D4Rat88 Marker Search Result - Rat Genome Database

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Marker: D4Rat88

Symbol: D4Rat88
Previously known as: oxsts11014; R0072-C11; 
RGD ID: 38412
Expected Size: 239 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24130,018,906 - 130,019,145 (+)MAPPERmRatBN7.2
Rnor_6.04129,783,241 - 129,783,479NCBIRnor6.0
Rnor_5.04194,279,802 - 194,280,040UniSTSRnor5.0
RGSC_v3.44132,142,791 - 132,143,030RGDRGSC3.4
RGSC_v3.44132,142,792 - 132,143,030UniSTSRGSC3.4
RGSC_v3.14132,387,617 - 132,387,963RGD
Celera4118,893,705 - 118,893,943UniSTS
SHRSP x BN Map456.66UniSTS
SHRSP x BN Map456.66RGD
FHH x ACI Map477.9799RGD
Cytogenetic Map4q34UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   SD/Rij   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
Genes:   Frmd4b  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines


 
Forward Primer GAAGCCATTCATCTTGTGCC
Reverse Primer CCACAAGGGAGTAAGACCGA
 
Template 
GTCGACTCTAGAGGATCCCCCCACCCTCTAACCCTAGCAGTGCATAAGAGGAAAGGGGATTGCT
GGGACCTGCTGATTGACAGCCTAACTCCAGATTCAATAACAAACCCTGCCACAAGGGAGTAAGA
CCGAGAGTTATAAATAAAGCAAGATGCCCACTGCTCTCTGCTGGTCTCTGCATACATGTGTGTG
GATACACCACAAACACATACATCACACACATACACTCACACACACACATACTCACAGACACACA
CATCACACACACACACAGACACACAGACACACACACACACACACACACACACACACACACACCA
AAAAGAGAGGTGGCACAAGATGAATGGCTTCCTTTGAGGACTTGGGGGGTANGAGCTCGAATTC
GTAATCATGGTCATAGTGTTTCCTGTGTGNAATTGTTATCCGCTCACAATTCCACACAACATAC
GAGCCGGAAGCATANNGTGTAANGCCTGGGGTGNTAATGAGTGAGTNCTCNCATTNATTGCGTT
NCGTCA
Strain, Expected Size(s)

ACI/N 242 AVN/Orl 246 BBDP/Rhw 242
BBDR/Rhw 242 BC/CpbU 240 BDIX/Han 240
BDVII/Cub 242 BN-Lx/Cub 242 BN/SsNHsd 242
BP/Cub 242 BUF/Pit 242 COP/OlaHsd 242
DA/PitN 242 DON/Melb 242 F344/Pit 242
FHH/Eur 240 GH/Omr 240 GK/KyoSwe 244
IS/Kyo 246 LE/Mol 242 LEW/Pit 242
LH/Mav 242 LN/Mav 242 LOU/CHan 242
M520/N 242 MHS/Gib 242 MNR/N 242
MNRA/N 242 MNS/Gib 242 MR/Pit 240
NEDH/K 242 NP9 242 ODU/N 242
OKA/Wsl 244 OM/Ztm 240 P5C 242
SD/Rij 242 SR/Jr 242 SS/Jr 242
WF/Pit 242 WKY/OlaHsd 242 WN/N 242
WTC/Kyo 242


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
620172Frmd4bFERM domain containing 4B4129895401130222070Rat
GenBank Nucleotide CH473957 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 49 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat

1 to 10 of 49 rows


Database
Acc Id
Source(s)
NCBI Gene 252858 UniSTS