,049 - 117,230,314UniSTS
RH 3.4 Map4775.8UniSTS
Cytogenetic Map4q34UniSTS
RH136847  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24128,067,126 - 128,067,307 (+)MAPPERmRatBN7.2
Rnor_6.04127,552,196 - 127,552,376NCBIRnor6.0
Rnor_5.04192,061,296 - 192,061,476UniSTSRnor5.0
RGSC_v3.44129,995,952 - 129,996,132UniSTSRGSC3.4
Celera4116,962,043 - 116,962,223UniSTS
RH 3.4 Map4770.5UniSTS
Cytogenetic Map4q34UniSTS
AA850481  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24128,067,126 - 128,067,277 (+)MAPPERmRatBN7.2
Rnor_6.04127,552,196 - 127,552,346NCBIRnor6.0
Rnor_5.04192,061,296 - 192,061,446UniSTSRnor5.0
RGSC_v3.44129,995,952 - 129,996,102UniSTSRGSC3.4
Celera4116,962,043 - 116,962,193UniSTS
RH 3.4 Map4768.6UniSTS
Cytogenetic Map4q34UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000068274   ⟹   ENSRNOP00000060990
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4128,067,033 - 128,337,165 (-)Ensembl
Rnor_6.0 Ensembl4127,552,101 - 127,824,970 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096122   ⟹   ENSRNOP00000092654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4128,093,089 - 128,337,170 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113931   ⟹   ENSRNOP00000082540
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4128,088,138 - 128,337,170 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000116675   ⟹   ENSRNOP00000092604
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4128,091,181 - 128,337,170 (-)Ensembl
RefSeq Acc Id: NM_001100750   ⟹   NP_001094220
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84129,623,833 - 129,893,937 (-)NCBI
mRatBN7.24128,067,031 - 128,337,146 (-)NCBI
Rnor_6.04127,552,100 - 127,824,970 (-)NCBI
Rnor_5.04192,061,200 - 192,333,899 (-)NCBI
RGSC_v3.44129,995,856 - 130,276,182 (-)RGD
Celera4116,961,947 - 117,231,527 (-)RGD
Sequence:
RefSeq Acc Id: NP_001094220   ⟸   NM_001100750
- UniProtKB: B1H270 (UniProtKB/TrEMBL),   Q68FT4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000060990   ⟸   ENSRNOT00000068274
Ensembl Acc Id: ENSRNOP00000092654   ⟸   ENSRNOT00000096122
Ensembl Acc Id: ENSRNOP00000092604   ⟸   ENSRNOT00000116675
Ensembl Acc Id: ENSRNOP00000082540   ⟸   ENSRNOT00000113931
Protein Domains
ATP-grasp

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LPV8-F1-model_v2 AlphaFold F1LPV8 1-431 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693263
Promoter ID:EPDNEW_R3788
Type:multiple initiation site
Name:Suclg2_1
Description:succinate-CoA ligase, GDP-forming, beta subunit
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04127,824,982 - 127,825,042EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1305008 AgrOrtholog
BioCyc Gene G2FUF-43626 BioCyc
Ensembl Genes ENSRNOG00000005686 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000068274.3 UniProtKB/TrEMBL
  ENSRNOT00000096122.1 UniProtKB/TrEMBL
  ENSRNOT00000113931.1 UniProtKB/TrEMBL
  ENSRNOT00000116675.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.1490.20 UniProtKB/TrEMBL
  3.40.50.261 UniProtKB/TrEMBL
  ATP-grasp fold, B domain UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5598387 IMAGE-MGC_LOAD
  IMAGE:7109535 IMAGE-MGC_LOAD
  IMAGE:7127932 IMAGE-MGC_LOAD
  IMAGE:7385389 IMAGE-MGC_LOAD
InterPro ATP-grasp UniProtKB/TrEMBL
  ATP-grasp_succ-CoA_synth-type UniProtKB/TrEMBL
  ATP_grasp_subdomain_1 UniProtKB/TrEMBL
  CoA_ligase UniProtKB/TrEMBL
  Succ-CoA_synthase_bsu_CS UniProtKB/TrEMBL
  Succ_CoA_betaG_euk UniProtKB/TrEMBL
  Succ_CoA_synthase_bsu UniProtKB/TrEMBL
  Succinyl-CoA_synth-like UniProtKB/TrEMBL
KEGG Report rno:362404 UniProtKB/TrEMBL
MGC_CLONE MGC:108961 IMAGE-MGC_LOAD
  MGC:124752 IMAGE-MGC_LOAD
  MGC:188299 IMAGE-MGC_LOAD
  MGC:94850 IMAGE-MGC_LOAD
NCBI Gene 362404 ENTREZGENE
PANTHER CoA_lig_beta UniProtKB/TrEMBL
  SUCCINATE--COA LIGASE [GDP-FORMING] SUBUNIT BETA, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam ATP-grasp_2 UniProtKB/TrEMBL
  Ligase_CoA UniProtKB/TrEMBL
PhenoGen Suclg2 PhenoGen
PIRSF SucCS_beta UniProtKB/TrEMBL
PROSITE ATP_GRASP UniProtKB/TrEMBL
  SUCCINYL_COA_LIG_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000005686 RatGTEx
Superfamily-SCOP CoA_ligase UniProtKB/TrEMBL
  Glutathione synthetase ATP-binding domain-like UniProtKB/TrEMBL
UniProt A0A8I5ZV34_RAT UniProtKB/TrEMBL
  A0A8I6AHY6_RAT UniProtKB/TrEMBL
  A0A8I6AIH6_RAT UniProtKB/TrEMBL
  B1H270 ENTREZGENE, UniProtKB/TrEMBL
  F1LPV8_RAT UniProtKB/TrEMBL
  Q499V7_RAT UniProtKB/TrEMBL
  Q5EBA9_RAT UniProtKB/TrEMBL
  Q68FT4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-12-06 Suclg2  succinate-CoA ligase GDP-forming subunit beta  Suclg2  succinate-CoA ligase, GDP-forming, beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Suclg2  succinate-CoA ligase, GDP-forming, beta subunit  Suclg2  succinate-Coenzyme A ligase, GDP-forming, beta subunit  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 Suclg2  succinate-Coenzyme A ligase, GDP-forming, beta subunit  Suclg2_predicted  succinate-Coenzyme A ligase, GDP-forming, beta subunit (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Suclg2_predicted  succinate-Coenzyme A ligase, GDP-forming, beta subunit (predicted)      Symbol and Name status set to approved 70820 APPROVED