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Gene: Efcc1 (EF-hand and coiled-coil domain containing 1) Rattus norvegicus
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Symbol: Efcc1
Name: EF-hand and coiled-coil domain containing 1
RGD ID: 1596494
Description: Predicted to have calcium ion binding activity. Predicted to localize to cytosol. Orthologous to human EFCC1 (EF-hand and coiled-coil domain containing 1); INTERACTS WITH 6-propyl-2-thiouracil; acrylamide; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: Ccdc48; Ccdc48l1; coiled-coil domain containing 48; coiled-coil domain containing 48 like; coiled-coil domain containing 48-like1; EF-hand and coiled-coil domain-containing protein 1; EF-hand domain-containing protein ENSP00000381169 homolog; hypothetical protein LOC685202; LOC685202
Orthologs:
Homo sapiens (human) : EFCC1 (EF-hand and coiled-coil domain containing 1)  HGNC  Alliance
Mus musculus (house mouse) : Efcc1 (EF hand and coiled-coil domain containing 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Efcc1 (EF-hand and coiled-coil domain containing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : EFCC1 (EF-hand and coiled-coil domain containing 1)
Canis lupus familiaris (dog) : EFCC1 (EF-hand and coiled-coil domain containing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Efcc1 (EF-hand and coiled-coil domain containing 1)
Sus scrofa (pig) : EFCC1 (EF-hand and coiled-coil domain containing 1)
Chlorocebus sabaeus (African green monkey) : EFCC1 (EF-hand and coiled-coil domain containing 1)
Heterocephalus glaber (naked mole-rat) : Efcc1 (EF-hand and coiled-coil domain containing 1)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.04119,633,214 - 119,663,081 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4119,633,755 - 119,661,004 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04184,885,715 - 184,915,192 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44121,917,925 - 121,945,822 (+)NCBIRGSC3.4rn4RGSC3.4
Celera4109,149,270 - 109,176,624 (+)NCBICelera
Cytogenetic Map4q34NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Efcc1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1596494
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.