| 1582232 | Gluco25 | Glucose level QTL 25 | 3.6 | 0.0023 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 4 | 85253748 | 148090731 | Rat |
| 631689 | Scl4 | Serum cholesterol level QTL 4 | 1.9 | 0.008 | blood cholesterol amount (VT:0000180) | serum total cholesterol level (CMO:0000363) | 4 | 95174120 | 140174120 | Rat |
| 1358352 | Srcrt3 | Stress Responsive Cort QTL 3 | 2.29 | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 4 | 38465774 | 146803430 | Rat |
| 1578655 | Bmd11 | Bone mineral density QTL 11 | 11 | | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 4 | 90850165 | 135850165 | Rat |
| 1300116 | Hrtrt5 | Heart rate QTL 5 | 3.76 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 4 | 116179486 | 151161268 | Rat |
| 10755501 | Bp390 | Blood pressure QTL 390 | 2.5 | | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 4 | 26775591 | 168368347 | Rat |
| 631683 | Bp116 | Blood pressure QTL 116 | | 0.0001 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 124303370 | 169303370 | Rat |
| 61451 | Ciaa4 | CIA Autoantibody QTL 4 | 3.1 | | blood autoantibody amount (VT:0003725) | calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281) | 4 | 126395976 | 167139601 | Rat |
| 61330 | Eau1 | Experimental allergic uveoretinitis QTL 1 | | 0.0003 | uvea integrity trait (VT:0010551) | experimental autoimmune uveitis score (CMO:0001504) | 4 | 70362013 | 132642728 | Rat |
| 731165 | Uae21 | Urinary albumin excretion QTL 21 | 2.4 | 0.0001 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 4 | 106649412 | 151649412 | Rat |
| 737821 | Hcar9 | Hepatocarcinoma resistance QTL 9 | 3.7 | | liver integrity trait (VT:0010547) | volume of individual liver tumorous lesion (CMO:0001078) | 4 | 109866907 | 167139601 | Rat |
| 7411558 | Bw133 | Body weight QTL 133 | 13.84 | 0.001 | body mass (VT:0001259) | body weight gain (CMO:0000420) | 4 | 125590636 | 170590636 | Rat |
| 1549832 | Bss3 | Bone structure and strength QTL 3 | 11 | | femur morphology trait (VT:0000559) | femur midshaft cortical cross-sectional area (CMO:0001663) | 4 | 109827074 | 154827074 | Rat |
| 70177 | Xhs1 | X-ray hypersensitivity QTL 1 | 25.1 | | intestine integrity trait (VT:0010554) | post-insult time to onset of moribundity (CMO:0001896) | 4 | 82798864 | 152731274 | Rat |
| 61476 | Aia3 | Adjuvant induced arthritis QTL 3 | 3.9 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 4 | 86730991 | 131730991 | Rat |
| 1354660 | Salc1 | Saline consumption QTL 1 | 11.26 | | drinking behavior trait (VT:0001422) | saline drink intake rate (CMO:0001627) | 4 | 44463908 | 148090542 | Rat |
| 1298082 | Stresp4 | Stress response QTL 4 | | | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 4 | 50119848 | 146803430 | Rat |
| 1578670 | Bss14 | Bone structure and strength QTL 14 | 16.4 | | femur morphology trait (VT:0000559) | bone trabecular cross-sectional area (CMO:0002311) | 4 | 87327165 | 132327165 | Rat |
| 70201 | Gcr1 | Gastric cancer resistance QTL 1 | 2.7 | | stomach morphology trait (VT:0000470) | stomach tumor susceptibility score (CMO:0002043) | 4 | 120260281 | 147278687 | Rat |
| 70200 | Alc18 | Alcohol consumption QTL 18 | 9.2 | | drinking behavior trait (VT:0001422) | ethanol intake volume to total fluid intake volume ratio (CMO:0001591) | 4 | 56647873 | 149491524 | Rat |
| 1331759 | Hrtrt13 | Heart rate QTL 13 | 3.54628 | | heart pumping trait (VT:2000009) | heart rate (CMO:0000002) | 4 | 110275411 | 168266883 | Rat |
| 724535 | Cm18 | Cardiac mass QTL 18 | 2.6 | | heart mass (VT:0007028) | calculated heart weight (CMO:0000073) | 4 | 118856416 | 163856416 | Rat |
| 2316958 | Gluco58 | Glucose level QTL 58 | 10 | | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 4 | 11320076 | 180699135 | Rat |
| 1578662 | Bss15 | Bone structure and strength QTL 15 | 19.6 | | femur width (VT:1000666) | femoral neck width (CMO:0001695) | 4 | 87327165 | 132327165 | Rat |
| 2302049 | Pia32 | Pristane induced arthritis QTL 32 | 5.1 | 0.001 | blood autoantibody amount (VT:0003725) | serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112) | 4 | 105789505 | 150789505 | Rat |
| 6478763 | Anxrr46 | Anxiety related response QTL 46 | | 0.07428 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 4 | 110870972 | 155870972 | Rat |
| 6478760 | Anxrr45 | Anxiety related response QTL 45 | | 0.06717 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 4 | 110870972 | 155870972 | Rat |
| 1331802 | Srn5 | Serum renin concentration QTL 5 | 3.045 | | renin activity (VT:0005581) | plasma renin activity level (CMO:0000116) | 4 | 119428175 | 157578333 | Rat |
| 738009 | Sach4 | Saccharine consumption QTL 4 | 4.9 | 0.000016 | consumption behavior trait (VT:0002069) | saccharin intake volume to total fluid intake volume ratio (CMO:0001601) | 4 | 59948935 | 154902892 | Rat |
| 2312567 | Glom19 | Glomerulus QTL 19 | 1.9 | 0.006 | kidney glomerulus morphology trait (VT:0005325) | index of glomerular damage (CMO:0001135) | 4 | 45456990 | 146803430 | Rat |
| 7207480 | Bss105 | Bone structure and strength QTL 105 | 8.1 | | femur strength trait (VT:0010010) | femur midshaft polar moment of inertia (CMO:0001669) | 4 | 109827074 | 154827074 | Rat |
| 634335 | Anxrr16 | Anxiety related response QTL 16 | 7.22 | | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 4 | 93308457 | 167139447 | Rat |
| 631646 | Stl4 | Serum triglyceride level QTL 4 | 6.5 | 0.0001 | blood triglyceride amount (VT:0002644) | plasma triglyceride level (CMO:0000548) | 4 | 73169846 | 132642728 | Rat |
| 634334 | Xhs3 | X-ray hypersensitivity QTL 3 | 10 | | intestine integrity trait (VT:0010554) | post-insult time to onset of moribundity (CMO:0001896) | 4 | 84728680 | 129854654 | Rat |
| 6478778 | Anxrr51 | Anxiety related response QTL 51 | | 0.25384 | locomotor behavior trait (VT:0001392) | measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957) | 4 | 124778595 | 169778595 | Rat |
| 61406 | Scwia1 | Streptococcal cell wall induced arthritis QTL 1 | 2.3 | | joint integrity trait (VT:0010548) | experimental arthritis severity measurement (CMO:0001459) | 4 | 106805662 | 151805662 | Rat |
| 1354612 | Foco1 | Food consumption QTL 1 | 8.87 | | eating behavior trait (VT:0001431) | food intake rate (CMO:0000427) | 4 | 44463908 | 148090542 | Rat |
| 634347 | Hcar8 | Hepatocarcinoma resistance QTL 8 | 5.8 | | liver integrity trait (VT:0010547) | liver tumorous lesion area to total liver area ratio (CMO:0001075) | 4 | 123143783 | 168143783 | Rat |
| 2303168 | Bp330 | Blood pressure QTL 330 | 4.25 | 0.017 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 4 | 5214602 | 146446691 | Rat |
| 738031 | Alc14 | Alcohol consumption QTL 14 | 7.6 | 0.00003 | consumption behavior trait (VT:0002069) | ethanol drink intake rate to body weight ratio (CMO:0001616) | 4 | 59948935 | 154902892 | Rat |
| 1576316 | Ept5 | Estrogen-induced pituitary tumorigenesis QTL 5 | 3.8 | | pituitary gland mass (VT:0010496) | pituitary gland wet weight (CMO:0000853) | 4 | 83428419 | 177635233 | Rat |
| 1576305 | Emca6 | Estrogen-induced mammary cancer QTL 6 | 5.8 | | mammary gland integrity trait (VT:0010552) | mammary tumor number (CMO:0000343) | 4 | 44463720 | 155883716 | Rat |
| 61418 | Pia5 | Pristane induced arthritis QTL 5 | 4.5 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 4 | 62277855 | 128289560 | Rat |
| 738016 | Alc16 | Alcohol consumption QTL 16 | 3.6 | 0.00015 | consumption behavior trait (VT:0002069) | ethanol drink intake rate to body weight ratio (CMO:0001616) | 4 | 59948935 | 154902892 | Rat |
| 1358202 | Gluco11 | Glucose level QTL 11 | 2.4 | 0.02 | adipocyte glucose uptake trait (VT:0004185) | absolute change in adipocyte glucose uptake (CMO:0000873) | 4 | 85379421 | 167139601 | Rat |
| 631674 | Iddm14 | Insulin dependent diabetes mellitus QTL 14 | | | blood glucose amount (VT:0000188) | plasma glucose level (CMO:0000042) | 4 | 64528739 | 157573521 | Rat |
| 2293840 | Kiddil9 | Kidney dilation QTL 9 | 2.9 | | kidney pelvis morphology trait (VT:0004194) | hydronephrosis severity score (CMO:0001208) | 4 | 120926564 | 148090731 | Rat |
| 12798519 | Anxrr54 | Anxiety related response QTL 54 | 2.54 | 0.05 | locomotor behavior trait (VT:0001392) | distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493) | 4 | 114627026 | 159627026 | Rat |
| 12798523 | Anxrr56 | Anxiety related response QTL 56 | 2.83 | 0.05 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 4 | 85253748 | 150276390 | Rat |
| 61434 | Cia3 | Collagen induced arthritis QTL 3 | 4.8 | | joint integrity trait (VT:0010548) | joint inflammation composite score (CMO:0000919) | 4 | 103194656 | 148194656 | Rat |
| 12798527 | Anxrr58 | Anxiety related response QTL 58 | 4.11 | 0.05 | locomotor behavior trait (VT:0001392) | distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493) | 4 | 119463257 | 147278687 | Rat |
