H1f10 (H1.10 linker histone) - Rat Genome Database

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Gene: H1f10 (H1.10 linker histone) Rattus norvegicus
Analyze
Symbol: H1f10
Name: H1.10 linker histone
RGD ID: 1565596
Description: Predicted to enable double-stranded DNA binding activity and nucleosomal DNA binding activity. Predicted to be involved in chromosome condensation and negative regulation of DNA recombination. Predicted to be located in chromosome; nucleolus; and nucleoplasm. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H1-10 (H1.10 linker histone); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: H1 histone family, member X; H1fx; histone H1.10; histone H1x; LOC500252; RGD1565596; similar to Gene model 461
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,997,834 - 121,998,897 (-)NCBIGRCr8
mRatBN7.24120,440,515 - 120,441,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,440,870 - 120,441,448 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,912,998 - 125,914,061 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,687,780 - 121,688,843 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,312,024 - 120,313,087 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,889,016 - 119,892,661 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,889,371 - 119,889,949 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,136,727 - 185,140,194 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,179,764 - 122,180,823 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,399,957 - 109,403,602 (-)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
H1f10RatCOVID-19  ISOH1-10 (Homo sapiens)9068941mRNA:increased expression:peripheral blood mononuclear cell (human)RGDPMID:32228226 and REF_RGD_ID:28912744
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
H1f10Ratalkaptonuria  ISOH1-10 (Homo sapiens)8554872ClinVar Annotator: match by term: AlkaptonuriaClinVarPMID:12501223 more ...
H1f10Ratimmunodeficiency 21  ISOH1-10 (Homo sapiens)8554872ClinVar Annotator: match by term: GATA2 DEFICIENCYClinVarPMID:28492532
H1f10RatPrimary Lymphedema with Myelodysplasia  ISOH1-10 (Homo sapiens)8554872ClinVar Annotator: match by term: Emberger syndromeClinVarPMID:19449416 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
H1f10RatAnimal Disease Models  ISOH1f10 (Mus musculus)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27602772
H1f10Ratlung adenocarcinoma  ISOH1f10 (Mus musculus)11554173CTD Direct Evidence: marker/mechanismCTDPMID:27602772

1 to 20 of 97 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
H1f10Rat17beta-estradiol increases expressionEXP 6480464Estradiol results in increased expression of H1F10 mRNACTDPMID:32145629
H1f10Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOH1f10 (Mus musculus)6480464Tetrachlorodibenzodioxin affects the expression of H1F10 mRNACTDPMID:21570461
H1f10Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionEXP 6480464Tetrachlorodibenzodioxin results in decreased expression of H1F10 mRNACTDPMID:33387578
H1f10Rat2-hydroxypropanoic acid increases expressionISOH1-10 (Homo sapiens)6480464Lactic Acid results in increased expression of H1-10 mRNACTDPMID:30851411
H1f10Rat3,4-methylenedioxymethamphetamine increases expressionISOH1f10 (Mus musculus)6480464N-Methyl-3 and 4-methylenedioxyamphetamine results in increased expression of H1F10 mRNACTDPMID:20188158
H1f10Rat6-propyl-2-thiouracil increases expressionEXP 6480464Propylthiouracil results in increased expression of H1F10 mRNACTDPMID:24780913
H1f10Ratacrylamide decreases expressionISOH1-10 (Homo sapiens)6480464Acrylamide results in decreased expression of H1-10 mRNACTDPMID:32763439
H1f10Ratactinomycin D multiple interactionsISOH1-10 (Homo sapiens)6480464[Dactinomycin co-treated with nutlin 3] results in increased secretion of H1-10 proteinCTDPMID:38460933
H1f10Ratall-trans-retinoic acid increases expressionISOH1-10 (Homo sapiens)6480464Tretinoin results in increased expression of H1-10 mRNACTDPMID:16054129
H1f10Rataristolochic acid A decreases expressionISOH1-10 (Homo sapiens)6480464aristolochic acid I results in decreased expression of H1-10 proteinCTDPMID:33212167
H1f10Ratarsane multiple interactionsISOH1-10 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of H1-10 mRNACTDPMID:39836092
H1f10Ratarsenic atom multiple interactionsISOH1-10 (Homo sapiens)6480464[sodium arsenite results in increased abundance of Arsenic] which results in decreased expression of H1-10 mRNACTDPMID:39836092
H1f10Ratatrazine increases expressionISOH1-10 (Homo sapiens)6480464Atrazine results in increased expression of H1-10 mRNACTDPMID:22378314
H1f10Ratatrazine increases expressionEXP 6480464Atrazine results in increased expression of H1F10 mRNACTDPMID:36841081
H1f10Ratbelinostat increases expressionISOH1-10 (Homo sapiens)6480464belinostat results in increased expression of H1-10 mRNACTDPMID:19606018
H1f10Ratbenzo[a]pyrene decreases expressionISOH1f10 (Mus musculus)6480464Benzo(a)pyrene results in decreased expression of H1F10 mRNACTDPMID:22228805 and PMID:27195522
H1f10Ratbenzo[a]pyrene diol epoxide I decreases expressionISOH1-10 (Homo sapiens)64804647 more ...CTDPMID:20018196
H1f10Ratbisphenol A decreases expressionISOH1-10 (Homo sapiens)6480464bisphenol A results in decreased expression of H1-10 mRNACTDPMID:16029874
H1f10Ratbisphenol A decreases expressionISOH1f10 (Mus musculus)6480464bisphenol A results in decreased expression of H1F10 mRNACTDPMID:35598803
H1f10Ratbisphenol A increases expressionISOH1-10 (Homo sapiens)6480464bisphenol A results in increased expression of H1-10 proteinCTDPMID:37567409 and PMID:37664457

1 to 20 of 97 rows

Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
H1f10Ratchromosome condensation involved_inIBAPANTHER:PTN000157378 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
H1f10Ratnegative regulation of DNA recombination involved_inIBAPANTHER:PTN000157378 and SGD:S0000060481600115GO_REF:0000033GO_CentralGO_REF:0000033
H1f10Ratnucleosome assembly involved_inIEAInterPro:IPR005818 and InterPro:IPR0058191600115GO_REF:0000002InterProGO_REF:0000002

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
H1f10Ratchromosome located_inISOH1-10 (Homo sapiens)1624291 RGDGO_REF:0000052
H1f10Ratchromosome located_inIEAUniProtKB-KW:KW-01581600115GO_REF:0000043UniProtGO_REF:0000043
H1f10Ratnucleolus located_inISOH1-10 (Homo sapiens)1624291 RGDGO_REF:0000052
H1f10Ratnucleoplasm located_inISOH1-10 (Homo sapiens)1624291 RGDGO_REF:0000052
H1f10Ratnucleosome part_ofIEAInterPro:IPR005818 and InterPro:IPR0058191600115GO_REF:0000002InterProGO_REF:0000002
H1f10Ratnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
H1f10Ratnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
H1f10Ratnucleus is_active_inIBAMGI:1888530 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
H1f10RatDNA binding enablesIEAInterPro:IPR005818 and InterPro:IPR0058191600115GO_REF:0000002InterProGO_REF:0000002
H1f10RatDNA binding enablesIEAUniProtKB-KW:KW-02381600115GO_REF:0000043UniProtGO_REF:0000043
H1f10Ratdouble-stranded DNA binding enablesIBAMGI:1888530 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
H1f10Ratnucleosomal DNA binding enablesIBAMGI:2176207 more ...1600115GO_REF:0000033GO_CentralGO_REF:0000033
H1f10Ratprotein binding enablesISOH1f10 (Mus musculus)1624291PR:Q91YK2 PMID:19710015RGDPMID:19710015
H1f10Ratstructural constituent of chromatin enablesIEAInterPro:IPR0058191600115GO_REF:0000002InterProGO_REF:0000002


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:22681889   PMID:24625528   PMID:25468996  



H1f10
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84121,997,834 - 121,998,897 (-)NCBIGRCr8
mRatBN7.24120,440,515 - 120,441,578 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,440,870 - 120,441,448 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4125,912,998 - 125,914,061 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04121,687,780 - 121,688,843 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,312,024 - 120,313,087 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04119,889,016 - 119,892,661 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,889,371 - 119,889,949 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,136,727 - 185,140,194 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,179,764 - 122,180,823 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4109,399,957 - 109,403,602 (-)NCBICelera
Cytogenetic Map4q34NCBI
H1-10
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383129,314,771 - 129,316,286 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3129,314,771 - 129,316,286 (-)EnsemblGRCh38hg38GRCh38
GRCh373129,033,614 - 129,035,129 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363130,516,305 - 130,517,807 (-)NCBINCBI36Build 36hg18NCBI36
Build 343130,516,312 - 130,517,815NCBI
Celera3127,464,821 - 127,466,328 (-)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3126,418,569 - 126,420,075 (-)NCBIHuRef
CHM1_13128,996,883 - 128,998,389 (-)NCBICHM1_1
T2T-CHM13v2.03132,059,569 - 132,061,084 (-)NCBIT2T-CHM13v2.0
H1f10
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39687,957,403 - 87,958,464 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl687,957,403 - 87,958,619 (-)EnsemblGRCm39 Ensembl
GRCm38687,980,421 - 87,981,482 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl687,980,421 - 87,981,637 (-)EnsemblGRCm38mm10GRCm38
MGSCv37687,930,415 - 87,931,476 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36687,946,062 - 87,947,123 (-)NCBIMGSCv36mm8
Celera689,917,433 - 89,918,305 (-)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.13NCBI
LOC102012785
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542913,672,008 - 13,672,613 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542913,671,907 - 13,673,689 (-)NCBIChiLan1.0ChiLan1.0
LOC117979756
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22127,250,568 - 127,252,492 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan13127,255,292 - 127,257,013 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03126,375,743 - 126,377,467 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
H1-10
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,799,360 - 2,800,524 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,836,267 - 2,837,436 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0202,819,935 - 2,821,104 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl202,820,032 - 2,820,673 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1202,539,851 - 2,541,018 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0202,866,027 - 2,867,191 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0202,827,241 - 2,828,409 (+)NCBIUU_Cfam_GSD_1.0
H1-10
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1371,760,467 - 71,761,839 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11371,760,464 - 71,762,035 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21379,433,152 - 79,434,216 (-)NCBISscrofa10.2Sscrofa10.2susScr3
H1FX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12251,749,560 - 51,751,081 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2251,749,948 - 51,750,586 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041114,652,521 - 114,654,797 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

.

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Variants in H1f10
5 total Variants

Predicted Target Of
Summary Value
Count of predictions:109
Count of miRNA genes:81
Interacting mature miRNAs:87
Transcripts:ENSRNOT00000033687
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat

1 to 10 of 49 rows



alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 10 49 113 90 89 58 25 58 6 216 97 93 45 60 31



Ensembl Acc Id: ENSRNOT00000033687   ⟹   ENSRNOP00000032882
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4120,440,870 - 120,441,448 (-)Ensembl
Rnor_6.0 Ensembl4119,889,371 - 119,889,949 (-)Ensembl
RefSeq Acc Id: NM_001399079   ⟹   NP_001386008
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84121,997,834 - 121,998,897 (-)NCBI
mRatBN7.24120,440,515 - 120,441,578 (-)NCBI
Protein RefSeqs NP_001386008 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL91300 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000032882.1
Ensembl Acc Id: ENSRNOP00000032882   ⟸   ENSRNOT00000033687
RefSeq Acc Id: NP_001386008   ⟸   NM_001399079
- UniProtKB: D3ZIX4 (UniProtKB/TrEMBL)
H15

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZIX4-F1-model_v2 AlphaFold D3ZIX4 1-192 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen



1 to 17 of 17 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-43838 BioCyc
Ensembl Genes ENSRNOG00000027722 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033687.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Histone_H1/H5 UniProtKB/TrEMBL
  Histone_H5 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene 500252 ENTREZGENE
Pfam Linker_histone UniProtKB/TrEMBL
PhenoGen H1f10 PhenoGen
PRINTS HISTONEH5 UniProtKB/TrEMBL
PROSITE H15 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000027722 RatGTEx
SMART H15 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt D3ZIX4 ENTREZGENE, UniProtKB/TrEMBL
1 to 17 of 17 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-08-06 H1f10  H1.10 linker histone  H1fx  H1 histone family, member X  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 H1fx  H1 histone family, member X  RGD1565596_predicted  similar to Gene model 461 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1565596_predicted  similar to Gene model 461 (predicted)  LOC500252  similar to Gene model 461  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500252  similar to Gene model 461      Symbol and Name status set to provisional 70820 PROVISIONAL