Anxa4 (annexin A4) - Rat Genome Database

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Gene: Anxa4 (annexin A4) Rattus norvegicus
Analyze
Symbol: Anxa4
Name: annexin A4
RGD ID: 621171
Description: Predicted to enable several functions, including NF-kappaB binding activity; calcium-dependent protein binding activity; and phospholipid binding activity. Predicted to be involved in epithelial cell differentiation; negative regulation of interleukin-8 production; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within Notch signaling pathway. Predicted to be located in several cellular components, including cell surface; nuclear membrane; and perinuclear region of cytoplasm. Predicted to be active in cytoplasm and plasma membrane. Orthologous to human ANXA4 (annexin A4); INTERACTS WITH 1-naphthyl isothiocyanate; 17alpha-ethynylestradiol; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 36 kDa zymogen granule membrane-associated protein; annexin IV; annexin-4; Anx4; lipocortin IV; MGC93088; ZAP 36/annexin IV; ZAP36
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,741,750 - 120,798,534 (-)NCBIGRCr8
mRatBN7.24119,184,378 - 119,241,183 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,184,374 - 119,241,161 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,657,022 - 124,714,488 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,431,755 - 120,489,223 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,056,020 - 119,113,477 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,538,775 - 118,595,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,538,777 - 118,595,580 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,108,900 - 183,164,913 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,889,617 - 120,947,662 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,134,099 - 121,192,143 (-)NCBI
Celera4108,154,463 - 108,210,569 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-17-methylestra-4,9,11-trien-3-one  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (ISO)
3-chloropropane-1,2-diol  (EXP)
3H-1,2-dithiole-3-thione  (EXP)
4,4'-diaminodiphenylmethane  (EXP,ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amiodarone  (ISO)
ammonium chloride  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
Aroclor 1254  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
benzoates  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bleomycin A2  (EXP)
butanal  (ISO)
butyric acid  (ISO)
cadmium dichloride  (EXP)
caffeine  (ISO)
camptothecin  (ISO)
carbamazepine  (ISO)
carboplatin  (ISO)
chlorpyrifos  (ISO)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
D-penicillamine  (EXP)
daunorubicin  (ISO)
dexamethasone  (ISO)
dextran sulfate  (ISO)
dichlorine  (EXP)
dicrotophos  (ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
enzalutamide  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
etoposide  (ISO)
flavonoids  (EXP)
fluorescein 5-isothiocyanate  (ISO)
flutamide  (EXP)
folic acid  (EXP,ISO)
formaldehyde  (ISO)
furan  (EXP)
gentamycin  (EXP)
glafenine  (EXP)
glyphosate  (EXP)
hyaluronic acid  (EXP)
hydrogen peroxide  (EXP,ISO)
ivermectin  (ISO)
ketamine  (EXP)
L-methionine  (EXP)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
lithocholic acid  (ISO)
lovastatin  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
methylparaben  (ISO)
microcystin-LR  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (EXP)
N-nitrosomorpholine  (EXP)
nickel atom  (ISO)
niclosamide  (ISO)
nimesulide  (EXP)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (EXP)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (EXP,ISO)
perfluorooctanoic acid  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
phenytoin  (ISO)
platinum  (ISO)
platinum(0)  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
prostaglandin F2alpha  (EXP)
quercetin  (ISO)
resveratrol  (ISO)
rotenone  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
Soman  (EXP)
temozolomide  (ISO)
tert-butyl hydroperoxide  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (EXP)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
tributylstannane  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triptonide  (ISO)
tunicamycin  (ISO)
urethane  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)
vorinostat  (ISO)
warfarin  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Cloning and characterization of ZAP36, an annexin-like, zymogen granule membrane associated protein, in exocrine pancreas. Fukuoka S, etal., Biochim Biophys Acta 2002 May 3;1575(1-3):148-52.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2138016   PMID:12477932   PMID:14960300   PMID:15226301   PMID:16687573   PMID:19056867   PMID:19199708   PMID:19809188   PMID:20237821   PMID:20458337   PMID:21492153   PMID:22056994  
PMID:23376485   PMID:23533145   PMID:25446530   PMID:25649809   PMID:30673304  


Genomics

Comparative Map Data
Anxa4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84120,741,750 - 120,798,534 (-)NCBIGRCr8
mRatBN7.24119,184,378 - 119,241,183 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4119,184,374 - 119,241,161 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4124,657,022 - 124,714,488 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04120,431,755 - 120,489,223 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04119,056,020 - 119,113,477 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04118,538,775 - 118,595,591 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4118,538,777 - 118,595,580 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04183,108,900 - 183,164,913 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44120,889,617 - 120,947,662 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14121,134,099 - 121,192,143 (-)NCBI
Celera4108,154,463 - 108,210,569 (-)NCBICelera
Cytogenetic Map4q34NCBI
ANXA4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38269,643,808 - 69,827,112 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl269,644,425 - 69,827,112 (+)EnsemblGRCh38hg38GRCh38
GRCh37269,870,940 - 70,054,244 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36269,862,156 - 69,907,095 (+)NCBINCBI36Build 36hg18NCBI36
Build 34269,880,931 - 69,965,242NCBI
Celera269,820,355 - 69,904,776 (+)NCBICelera
Cytogenetic Map2p13.3NCBI
HuRef269,705,143 - 69,789,596 (+)NCBIHuRef
CHM1_1269,898,797 - 69,983,225 (+)NCBICHM1_1
T2T-CHM13v2.0269,656,119 - 69,839,380 (+)NCBIT2T-CHM13v2.0
Anxa4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39686,713,822 - 86,770,616 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl686,713,822 - 86,770,566 (-)EnsemblGRCm39 Ensembl
GRCm38686,736,840 - 86,793,634 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl686,736,840 - 86,793,584 (-)EnsemblGRCm38mm10GRCm38
MGSCv37686,686,834 - 86,743,578 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36686,702,481 - 86,759,190 (-)NCBIMGSCv36mm8
Celera688,676,474 - 88,732,953 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map637.75NCBI
Anxa4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542415,321,990 - 15,389,136 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542415,323,604 - 15,389,136 (-)NCBIChiLan1.0ChiLan1.0
ANXA4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21256,584,356 - 56,770,098 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A56,585,188 - 56,774,043 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A69,686,651 - 69,869,340 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A70,804,600 - 70,986,917 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A70,902,260 - 70,986,917 (+)Ensemblpanpan1.1panPan2
ANXA4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11068,418,678 - 68,466,181 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1068,431,056 - 68,466,174 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1068,322,864 - 68,356,727 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01069,440,630 - 69,488,848 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1069,440,673 - 69,488,845 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11069,173,313 - 69,207,038 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01069,436,246 - 69,470,031 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01069,733,550 - 69,767,485 (+)NCBIUU_Cfam_GSD_1.0
Anxa4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629214,523,602 - 14,588,420 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649113,982,677 - 14,047,690 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649113,982,926 - 14,047,690 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ANXA4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl372,622,358 - 72,694,212 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1372,623,311 - 72,654,591 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2376,061,048 - 76,092,442 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ANXA4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11437,297,960 - 37,384,187 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1437,297,652 - 37,344,884 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604574,614,745 - 74,700,151 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Anxa4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247623,562,446 - 3,641,770 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247623,562,656 - 3,641,465 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Anxa4
257 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:522
Count of miRNA genes:242
Interacting mature miRNAs:296
Transcripts:ENSRNOT00000024436
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
2306899Bp338Blood pressure QTL 3380.071arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)481006124120102625Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat

Markers in Region
RH134069  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,184,546 - 119,184,726 (+)MAPPERmRatBN7.2
Rnor_6.04118,538,944 - 118,539,123NCBIRnor6.0
Rnor_5.04183,109,073 - 183,109,252UniSTSRnor5.0
RGSC_v3.44120,889,786 - 120,889,965UniSTSRGSC3.4
Celera4108,154,632 - 108,154,811UniSTS
RH 3.4 Map4694.8UniSTS
Cytogenetic Map4q34UniSTS
AU048940  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24119,228,457 - 119,228,605 (+)MAPPERmRatBN7.2
Rnor_6.04118,582,895 - 118,583,040NCBIRnor6.0
Rnor_5.04183,151,981 - 183,152,126UniSTSRnor5.0
RGSC_v3.44120,934,977 - 120,935,122UniSTSRGSC3.4
Celera4108,197,883 - 108,198,028UniSTS
Cytogenetic Map4q34UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 31 47 31 19 31 8 11 19 35 28 11 8
Low 12 10 10 10 55 13
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000024436   ⟹   ENSRNOP00000024436
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,184,374 - 119,241,161 (-)Ensembl
Rnor_6.0 Ensembl4118,538,777 - 118,595,580 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000080502   ⟹   ENSRNOP00000073016
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,185,039 - 119,241,068 (-)Ensembl
Rnor_6.0 Ensembl4118,539,560 - 118,578,815 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000101594   ⟹   ENSRNOP00000080036
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4119,184,407 - 119,212,126 (-)Ensembl
RefSeq Acc Id: NM_024155   ⟹   NP_077069
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,741,754 - 120,798,513 (-)NCBI
mRatBN7.24119,184,378 - 119,241,153 (-)NCBI
Rnor_6.04118,538,775 - 118,595,580 (-)NCBI
Rnor_5.04183,108,900 - 183,164,913 (-)NCBI
RGSC_v3.44120,889,617 - 120,947,662 (-)RGD
Celera4108,154,463 - 108,210,569 (-)RGD
Sequence:
RefSeq Acc Id: XM_006236841   ⟹   XP_006236903
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,741,750 - 120,798,534 (-)NCBI
mRatBN7.24119,184,390 - 119,241,183 (-)NCBI
Rnor_6.04118,539,428 - 118,595,591 (-)NCBI
Rnor_5.04183,108,900 - 183,164,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039108396   ⟹   XP_038964324
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,741,750 - 120,780,104 (-)NCBI
mRatBN7.24119,184,390 - 119,222,638 (-)NCBI
RefSeq Acc Id: XM_039108397   ⟹   XP_038964325
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,741,750 - 120,798,479 (-)NCBI
mRatBN7.24119,184,390 - 119,240,597 (-)NCBI
RefSeq Acc Id: XM_039108398   ⟹   XP_038964326
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,741,750 - 120,794,051 (-)NCBI
mRatBN7.24119,184,390 - 119,236,631 (-)NCBI
RefSeq Acc Id: XM_063286727   ⟹   XP_063142797
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84120,741,750 - 120,798,519 (-)NCBI
RefSeq Acc Id: NP_077069   ⟸   NM_024155
- UniProtKB: P55260 (UniProtKB/Swiss-Prot),   Q5U362 (UniProtKB/TrEMBL),   A6IAZ2 (UniProtKB/TrEMBL),   F7ERI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236903   ⟸   XM_006236841
- Peptide Label: isoform X1
- UniProtKB: P55260 (UniProtKB/Swiss-Prot),   Q5U362 (UniProtKB/TrEMBL),   A6IAZ2 (UniProtKB/TrEMBL),   F7ERI2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000073016   ⟸   ENSRNOT00000080502
RefSeq Acc Id: ENSRNOP00000024436   ⟸   ENSRNOT00000024436
RefSeq Acc Id: XP_038964325   ⟸   XM_039108397
- Peptide Label: isoform X1
- UniProtKB: P55260 (UniProtKB/Swiss-Prot),   Q5U362 (UniProtKB/TrEMBL),   A6IAZ2 (UniProtKB/TrEMBL),   F7ERI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964326   ⟸   XM_039108398
- Peptide Label: isoform X1
- UniProtKB: P55260 (UniProtKB/Swiss-Prot),   Q5U362 (UniProtKB/TrEMBL),   A6IAZ2 (UniProtKB/TrEMBL),   F7ERI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964324   ⟸   XM_039108396
- Peptide Label: isoform X1
- UniProtKB: P55260 (UniProtKB/Swiss-Prot),   Q5U362 (UniProtKB/TrEMBL),   A6IAZ2 (UniProtKB/TrEMBL),   F7ERI2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000080036   ⟸   ENSRNOT00000101594
RefSeq Acc Id: XP_063142797   ⟸   XM_063286727
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P55260-F1-model_v2 AlphaFold P55260 1-319 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693214
Promoter ID:EPDNEW_R3739
Type:initiation region
Name:Anxa4_1
Description:annexin A4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04118,595,561 - 118,595,621EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621171 AgrOrtholog
BioCyc Gene G2FUF-43883 BioCyc
Ensembl Genes ENSRNOG00000018159 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024436.8 UniProtKB/TrEMBL
  ENSRNOT00000080502.2 UniProtKB/TrEMBL
  ENSRNOT00000101594.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.220.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7191458 IMAGE-MGC_LOAD
InterPro Annexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Annexin_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Annexin_repeat_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Annexin_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANX4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:79124 UniProtKB/TrEMBL
MGC_CLONE MGC:93088 IMAGE-MGC_LOAD
NCBI Gene 79124 ENTREZGENE
PANTHER ANNEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10502:SF28 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Annexin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Anxa4 PhenoGen
PRINTS ANNEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANNEXINIV UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE ANNEXIN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANNEXIN_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000018159 RatGTEx
SMART ANX UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF47874 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0G2K4E9_RAT UniProtKB/TrEMBL
  A0A8I5ZNY4_RAT UniProtKB/TrEMBL
  A6IAZ2 ENTREZGENE, UniProtKB/TrEMBL
  A6IAZ3_RAT UniProtKB/TrEMBL
  A6IAZ4_RAT UniProtKB/TrEMBL
  ANXA4_RAT UniProtKB/Swiss-Prot
  F7ERI2 ENTREZGENE, UniProtKB/TrEMBL
  P55260 ENTREZGENE
  Q5U362 ENTREZGENE
UniProt Secondary Q5U362 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-10 Anxa4  annexin A4    ZAP 36/annexin IV  Name updated 1299863 APPROVED
2002-08-07 Anxa4  ZAP 36/annexin IV      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_function calcium/phospholipid-binding protein which promotes membrane fusion and is involved in exocytosis 724707