Ruvbl1 (RuvB-like AAA ATPase 1) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Community Projects Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ruvbl1 (RuvB-like AAA ATPase 1) Rattus norvegicus
Analyze
Symbol: Ruvbl1
Name: RuvB-like AAA ATPase 1
RGD ID: 68373
Description: Enables 3'-5' DNA helicase activity. Involved in positive regulation of plasminogen activation and regulation of fibroblast apoptotic process. Located in nuclear matrix. Part of protein-containing complex. Orthologous to human RUVBL1 (RuvB like AAA ATPase 1); PARTICIPATES IN INO80 family mediated chromatin remodeling pathway; Wnt signaling pathway; INTERACTS WITH (+)-schisandrin B; 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 49 kDa TATA box-binding protein-interacting protein; 49 kDa TBP-interacting protein; DNA helicase p50; NMP238; pontin 52; Pontin52; ruvB-like 1; RuvB-like 1 (E. coli); RuvB-like protein 1; Tip49a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Ruvbl1-ps1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,932,486 - 120,967,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,932,417 - 121,029,384 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4126,403,089 - 126,438,005 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04122,177,844 - 122,212,760 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,802,088 - 120,837,004 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04120,411,917 - 120,447,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4120,411,991 - 120,447,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,651,851 - 185,687,385 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,556,857 - 122,591,769 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14122,801,337 - 122,836,249 (+)NCBI
Celera4109,888,321 - 109,923,233 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (EXP,ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
2,6-dinitrotoluene  (EXP)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4-amino-2,6-dinitrotoluene  (EXP)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
ammonium chloride  (EXP)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
azoxystrobin  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
bleomycin A5  (ISO)
captan  (ISO)
ceruletide  (EXP)
chromium(6+)  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
decabromodiphenyl ether  (EXP)
diarsenic trioxide  (ISO)
dibutyl phthalate  (ISO)
disodium selenite  (ISO)
dopamine  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethyl methanesulfonate  (ISO)
finasteride  (EXP)
flavonoids  (EXP)
flutamide  (EXP)
geraniol  (ISO)
glyphosate  (ISO)
ivermectin  (ISO)
methidathion  (ISO)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
N-methyl-N'-nitro-N-nitrosoguanidine  (ISO)
nickel atom  (ISO)
ochratoxin A  (EXP)
oxaliplatin  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
pentachlorophenol  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (EXP)
propiconazole  (EXP)
quercetin  (ISO)
rotenone  (EXP,ISO)
selenium atom  (ISO)
sodium arsenite  (EXP,ISO)
T-2 toxin  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (EXP)
topotecan  (EXP)
trimellitic anhydride  (ISO)
urethane  (ISO)
valproic acid  (ISO)
zinc dichloride  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. TIP49, but not TRRAP, modulates c-Myc and E2F1 dependent apoptosis. Dugan KA, etal., Oncogene. 2002 Aug 29;21(38):5835-43.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
4. Purification, cloning, and characterization of a profibrinolytic plasminogen-binding protein, TIP49a. Hawley SB, etal., J Biol Chem 2001 Jan 5;276(1):179-86.
5. Molecular cloning of a rat 49-kDa TBP-interacting protein (TIP49) that is highly homologous to the bacterial RuvB. Kanemaki M, etal., Biochem Biophys Res Commun 1997 Jun 9;235(1):64-8.
6. Molecular shape and ATP binding activity of rat p50, a putative mammalian homologue of RuvB DNA helicase. Kikuchi N, etal., J Biochem (Tokyo) 1999 Mar;125(3):487-94.
7. A notable example of an evolutionary conserved gene: studies on a putative DNA helicase TIP49. Kurokawa Y, etal., DNA Seq. 1999;10(1):37-42.
8. A rat RuvB-like protein, TIP49a, is a germ cell-enriched novel DNA helicase. Makino Y, etal., J Biol Chem 1999 May 28;274(22):15329-35.
9. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
10. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
11. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
12. GOA pipeline RGD automated data pipeline
13. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
15. Tentative Sequence Identification Numbers Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
16. The INO80 family of chromatin-remodeling enzymes: regulators of histone variant dynamics. Watanabe S and Peterson CL, Cold Spring Harb Symp Quant Biol. 2010;75:35-42. doi: 10.1101/sqb.2010.75.063. Epub 2011 Apr 18.
Additional References at PubMed
PMID:9843967   PMID:10966108   PMID:11080158   PMID:12477932   PMID:14966270   PMID:15489334   PMID:15960975   PMID:16025302   PMID:17636026   PMID:18026119   PMID:19299493   PMID:20458337  
PMID:21303910   PMID:23376485   PMID:24463511   PMID:24625528   PMID:24912190   PMID:25467444   PMID:25468996   PMID:26711270   PMID:28755400   PMID:30053369  


Genomics

Comparative Map Data
Ruvbl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24120,932,486 - 120,967,400 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4120,932,417 - 121,029,384 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4126,403,089 - 126,438,005 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04122,177,844 - 122,212,760 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04120,802,088 - 120,837,004 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04120,411,917 - 120,447,458 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4120,411,991 - 120,447,455 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04185,651,851 - 185,687,385 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44122,556,857 - 122,591,769 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14122,801,337 - 122,836,249 (+)NCBI
Celera4109,888,321 - 109,923,233 (+)NCBICelera
Cytogenetic Map4q34NCBI
RUVBL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh383128,064,785 - 128,153,914 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl3128,064,778 - 128,153,914 (-)EnsemblGRCh38hg38GRCh38
GRCh373127,783,628 - 127,872,757 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 363129,282,493 - 129,325,332 (-)NCBINCBI36Build 36hg18NCBI36
Build 343129,282,500 - 129,325,340NCBI
Celera3126,230,848 - 126,272,604 (-)NCBICelera
Cytogenetic Map3q21.3NCBI
HuRef3125,180,247 - 125,223,118 (-)NCBIHuRef
CHM1_13127,763,012 - 127,805,897 (-)NCBICHM1_1
T2T-CHM13v2.03130,799,360 - 130,895,553 (-)NCBIT2T-CHM13v2.0
Ruvbl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39688,442,391 - 88,474,548 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl688,442,391 - 88,474,554 (+)EnsemblGRCm39 Ensembl
GRCm38688,465,409 - 88,497,566 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl688,465,409 - 88,497,572 (+)EnsemblGRCm38mm10GRCm38
MGSCv37688,415,417 - 88,447,560 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36688,431,107 - 88,463,207 (+)NCBIMGSCv36mm8
Celera690,403,044 - 90,439,348 (+)NCBICelera
Cytogenetic Map6D1NCBI
cM Map639.51NCBI
Ruvbl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542915,598,465 - 15,633,713 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542915,598,465 - 15,632,290 (+)NCBIChiLan1.0ChiLan1.0
RUVBL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan13126,003,787 - 126,083,009 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v03125,120,524 - 125,200,859 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.13132,486,229 - 132,528,925 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl3132,486,229 - 132,528,918 (-)Ensemblpanpan1.1panPan2
RUVBL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1202,095,807 - 2,137,528 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl202,095,786 - 2,137,579 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha202,132,722 - 2,174,676 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0202,117,012 - 2,159,070 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl202,117,017 - 2,159,053 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1201,837,866 - 1,879,813 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0202,164,688 - 2,206,489 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0202,124,982 - 2,166,796 (-)NCBIUU_Cfam_GSD_1.0
Ruvbl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494220,517,860 - 20,530,840 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936798559,778 - 572,506 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936798559,706 - 572,710 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RUVBL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1372,200,511 - 72,248,582 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11372,196,219 - 72,246,514 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
RUVBL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12252,887,374 - 52,967,728 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2252,924,819 - 52,967,830 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041113,388,160 - 113,468,540 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ruvbl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624961427,836 - 460,887 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ruvbl1
60 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:35
Count of miRNA genes:29
Interacting mature miRNAs:33
Transcripts:ENSRNOT00000018339
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
61418Pia5Pristane induced arthritis QTL 54.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)462277855128289560Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
631662Hcar2Hepatocarcinoma resistance QTL 23.10.0003liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)478878504123878504Rat
738015Pia9Pristane induced arthritis QTL 94.50.048joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)480694870125694870Rat
1641919Alc22Alcohol consumption QTL 220.0005drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)481192555126192555Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
634334Xhs3X-ray hypersensitivity QTL 310intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)484728680129854654Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61476Aia3Adjuvant induced arthritis QTL 33.9joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)486730991131730991Rat
1578662Bss15Bone structure and strength QTL 1519.6femur width (VT:1000666)femoral neck width (CMO:0001695)487327165132327165Rat
1578670Bss14Bone structure and strength QTL 1416.4femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)487327165132327165Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat

Markers in Region
RH143274  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X1,640,904 - 1,641,062 (+)MAPPERmRatBN7.2
mRatBN7.24120,955,412 - 120,956,762 (+)MAPPERmRatBN7.2
Rnor_6.04120,435,471 - 120,436,820NCBIRnor6.0
Rnor_6.0X1,855,352 - 1,855,509NCBIRnor6.0
Rnor_5.04185,675,398 - 185,676,747UniSTSRnor5.0
Rnor_5.0X2,648,397 - 2,648,554UniSTSRnor5.0
RGSC_v3.44122,579,782 - 122,581,131UniSTSRGSC3.4
RGSC_v3.4X13,059,294 - 13,059,451UniSTSRGSC3.4
CeleraX2,204,819 - 2,204,976UniSTS
Celera4109,911,246 - 109,912,595UniSTS
Cytogenetic Map4q34UniSTS
Cytogenetic MapXq12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 35 57 41 19 41 4 7 74 35 41 11 4
Low 8 4 4 4
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000018339   ⟹   ENSRNOP00000018339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4120,932,422 - 121,029,384 (+)Ensembl
Rnor_6.0 Ensembl4120,412,398 - 120,447,278 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000090875   ⟹   ENSRNOP00000075190
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4120,932,417 - 121,029,384 (+)Ensembl
Rnor_6.0 Ensembl4120,411,991 - 120,447,455 (+)Ensembl
RefSeq Acc Id: NM_147177   ⟹   NP_671706
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24120,932,486 - 120,967,400 (+)NCBI
Rnor_6.04120,412,368 - 120,447,458 (+)NCBI
Rnor_5.04185,651,851 - 185,687,385 (+)NCBI
RGSC_v3.44122,556,857 - 122,591,769 (+)RGD
Celera4109,888,321 - 109,923,233 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_671706 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH72511 (Get FASTA)   NCBI Sequence Viewer  
  AAH86531 (Get FASTA)   NCBI Sequence Viewer  
  BAA20875 (Get FASTA)   NCBI Sequence Viewer  
  BAA76313 (Get FASTA)   NCBI Sequence Viewer  
  EDL91312 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000018339.4
  ENSRNOP00000075190
GenBank Protein P60123 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: NP_671706   ⟸   NM_147177
- UniProtKB: P60123 (UniProtKB/Swiss-Prot),   A6IB44 (UniProtKB/TrEMBL),   A0A8L2Q944 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000018339   ⟸   ENSRNOT00000018339
RefSeq Acc Id: ENSRNOP00000075190   ⟸   ENSRNOT00000090875
Protein Domains
AAA+ ATPase   RuvB-like AAA-lid   TIP49 P-loop

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P60123-F1-model_v2 AlphaFold P60123 1-456 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693231
Promoter ID:EPDNEW_R3756
Type:initiation region
Name:Ruvbl1_1
Description:RuvB-like AAA ATPase 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04120,412,313 - 120,412,373EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:68373 AgrOrtholog
BioCyc Gene G2FUF-43812 BioCyc
Ensembl Genes ENSRNOG00000013195 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000018339.7 UniProtKB/TrEMBL
  ENSRNOT00000090875 ENTREZGENE, UniProtKB/Swiss-Prot
Gene3D-CATH 1.10.8.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.40.50.360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.40.50.300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7104777 IMAGE-MGC_LOAD
  IMAGE:7304521 IMAGE-MGC_LOAD
InterPro AAA+_ATPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NA-bd_OB-fold UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RuvB-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RuvB-like_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RuvBL1/2_DNA/RNA_bd_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIP49_P-loop UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:65137 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105307 IMAGE-MGC_LOAD
  MGC:91456 IMAGE-MGC_LOAD
NCBI Gene 65137 ENTREZGENE
PANTHER PTHR11093 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR11093:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TIP49 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TIP49_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Ruvbl1 PhenoGen
RatGTEx ENSRNOG00000013195 RatGTEx
SMART AAA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50249 UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
TIGR TC207355
UniProt A0A8L2Q944 ENTREZGENE, UniProtKB/TrEMBL
  A6IB44 ENTREZGENE, UniProtKB/TrEMBL
  P60123 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary O35753 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-09-18 Ruvbl1  RuvB-like AAA ATPase 1  Ruvbl1  RuvB-like 1 (E. coli)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-30 Ruvbl1  RuvB-like 1 (E. coli)  Ruvbl1  RuvB-like protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Ruvbl1  ruvB-like protein 1      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_cellular_localization localizes to liver nuclear extracts 68301
gene_function binds to the TATA-binding protein (TBP), also binds plasminogen 68301
gene_function DNA helicase 729809
gene_process enhances plasminogen activation 68301
gene_process plays a role in recombination and transcription 729809