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Gene: RGD1560289 (similar to chromosome 3 open reading frame 20) Rattus norvegicus
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Symbol: RGD1560289
Name: similar to chromosome 3 open reading frame 20
RGD ID: 1560289
Description: Predicted to localize to cytoplasm. Orthologous to human C3orf20 (chromosome 3 open reading frame 20); INTERACTS WITH bisphenol A; endosulfan; valproic acid.
Type: protein-coding
RefSeq Status: PREDICTED
Also known as: hypothetical protein LOC500258; LOC500258; uncharacterized protein C3orf20 homolog; uncharacterized protein LOC500258
Orthologs:
Homo sapiens (human) : C3orf20 (chromosome 3 open reading frame 20)  HGNC  Alliance
Mus musculus (house mouse) : 4930590J08Rik (RIKEN cDNA 4930590J08 gene)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : LOC102007256 (chromosome unknown open reading frame, human C3orf20)
Pan paniscus (bonobo/pygmy chimpanzee) : C3H3orf20 (chromosome 3 C3orf20 homolog)
Canis lupus familiaris (dog) : C20H3orf20 (chromosome 20 C3orf20 homolog)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : CUNH3orf20 (chromosome unknown C3orf20 homolog)
Sus scrofa (pig) : C13H3orf20 (chromosome 13 C3orf20 homolog)
Chlorocebus sabaeus (African green monkey) : C22H3orf20 (chromosome 22 open reading frame, human C3orf20)
Heterocephalus glaber (naked mole-rat) : CUNH3orf20 (chromosome unknown C3orf20 homolog)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04123,790,516 - 123,839,149 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4123,801,174 - 123,837,662 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04189,422,410 - 189,471,018 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44126,105,132 - 126,151,107 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4113,350,111 - 113,387,172 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on RGD1560289
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1560289
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.