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Gene: Fbxo41 (F-box protein 41) Rattus norvegicus

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Symbol:

Fbxo41

Name:

F-box protein 41

RGD ID:

1566130

Description:

Predicted to act upstream of or within chemical synaptic transmission; gene expression; and nervous system development. Predicted to be located in synapse. Orthologous to human FBXO41 (F-box protein 41); INTERACTS WITH 17alpha-ethynylestradiol; bisphenol A; gentamycin.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

F-box only protein 41; hypothetical protein LOC312504; LOC312504; RGD1566130; similar to mKIAA1940 protein; uncharacterized protein LOC312504

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FBXO41 (F-box protein 41)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Fbxo41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Fbxo41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FBXO41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FBXO41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Fbxo41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FBXO41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FBXO41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Fbxo41 (F-box protein 41)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	MBTPS1 (membrane bound transcription factor peptidase, site 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	FBXO41 (F-box protein 41)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Fbxo41 (F-box protein 41)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	fbxo41 (F-box protein 41)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Danio rerio (zebrafish):	si:ch73-290k24.5	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	fbxo41	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	119,565,012 - 119,597,042 (-)	NCBI		GRCr8
mRatBN7.2	4	118,007,517 - 118,039,547 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	118,010,978 - 118,039,406 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	123,488,884 - 123,520,959 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	119,263,989 - 119,296,066 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	117,877,462 - 117,909,525 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	117,255,143 - 117,285,228 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	117,256,770 - 117,268,178 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	181,832,758 - 181,861,649 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	119,725,853 - 119,740,162 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	106,991,380 - 107,020,972 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo41	Rat	Alstrom syndrome		ISO	FBXO41 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Alstrom syndrome	ClinVar	PMID:28492532
Fbxo41	Rat	congenital disorder of glycosylation type IIb		ISO	FBXO41 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Congenital disorder of glycosylation type 2B	ClinVar	PMID:24716661 more ...
Fbxo41	Rat	dystonia		ISO	FBXO41 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Dystonia	ClinVar	PMID:16697227 more ...
Fbxo41	Rat	Methylmalonyl-CoA Epimerase Deficiency		ISO	FBXO41 (Homo sapiens)	8554872	ClinVar Annotator: match by term: METHYLMALONIC ACIDURIA III	ClinVar	PMID:16697227 more ...

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo41	Rat	17alpha-ethynylestradiol	increases expression	EXP		6480464	Ethinyl Estradiol results in increased expression of FBXO41 mRNA	CTD	PMID:29097150
Fbxo41	Rat	2,3,7,8-tetrachlorodibenzodioxine	affects expression	ISO	FBXO41 (Homo sapiens)	6480464	Tetrachlorodibenzodioxin affects the expression of FBXO41 mRNA	CTD	PMID:22574217
Fbxo41	Rat	3-isobutyl-1-methyl-7H-xanthine	multiple interactions	ISO	FBXO41 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FBXO41 mRNA	CTD	PMID:28628672
Fbxo41	Rat	4,4'-sulfonyldiphenol	decreases expression	ISO	Fbxo41 (Mus musculus)	6480464	bisphenol S results in decreased expression of FBXO41 mRNA	CTD	PMID:30951980
Fbxo41	Rat	4,4'-sulfonyldiphenol	affects methylation	ISO	Fbxo41 (Mus musculus)	6480464	bisphenol S affects the methylation of FBXO41 gene	CTD	PMID:31683443
Fbxo41	Rat	4,4'-sulfonyldiphenol	decreases methylation	ISO	Fbxo41 (Mus musculus)	6480464	bisphenol S results in decreased methylation of FBXO41 exon	CTD	PMID:33297965
Fbxo41	Rat	5-aza-2'-deoxycytidine	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	Decitabine results in decreased expression of FBXO41 mRNA	CTD	PMID:19194470
Fbxo41	Rat	aflatoxin B1	increases methylation	ISO	FBXO41 (Homo sapiens)	6480464	Aflatoxin B1 results in increased methylation of FBXO41 exon	CTD	PMID:30157460
Fbxo41	Rat	all-trans-retinoic acid	multiple interactions	ISO	Fbxo41 (Mus musculus)	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of FBXO41 mRNA	CTD	PMID:36189433
Fbxo41	Rat	antirheumatic drug	affects expression	ISO	FBXO41 (Homo sapiens)	6480464	Antirheumatic Agents affects the expression of FBXO41 mRNA	CTD	PMID:24449571
Fbxo41	Rat	aristolochic acid A	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	aristolochic acid I results in decreased expression of FBXO41 mRNA	CTD	PMID:33212167
Fbxo41	Rat	benzo[a]pyrene	increases methylation	ISO	FBXO41 (Homo sapiens)	6480464	Benzo(a)pyrene results in increased methylation of FBXO41 3' UTR	CTD	PMID:27901495
Fbxo41	Rat	benzo[a]pyrene	affects methylation	ISO	FBXO41 (Homo sapiens)	6480464	Benzo(a)pyrene affects the methylation of FBXO41 promoter	CTD	PMID:27901495
Fbxo41	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of FBXO41 mRNA	CTD	PMID:25181051 and PMID:30816183
Fbxo41	Rat	bisphenol A	decreases expression	ISO	Fbxo41 (Mus musculus)	6480464	bisphenol A results in decreased expression of FBXO41 mRNA	CTD	PMID:32156529
Fbxo41	Rat	bisphenol A	increases expression	EXP		6480464	bisphenol A results in increased expression of FBXO41 mRNA	CTD	PMID:29097150
Fbxo41	Rat	bisphenol A	multiple interactions	ISO	FBXO41 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FBXO41 mRNA	CTD	PMID:28628672
Fbxo41	Rat	cadmium dichloride	increases expression	ISO	FBXO41 (Homo sapiens)	6480464	Cadmium Chloride results in increased expression of FBXO41 mRNA	CTD	PMID:38568856
Fbxo41	Rat	chloroethene	increases expression	ISO	Fbxo41 (Mus musculus)	6480464	Vinyl Chloride results in increased expression of FBXO41 mRNA	CTD	PMID:18579281
Fbxo41	Rat	cisplatin	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	Cisplatin results in decreased expression of FBXO41 mRNA	CTD	PMID:27594783
Fbxo41	Rat	cyclosporin A	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	Cyclosporine results in decreased expression of FBXO41 mRNA	CTD	PMID:25562108
Fbxo41	Rat	dexamethasone	multiple interactions	ISO	FBXO41 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FBXO41 mRNA	CTD	PMID:28628672
Fbxo41	Rat	dicrotophos	increases expression	ISO	FBXO41 (Homo sapiens)	6480464	dicrotophos results in increased expression of FBXO41 mRNA	CTD	PMID:28302478
Fbxo41	Rat	ethanol	affects splicing	ISO	Fbxo41 (Mus musculus)	6480464	Ethanol affects the splicing of FBXO41 mRNA	CTD	PMID:30319688
Fbxo41	Rat	genistein	decreases expression	ISO	Fbxo41 (Mus musculus)	6480464	Genistein results in decreased expression of FBXO41 mRNA	CTD	PMID:32186404
Fbxo41	Rat	gentamycin	decreases expression	EXP		6480464	Gentamicins results in decreased expression of FBXO41 mRNA	CTD	PMID:33387578
Fbxo41	Rat	indometacin	multiple interactions	ISO	FBXO41 (Homo sapiens)	6480464	[INS protein co-treated with Dexamethasone co-treated with 1-Methyl-3-isobutylxanthine co-treated with Indomethacin co-treated with bisphenol A] results in decreased expression of FBXO41 mRNA	CTD	PMID:28628672
Fbxo41	Rat	lead(0)	affects expression	ISO	FBXO41 (Homo sapiens)	6480464	Lead affects the expression of FBXO41 mRNA	CTD	PMID:28903495
Fbxo41	Rat	maneb	multiple interactions	ISO	Fbxo41 (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of FBXO41 mRNA	CTD	PMID:36117858
Fbxo41	Rat	methotrexate	increases expression	ISO	FBXO41 (Homo sapiens)	6480464	Methotrexate results in increased expression of FBXO41 mRNA	CTD	PMID:24449571
Fbxo41	Rat	methyl methanesulfonate	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	Methyl Methanesulfonate results in decreased expression of FBXO41 mRNA	CTD	PMID:23649840
Fbxo41	Rat	mono(2-ethylhexyl) phthalate	multiple interactions	ISO	Fbxo41 (Mus musculus)	6480464	[mono-(2-ethylhexyl)phthalate co-treated with Tretinoin] results in decreased expression of FBXO41 mRNA	CTD	PMID:36189433
Fbxo41	Rat	monosodium L-glutamate	increases expression	ISO	Fbxo41 (Mus musculus)	6480464	Sodium Glutamate results in increased expression of FBXO41 mRNA	CTD	PMID:22078008
Fbxo41	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of FBXO41 mRNA	CTD	PMID:33387578
Fbxo41	Rat	paraquat	multiple interactions	ISO	Fbxo41 (Mus musculus)	6480464	[Maneb co-treated with Paraquat] results in decreased expression of FBXO41 mRNA	CTD	PMID:36117858
Fbxo41	Rat	pentanal	increases expression	ISO	FBXO41 (Homo sapiens)	6480464	pentanal results in increased expression of FBXO41 mRNA	CTD	PMID:26079696
Fbxo41	Rat	perfluorohexanesulfonic acid	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	perfluorohexanesulfonic acid results in decreased expression of FBXO41 mRNA	CTD	PMID:25812627
Fbxo41	Rat	perfluorononanoic acid	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	perfluoro-n-nonanoic acid results in decreased expression of FBXO41 mRNA	CTD	PMID:25812627
Fbxo41	Rat	perfluorooctane-1-sulfonic acid	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	perfluorooctane sulfonic acid results in decreased expression of FBXO41 mRNA	CTD	PMID:25812627
Fbxo41	Rat	perfluorooctanoic acid	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	perfluorooctanoic acid results in decreased expression of FBXO41 mRNA	CTD	PMID:25812627
Fbxo41	Rat	phenethyl isothiocyanate	affects binding	ISO	FBXO41 (Homo sapiens)	6480464	FBXO41 protein binds to phenethyl isothiocyanate	CTD	PMID:21838287
Fbxo41	Rat	propanal	increases expression	ISO	FBXO41 (Homo sapiens)	6480464	propionaldehyde results in increased expression of FBXO41 mRNA	CTD	PMID:26079696
Fbxo41	Rat	quercetin	increases expression	ISO	FBXO41 (Homo sapiens)	6480464	Quercetin results in increased expression of FBXO41 mRNA	CTD	PMID:21632981
Fbxo41	Rat	sunitinib	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	Sunitinib results in decreased expression of FBXO41 mRNA	CTD	PMID:31533062
Fbxo41	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of FBXO41 mRNA	CTD	PMID:33387578
Fbxo41	Rat	triphenyl phosphate	affects expression	ISO	FBXO41 (Homo sapiens)	6480464	triphenyl phosphate affects the expression of FBXO41 mRNA	CTD	PMID:37042841
Fbxo41	Rat	urethane	decreases expression	ISO	FBXO41 (Homo sapiens)	6480464	Urethane results in decreased expression of FBXO41 mRNA	CTD	PMID:28818685
Fbxo41	Rat	valproic acid	increases expression	ISO	FBXO41 (Homo sapiens)	6480464	Valproic Acid results in increased expression of FBXO41 mRNA	CTD	PMID:23179753
Fbxo41	Rat	valproic acid	affects expression	ISO	FBXO41 (Homo sapiens)	6480464	Valproic Acid affects the expression of FBXO41 mRNA	CTD	PMID:25979313

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo41	Rat	chemical synaptic transmission	acts_upstream_of_or_within	ISO	Fbxo41 (Mus musculus)	1624291	PMID:35372812	RGD	PMID:35372812
Fbxo41	Rat	chemical synaptic transmission	acts_upstream_of_or_within	IEA	UniProtKB:Q6NS60 and ensembl:ENSMUSP00000124524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fbxo41	Rat	dentate gyrus development	acts_upstream_of_or_within	ISO	Fbxo41 (Mus musculus)	1624291	PMID:35372812	RGD	PMID:35372812
Fbxo41	Rat	dentate gyrus development	acts_upstream_of_or_within	IEA	UniProtKB:Q6NS60 and ensembl:ENSMUSP00000124524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fbxo41	Rat	gene expression	acts_upstream_of_or_within	ISO	Fbxo41 (Mus musculus)	1624291	PMID:35372812	RGD	PMID:35372812
Fbxo41	Rat	gene expression	acts_upstream_of_or_within	IEA	UniProtKB:Q6NS60 and ensembl:ENSMUSP00000124524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fbxo41	Rat	hippocampus development	acts_upstream_of_or_within	ISO	Fbxo41 (Mus musculus)	1624291	PMID:35372812	RGD	PMID:35372812
Fbxo41	Rat	hippocampus development	acts_upstream_of_or_within	IEA	UniProtKB:Q6NS60 and ensembl:ENSMUSP00000124524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fbxo41	Rat	neuron maturation	acts_upstream_of_or_within	ISO	Fbxo41 (Mus musculus)	1624291	PMID:35372812	RGD	PMID:35372812
Fbxo41	Rat	neuron maturation	acts_upstream_of_or_within	IEA	UniProtKB:Q6NS60 and ensembl:ENSMUSP00000124524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Fbxo41	Rat	neuron migration	acts_upstream_of_or_within	ISO	Fbxo41 (Mus musculus)	1624291	PMID:35372812	RGD	PMID:35372812
Fbxo41	Rat	neuron migration	acts_upstream_of_or_within	IEA	UniProtKB:Q6NS60 and ensembl:ENSMUSP00000124524	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Fbxo41	Rat	synapse	located_in	IEA	GO:0007268	1600115	GO_REF:0000108	GOC	GO_REF:0000108

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:19028597

Fbxo41
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	119,565,012 - 119,597,042 (-)	NCBI		GRCr8
mRatBN7.2	4	118,007,517 - 118,039,547 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	118,010,978 - 118,039,406 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	123,488,884 - 123,520,959 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	119,263,989 - 119,296,066 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	117,877,462 - 117,909,525 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	117,255,143 - 117,285,228 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	117,256,770 - 117,268,178 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	181,832,758 - 181,861,649 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	119,725,853 - 119,740,162 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	106,991,380 - 107,020,972 (-)	NCBI		Celera
Cytogenetic Map	4	q34	NCBI

FBXO41
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	73,254,690 - 73,284,478 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	73,254,682 - 73,284,478 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	73,481,818 - 73,511,606 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	73,335,308 - 73,351,551 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	73,394,603 - 73,408,251	NCBI
Celera	2	73,332,638 - 73,347,586 (-)	NCBI		Celera
Cytogenetic Map	2	p13.2	NCBI
HuRef	2	73,217,469 - 73,232,417 (-)	NCBI		HuRef
CHM1_1	2	73,412,617 - 73,427,565 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	73,267,681 - 73,297,476 (-)	NCBI		T2T-CHM13v2.0

Fbxo41
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	85,446,556 - 85,479,976 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	85,446,556 - 85,479,976 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	85,469,574 - 85,502,994 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	85,469,574 - 85,502,994 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	85,419,572 - 85,452,880 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	85,436,185 - 85,468,652 (-)	NCBI		MGSCv36	mm8
Celera	6	87,441,520 - 87,474,821 (-)	NCBI		Celera
Cytogenetic Map	6	C3	NCBI
cM Map	6	37.48	NCBI

Fbxo41
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955424	12,349,326 - 12,378,116 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955424	12,339,588 - 12,378,116 (+)	NCBI	ChiLan1.0	ChiLan1.0

FBXO41
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	53,096,279 - 53,126,046 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	53,099,029 - 53,128,796 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	73,307,478 - 73,337,242 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	74,796,196 - 74,810,790 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	74,800,490 - 74,811,075 (-)	Ensembl	panpan1.1		panPan2

FBXO41
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	49,585,511 - 49,613,406 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	49,599,488 - 49,609,166 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	49,246,224 - 49,260,015 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	50,465,524 - 50,479,315 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	50,465,539 - 50,479,301 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	49,481,830 - 49,495,621 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	49,548,501 - 49,562,291 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	50,107,680 - 50,121,471 (+)	NCBI		UU_Cfam_GSD_1.0

Fbxo41
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	11,500,082 - 11,535,289 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936491	17,034,169 - 17,061,752 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936491	17,035,988 - 17,048,165 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FBXO41
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	69,496,651 - 69,525,845 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	3	69,496,527 - 69,525,854 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	72,699,383 - 72,729,279 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FBXO41
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	33,904,062 - 33,919,470 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	33,904,087 - 33,915,134 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666045	78,163,287 - 78,194,120 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Fbxo41
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624762	372,856 - 384,481 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624762	360,168 - 386,642 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Fbxo41
137 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	125
Count of miRNA genes:	105
Interacting mature miRNAs:	116
Transcripts:	ENSRNOT00000043201
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302051	Pia28	Pristane induced arthritis QTL 28	5.3	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	73630210	118630210	Rat
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	85253748	148090731	Rat
631689	Scl4	Serum cholesterol level QTL 4	1.9	0.008	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	4	95174120	140174120	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	105789505	150789505	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	90850165	135850165	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	116179486	151161268	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	110870972	155870972	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	59948935	154902892	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	70362013	132642728	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
738015	Pia9	Pristane induced arthritis QTL 9	4.5	0.048	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	80694870	125694870	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	109827074	154827074	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	93308457	167139447	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	106649412	151649412	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	109866907	167139601	Rat
631646	Stl4	Serum triglyceride level QTL 4	6.5	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	4	73169846	132642728	Rat
634334	Xhs3	X-ray hypersensitivity QTL 3	10		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	84728680	129854654	Rat
61406	Scwia1	Streptococcal cell wall induced arthritis QTL 1	2.3		joint integrity trait (VT:0010548)	experimental arthritis severity measurement (CMO:0001459)	4	106805662	151805662	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	109827074	154827074	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82798864	152731274	Rat
724522	Bp146	Blood pressure QTL 146	2.2	0.0021	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	73630210	118630210	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	83428419	177635233	Rat
61476	Aia3	Adjuvant induced arthritis QTL 3	3.9		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	86730991	131730991	Rat
1641919	Alc22	Alcohol consumption QTL 22		0.0005	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	81192555	126192555	Rat
631662	Hcar2	Hepatocarcinoma resistance QTL 2	3.1	0.0003	liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	78878504	123878504	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
61418	Pia5	Pristane induced arthritis QTL 5	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	62277855	128289560	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	59948935	154902892	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	85379421	167139601	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
2306899	Bp338	Blood pressure QTL 338		0.071	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	81006124	120102625	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	64528739	157573521	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	114627026	159627026	Rat
1578670	Bss14	Bone structure and strength QTL 14	16.4		femur morphology trait (VT:0000559)	bone trabecular cross-sectional area (CMO:0002311)	4	87327165	132327165	Rat
12798523	Anxrr56	Anxiety related response QTL 56	2.83	0.05	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	85253748	150276390	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
61434	Cia3	Collagen induced arthritis QTL 3	4.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	103194656	148194656	Rat
1331759	Hrtrt13	Heart rate QTL 13	3.54628		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	110275411	168266883	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1578662	Bss15	Bone structure and strength QTL 15	19.6		femur width (VT:1000666)	femoral neck width (CMO:0001695)	4	87327165	132327165	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
8	9	49	113	63	59	37	16	37	6	173	87	93	34	60	22


RefSeq Transcripts	NM_001107871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039107603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000043201 ⟹ ENSRNOP00000042876

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	118,010,978 - 118,022,375 (-)	Ensembl
Rnor_6.0 Ensembl	4	117,256,770 - 117,268,178 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000084049 ⟹ ENSRNOP00000074927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	118,010,978 - 118,039,406 (-)	Ensembl
Rnor_6.0 Ensembl	4	117,256,770 - 117,268,178 (-)	Ensembl

RefSeq Acc Id:

NM_001107871 ⟹ NP_001101341

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,565,012 - 119,597,038 (-)	NCBI
mRatBN7.2	4	118,007,517 - 118,039,547 (-)	NCBI
Rnor_6.0	4	117,255,143 - 117,285,228 (-)	NCBI
Rnor_5.0	4	181,832,758 - 181,861,649 (-)	NCBI
RGSC_v3.4	4	119,725,853 - 119,740,162 (-)	RGD
Celera	4	106,991,380 - 107,020,972 (-)	RGD

Sequence:

show sequence

TGGGGGATTCGGCCGCCCCCGCCCCAACCGGGAGGCGGCGGCGGCCACCCAAGGCTGCAGTGGGGACCAAGATCTAAGGCCCAGCGGCGGCCCTGCGTCTGGACCGGGCACGCGGGGGTCTGTGCCTC
TGCGCCCCCAGCCCAGGGCCACGGTGCCTGGCCTCACCACAGGCTGGAAGAGGCACACACAAACACAGCCCTGATCAAGCTACAGGACCTCCTCAGTAGCACACAGGGTTCCTTCCCACGAAGCCCTC
AGGGAGAGCCTCTTACTCTGACTTATGCTTGGTCTTGCTTTCCAGCTCTGGAATCCTGCAGTGTATTCGGTTTGGCTTCTCTCCTCCTCCGGGGCCCTGGCTGTTGGTGTACCCAGTCTTTTTGATCT
CACAGGCCGGGCCCACCCGCGGCCCCCCATGAGCGCGCCCGGCTGACCCTGGAGGCGGCCGCGGTGGAGCCGGCGCGCCCCAAGGGCGGCTGGGCCATGGCCTCGCTGGACCTACCGTACCGCTGCCC
GCGCTGCGGGGAGCATAAGCGCTTCCGGAGCCTGTCGTCGTTGCGCGCGCACCTGGAATACAGCCACACCTACGAGACGCTCTACATCCTCTCCAAGACCAACAGCATCTGCGACGGCGCGGCCGCCG
CTGCAGCTGCAGCTGCCGCAGCCTCTGGCTTCCCTCTGGCGCCTGAGCCCGCGGCCCTGCTGGCTGTCCCCGGGGCCCGGCGCGAGGTCTTCGAGAGCACGTCCTTCCAGGGCAAGGAGCAGGCAGCG
GGGCCAGCGCCCGCGGGGCCGCACCTGCTGCACCATCATCACCACCACGCGCCACTGGCGCATTTCCCCGGTGACCTGGTGCCCGCCAGCCTGCCCTGCGAGGAGCTGGCCGAGCCGGGGCTCGTGCC
CGCTGCGCGCTATGCGCTACGCGAAATCGAAATCCCACTCGGCGAGCTCTTCGCGCGCAAGTCCGTGGCATCCTCGGCCTGCTCGACGCCGCCACCCGGACCTGGCCCTGGTCCTTGTTCCGGGCCTA
CCTCTGCATCGCCGGCGTCGCCATCACCTGCGGACGTCGCCTACGAAGAGGGCTTGGCACGCCTCAAGATCCGCGCCCTGGAGAAGCTGGAGGTGGACCGGAGACTAGAGCGGCTGAGCGAGGAGGTG
GAGCAGAAGATCGCGGGCCAGGTGGGTCGGCTACAGGCTGAACTGGAGCGCAAGGCAGCAGAGTTGGAGACTGCACGACAGGAGAGCGCGCGCCTGGGGCGTGAGAAGGAGGAACTGGAGGAGCGCGC
GTCTGAGCTCTCGCGCCAAGTGGACGTGAGCGTGGAACTGCTGGCTTCGCTCAAGCAGGACCTGGTGCATAAGGAACAGGAGCTGAGCCGCAAGCAGCAGGAGGTGGTGCAGATCGACCAGTTCCTGA
AAGAGACGGCAGCCCGGGAGGCCAGTGCCAAGCTGCGGCTGCAACAGTTCATTGAGGAGCTCCTGGAGCGTGCAGACAGGGCTGAGCGCCAGTTGCAGGTCATCAGCAGCAGCTGTGGCAGCACTCCC
AGTGCCAGCCTGGGCAGAGGAGGTGGGGGCAGTGCCTCGGGGCCTGGGCTGAGAGGCCCAGGCAGAATGCGAGAACACCATGCAGGCCCAGCTGTGCCAAGCACATATGCTGTATCACGGCATGGCTC
CTCTCCCAGCACAGGGGCCTCCAGCCGTGTGCCAGCTGCATCCCAGAGCTCAGGCTGCTATGACAGTGACAGTCTGGAGCTACCCCGACAAGAGGAAGGGCCCTCGGAGGACAGTGGCCCTGGGGGCT
TGGGTTCACGGGCCCAGGCAACCAACGGTGGTTCAGAGCGGTCCCAGCCCCCTCGTAGTTCAGGTCTACGAAGACAGGCCATCCAGAACTGGCAGCGCCGACCGCGCCGTCATAGCACGGAAGGGGAG
GAAGGTGACGTCTCAGATGTGGGCTCCCGAACTACTGAGTCAGAGGCTGAAGGACCCTCTGATGTCCCACGCCCTGGACCTGCTGTGGCTGGACCCTTGAACAGCTGCCGGCTCTCGGCCCGCCCTGA
AGGAGGCAGCGGGCGAGGCCGACGGATGGAGAGAGGCAGCCCCTCACGCTCCAATGAGGTCATCAGCCCAGAAATCCTCAAGATGCGTGCTGCCCTCTTCTGTATCTTCACCTACCTGGATACCCGGA
CACTGCTACATGCTGCAGAGGTCTGCCGGGACTGGCGCTTTGTGGCGCGCCATCCCGCTGTCTGGACGAGAGTGCTGCTCGAGAACGCTCGAGTCTGTTCCAAGTTCCTGGCGATGTTGGCTCAGTGG
TGCACCCAGGCTCACTCATTAACATTACAGAACCTGAAGCCCCGGCAGCGGGGAAAGAAGGAAAGCAAGGAGGAGTATGCCCGCAGCACCCGGGGCTGCCTTGAAGCAGGGCTGGAGTCCCTGCTGAA
GGCCGCTGGTGGGAACCTGCTGATCCTGCGGATCTCCCACTGCCCCAACATCCTCACTGACCGGTCACTCTGGCTGGCCAGCTGCTACTGCCGTGCCCTGCAGGCTGTCACCTACAGGAGTGCCACGG
ACCCTGTCGGCCATGAGGTGATCTGGGCCCTGGGCGCAGGCTGCAGAGACATTGTCTCCCTCCAGGTGGCTCCACTTCACCCCTGCCAGCAGCCCACCCGGTTCAGCAACCGTTGCCTGCAGATGATT
GGACGCTGTTGGCCCCACCTCCGGGCCCTGGGCGTAGGTGGTGCCGGCTGTGGGGTACAGGGCCTGGCATCACTTGCAAGAAACTGTATGCGGCTGCAGGTCCTGGAACTGGACCACGTGTCAGAGAT
TACCCAGGAGGTGGCGGCAGAGGTCTGCCGGGAAGGCCTGAAAGGACTGGAGATGCTGGTGCTCACAGCCACCCCTGTCACCCCTAAGGCCCTGCTACATTTTAACAGCATCTGCCGGAACCTCAAAT
CCATTGTGGTGCAGATTGGGATTGCAGATTACTTCAAAGAGCCCAGCAGTCCCGAGGCCCAGAAGCTGTTTGAGGATATGGTGACAAAACTCCAGGCCCTGAGACGGAGGCCTGGCTTCTCGAAGATT
CTGCACATCAAGGTAGAAGGTGGCTGCTAACCCGGCCACACCAAGTGCTCTTTGGACCTCTGGAGGGGCCCTGGCTTGGACTAGACCTTTGGAGGCTTAGTGTTTCCCCAGGTTCCAGACAGTGGTTG
AATATCCTGTCCAGTTGGGACAGCAGAGTGACAGGTGACCCAGAGCACTGCCTGCCCAGGACAGGGGCTGAAAAGAAGCTGCCCTGAGACACCTCCCCCCTCACATTCCCAGCTGAAACAGCCTCTGG
CACAGCCAGCAAGGAGCTGAGCCGACACACCAGCAGCTGGTTGTCACTGCTCAGAGGATCTGCAGTAGCCACCCAGCAGCTCCTCAGCTGCTCAGGCAGGTCTCCTTCCTGAGGCCATCTCCTGGTCA
GGAGCCTGTCAAGCCACAGGCCAGAAGGGGCTTAAGGCAGCTCAGACATGACAAGGAGGACTCTTCTCCCCTTTCCCTGACCAAGCCCTCTGTAAGGCACTCCCTTTGGACAGAGAGACTTTCTTCCA
GGTCCACATTCTCCTGTGATAATCCAGGCAAGTCTAGGAATCCAAGTACAAGGTTAGCTGAAGTTGGGGCAGGGCCATAGGGTTGAATTTCAAAAGGTTAAAAAAAAAAAAAAAAGGTCTAGAACACA
CCAGGACGAGACCTGCACCTCCCAAGCAGGCAGAGGACTGGCCAGTTGGAGGAGGCTACTCCTAAGACAGAGTTCTTGTCATCACACTCCAGAGCTAAGCTCAAAGTAGTCTATACCGCTCCTTGCTG
AGGGATCAGAGAGCTGGGGTCCCACCAAAGCCCTACAGTGAGAAGGGACCCAGGCATTTTGGCAGGATTCCCAAGCCTTTCAGGTCCCTAGGCCATTGGGAGGGGGGACTCTGGGTTACCTGCTGTGC
TGGAGTTTGGGGGAGGGGGAGTGGCGTTACCTAACAGAGGAATCACTTCCACAGCCCGTCTTCCTGAGTCTTTACAGTCCTGGGCTGAAACTATAGTAGGAGAATACTTGTGGTATGGTGTCGCTGGC
CCTTGCATCATACCCAGGAAGTCTGGTCACCAAACCCCACAGACTGAGCATCCCCTAACTGAATTCCTCTGCTCGGAACTTGCAGTGGCCAAGACACAGGTCTTGGCCACCCTCATTTGGGCAGATCT
TTCAAATGCCTGGTTTGTCATCCACATCTTAGGGTTTTCTTTGCTCCTTTATAAGGTGGGATCCTCTTGCCAGTTTTCTCCAGCTGTGCACAACCTGGACTGGGCACAAACACATCTGTAGGTTGTTG
CCAAACAAGTCCCTTCCACTGCTGCACAGCCTCCAGCTGGATGCTCCCTGACCCTATAGCTCTGTCCCAGTTTGTCATCATCGCTGAGCTGTGTGGCTTGTTCTGTACCTGCTCCTTACAGACTGAAA
TGCCAAGGCTGTCGTGCTGGGTACTCCACGCCTCGTCCTGCATGTAACCTTGGCTGTGCGGTATCTATGCCCCTACCTCTCACAGCTGCCTCCGGTTGCTCCCACCTCCCCAGCCTTGTCCCCAGGAG
TCACAGGCAACAGCACAACTTTCCTCCTTCAGTGGCCCAGAAAGGGGGTGGAGGTGCGCTTGGGCCCCAGCTGCCTTTAGTAGGTCAGGTGT

hide sequence

RefSeq Acc Id:

XM_039107602 ⟹ XP_038963530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,565,012 - 119,597,042 (-)	NCBI
mRatBN7.2	4	118,007,517 - 118,039,547 (-)	NCBI

RefSeq Acc Id:

XM_039107603 ⟹ XP_038963531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	119,565,012 - 119,597,042 (-)	NCBI
mRatBN7.2	4	118,007,517 - 118,039,547 (-)	NCBI


Protein RefSeqs	NP_001101341	(Get FASTA)	NCBI Sequence Viewer
	XP_038963530	(Get FASTA)	NCBI Sequence Viewer
	XP_038963531	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL91195	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000042876
	ENSRNOP00000042876.6
	ENSRNOP00000074927.2
	ENSRNOP00000112418

RefSeq Acc Id:

NP_001101341 ⟸ NM_001107871

- UniProtKB:

A0A0G2K9A9 (UniProtKB/TrEMBL), A6IAS7 (UniProtKB/TrEMBL), D3ZT20 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKTNSICDGAAAAAAAAAAASGFPLAPEPAALLAVPGARREVFESTSFQGKEQAAGPAPAGPHLLHHHHHHAPLAHFPGDLVPASLP
CEELAEPGLVPAARYALREIEIPLGELFARKSVASSACSTPPPGPGPGPCSGPTSASPASPSPADVAYEEGLARLKIRALEKLEVDRRLERLSEEVEQKIAGQVGRLQAELERKAAELETARQESARL
GREKEELEERASELSRQVDVSVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERADRAERQLQVISSSCGSTPSASLGRGGGGSASGPGLRGPGRMREHHAGPAV
PSTYAVSRHGSSPSTGASSRVPAASQSSGCYDSDSLELPRQEEGPSEDSGPGGLGSRAQATNGGSERSQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDVPRPGPAVAGP
LNSCRLSARPEGGSGRGRRMERGSPSRSNEVISPEILKMRAALFCIFTYLDTRTLLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQRGKKESKEEYARSTRG
CLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCRALQAVTYRSATDPVGHEVIWALGAGCRDIVSLQVAPLHPCQQPTRFSNRCLQMIGRCWPHLRALGVGGAGCGVQGLASLARNCMRL
QVLELDHVSEITQEVAAEVCREGLKGLEMLVLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALRRRPGFSKILHIKVEGGC

hide sequence

Ensembl Acc Id:

ENSRNOP00000042876 ⟸ ENSRNOT00000043201

Ensembl Acc Id:

ENSRNOP00000074927 ⟸ ENSRNOT00000084049

RefSeq Acc Id:	XP_038963530 ⟸ XM_039107602
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9A9 (UniProtKB/TrEMBL), A6IAS7 (UniProtKB/TrEMBL), D3ZT20 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038963531 ⟸ XM_039107603
- Peptide Label:	isoform X1
- UniProtKB:	A0A0G2K9A9 (UniProtKB/TrEMBL), A6IAS7 (UniProtKB/TrEMBL), D3ZT20 (UniProtKB/TrEMBL)

Protein Domains

F-box

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZT20-F1-model_v2	AlphaFold	D3ZT20	1-870	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-43939	BioCyc
Ensembl Genes	ENSRNOG00000033202	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000043201	ENTREZGENE
	ENSRNOT00000043201.6	UniProtKB/TrEMBL
	ENSRNOT00000084049.2	UniProtKB/TrEMBL
	ENSRNOT00000162245	ENTREZGENE
Gene3D-CATH	1.20.1280.50	UniProtKB/TrEMBL
	3.80.10.10	UniProtKB/TrEMBL
InterPro	F-box_dom	UniProtKB/TrEMBL
	F-box_dom_like	UniProtKB/TrEMBL
	GenomicStab_NeuMorph_Reg	UniProtKB/TrEMBL
	LRR_dom_sf	UniProtKB/TrEMBL
KEGG Report	rno:312504	UniProtKB/TrEMBL
NCBI Gene	312504	ENTREZGENE
PANTHER	F-BOX ONLY PROTEIN 41	UniProtKB/TrEMBL
	ZINC FINGER PROTEIN	UniProtKB/TrEMBL
Pfam	F-box-like	UniProtKB/TrEMBL
PhenoGen	Fbxo41	PhenoGen
RatGTEx	ENSRNOG00000033202	RatGTEx
Superfamily-SCOP	RNI-like	UniProtKB/TrEMBL
	SSF81383	UniProtKB/TrEMBL
UniProt	A0A0G2K9A9	ENTREZGENE, UniProtKB/TrEMBL
	A6IAS7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZT20	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-12	Fbxo41	F-box protein 41	RGD1566130	similar to mKIAA1940 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1566130	similar to mKIAA1940 protein	RGD1566130_predicted	similar to mKIAA1940 protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1566130_predicted	similar to mKIAA1940 protein (predicted)	LOC312504	similar to mKIAA1940 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC312504	similar to mKIAA1940 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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Imported Disease Annotations - ClinVar