Ier3ip1-ps1 (immediate early response 3 interacting protein 1, pseudogene 1) - Rat Genome Database

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Gene: Ier3ip1-ps1 (immediate early response 3 interacting protein 1, pseudogene 1) Rattus norvegicus
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Symbol: Ier3ip1-ps1
Name: immediate early response 3 interacting protein 1, pseudogene 1
RGD ID: 1561565
Description: Predicted to be involved in several processes, including endoplasmic reticulum to Golgi vesicle-mediated transport; positive regulation of secretion by cell; and regulation of fibroblast apoptotic process. Predicted to be located in Golgi apparatus and endoplasmic reticulum. Predicted to be active in COPII-coated ER to Golgi transport vesicle and endoplasmic reticulum membrane. Orthologous to human IER3IP1 (immediate early response 3 interacting protein 1); INTERACTS WITH bisphenol A; tributylstannane; 2-hydroxypropanoic acid (ortholog).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 796; hypothetical protein LOC500270; Ier3ip1; immediate early response 3 interacting protein 1; LOC500270; uncharacterized protein LOC500270
RGD Orthologs
Human
Alliance Genes
More Info more info ...
Related Functional Gene: Ier3ip1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24132,342,131 - 132,342,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4132,332,180 - 132,342,316 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4137,748,803 - 137,759,646 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04133,529,585 - 133,540,428 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04132,147,856 - 132,158,699 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04132,140,802 - 132,152,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4132,140,802 - 132,151,740 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04196,632,040 - 196,642,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44134,544,543 - 134,555,487 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4121,190,544 - 121,201,488 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:19946888   PMID:21835305  


Genomics

Comparative Map Data
Ier3ip1-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.24132,342,131 - 132,342,625 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4132,332,180 - 132,342,316 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4137,748,803 - 137,759,646 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04133,529,585 - 133,540,428 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04132,147,856 - 132,158,699 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04132,140,802 - 132,152,059 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4132,140,802 - 132,151,740 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04196,632,040 - 196,642,981 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44134,544,543 - 134,555,487 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4121,190,544 - 121,201,488 (+)NCBICelera
Cytogenetic Map4q34NCBI
IER3IP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381847,152,834 - 47,176,364 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1847,152,834 - 47,176,364 (-)EnsemblGRCh38hg38GRCh38
GRCh371844,679,205 - 44,702,735 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361842,935,411 - 42,956,743 (-)NCBINCBI36Build 36hg18NCBI36
Build 341842,935,412 - 42,956,712NCBI
Celera1841,531,935 - 41,553,267 (-)NCBICelera
Cytogenetic Map18q21.1NCBI
HuRef1841,529,452 - 41,550,749 (-)NCBIHuRef
CHM1_11844,676,575 - 44,697,926 (-)NCBICHM1_1
T2T-CHM13v2.01847,343,146 - 47,366,670 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Ier3ip1-ps1
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:29
Count of miRNA genes:29
Interacting mature miRNAs:29
Transcripts:ENSRNOT00000050772
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)459948935154902892Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)459948935154902892Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)464528739157573521Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)470362013132642728Rat
631646Stl4Serum triglyceride level QTL 46.50.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)473169846132642728Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482798864152731274Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)485253748148090731Rat
12798523Anxrr56Anxiety related response QTL 562.830.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)485253748150276390Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
1578655Bmd11Bone mineral density QTL 1111femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)490850165135850165Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
631689Scl4Serum cholesterol level QTL 41.90.008blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)495174120140174120Rat
61434Cia3Collagen induced arthritis QTL 34.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4103194656148194656Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4105789505150789505Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4106649412151649412Rat
61406Scwia1Streptococcal cell wall induced arthritis QTL 12.3joint integrity trait (VT:0010548)experimental arthritis severity measurement (CMO:0001459)4106805662151805662Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4109827074154827074Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4109827074154827074Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4110870972155870972Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4114627026159627026Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4116179486151161268Rat
724535Cm18Cardiac mass QTL 182.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)4118856416163856416Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4119428175157578333Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4119463257147278687Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4120260281147278687Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4120926564148090731Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 2 2 9 2 14 2 6 6 7 9
Below cutoff 7 15 6 5 6 4 5 10 5 4 1 4

Sequence


RefSeq Acc Id: ENSRNOT00000050772   ⟹   ENSRNOP00000048700
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4132,332,180 - 132,342,316 (+)Ensembl
Rnor_6.0 Ensembl4132,140,802 - 132,151,740 (+)Ensembl
RefSeq Acc Id: NM_001047956   ⟹   NP_001041421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24132,331,372 - 132,342,316 (+)NCBI
Rnor_6.04132,140,802 - 132,151,743 (+)NCBI
Rnor_5.04196,632,040 - 196,642,981 (+)NCBI
RGSC_v3.44134,544,543 - 134,555,487 (+)RGD
Celera4121,190,544 - 121,201,488 (+)RGD
Sequence:
RefSeq Acc Id: XM_008763163   ⟹   XP_008761385
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.24132,331,475 - 132,342,316 (+)NCBI
Rnor_6.04132,141,537 - 132,152,059 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAP92664 (Get FASTA)   NCBI Sequence Viewer  
  EDL91439 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000048700.5
RefSeq Acc Id: NP_001041421   ⟸   NM_001047956
- Sequence:
RefSeq Acc Id: XP_008761385   ⟸   XM_008763163
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000048700   ⟸   ENSRNOT00000050772

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1561565 AgrOrtholog
BioCyc Gene G2FUF-43581 BioCyc
Ensembl Genes ENSRNOG00000030004 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050772.5 UniProtKB/TrEMBL
KEGG Report rno:500270 UniProtKB/TrEMBL
NCBI Gene 500270 ENTREZGENE
PhenoGen Ier3ip1-ps1 PhenoGen
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030004 RatGTEx
UniProt A0A9K3Y6W1_RAT UniProtKB/TrEMBL
  Q7TNZ8_RAT UniProtKB/TrEMBL
UniProt Secondary F1LMN6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-11-14 Ier3ip1-ps1  immediate early response 3 interacting protein 1, pseudogene 1  Ier3ip1  immediate early response 3 interacting protein 1  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2014-11-07 Ier3ip1  immediate early response 3 interacting protein 1  LOC500270  796  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC500270  796      Symbol and Name status set to provisional 70820 PROVISIONAL