Stl10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL: Stl10 (Serum triglyceride level QTL 10) Rattus norvegicus

Symbol: Stl10
Name: Serum triglyceride level QTL 10
RGD ID: 1354665
Trait: blood triglyceride amount   (VT:0002644)    
Measurement Type: serum triglyceride level   (CMO:0000360)    
LOD Score: 3.57
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2421,333,343 - 44,463,908RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0418,222,187 - 43,414,792RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0418,184,531 - 44,024,417RGDRnor5.0
RGSC_v3.4417,617,956 - 41,729,771RGDRGSC3.4
RGSC_v3.1417,617,956 - 41,849,418RGD
Cross Type: Not Available
Strains Crossed: OLETF F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition
fasting  (IDA)

Measurement Method

Vertebrate Trait

Rat Strain
F344/NRrrc  (IEA)
OLETF  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Serum leptin concentration is linked to chromosomes 2 and 6 in the OLETF rat, an animal model of type 2 diabetes with mild obesity. Ogino T, etal., Mamm Genome 2003 Dec;14(12):839-44.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
2481Cyp51cytochrome P450, family 5143003695630055410Rat
2506Dlx5distal-less homeobox 543499913935003504Rat
2512Dync1i1dynein cytoplasmic 1 intermediate chain 143385259734166159Rat
2744Grm3glutamate metabotropic receptor 342436485424643972Rat
69061Pdk4pyruvate dehydrogenase kinase 443359179633601798Rat
70966Dmtf1cyclin D binding myb-like transcription factor 142490993724950786Rat
3318Abcb1bATP-binding cassette, subfamily B (MDR/TAP), member 1B42524276125325194Rat
70908Crotcarnitine O-octanoyltransferase42506827025133111Rat
620062Pon1paraoxonase 143329473733325759Rat
3218Nxph1neurexophilin 143699806837311135Rat
3600Rps4x-ps9ribosomal protein S4, X-linked, pseudogene 943775837337759289Rat
3807Tac1tachykinin, precursor 143567918335687180Rat
727939Sema3dsemaphorin 3D42231676922505930Rat
621351Col1a2collagen type I alpha 2 chain43256393832598868Rat
621318Mterf1mitochondrial transcription termination factor 143022634530233402Rat
620248Abcb4ATP binding cassette subfamily B member 442515099825209489Rat
61916Fzd1frizzled class receptor 142931030329314701Rat
621001Calcrcalcitonin receptor43166127031736392Rat
2203Bet1Bet1 golgi vesicular membrane trafficking protein43211623232126592Rat
621465Ica1islet cell autoantigen 143665647536804705Rat
1307050Steap2STEAP2 metalloreductase42834776928368177Rat
619951Abcb1aATP binding cassette subfamily B member 1A42535746725529941Rat
1303037Tmem106btransmembrane protein 106B44132812541347315Rat
628629Tfpi2tissue factor pathway inhibitor 243198178631986707Rat
1302965Pon3paraoxonase 343335698333383681Rat
621105C1galt1core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 143593074335966102Rat
2162Asnsasparagine synthetase (glutamine-hydrolyzing)43578499535803474Rat
621515Gng11G protein subunit gamma 1143202300332028443Rat
620833Akap9A-kinase anchoring protein 943005673830192716Rat
1306810Rpa3replication protein A343630464936307755Rat
71011Gpr85G protein-coupled receptor 8544210013842109584Rat
621121Cdk6cyclin-dependent kinase 643063765030829688Rat
3657Sema3asemaphorin 3A42128239821754834Rat
1305854Dbf4DBF4 zinc finger42567657025701152Rat
632280Ppp1r9aprotein phosphatase 1, regulatory subunit 9A43297050133292360Rat
1305697Hepacam2HEPACAM family member 243144619531480859Rat
1305143Sdhaf3succinate dehydrogenase complex assembly factor 343514313135160416Rat
1304751Vps50VPS50 subunit of EARP/GARPII complex43148442431585617Rat
1307778Tmem168transmembrane protein 16844183062341858763Rat
1305929Krit1KRIT1, ankyrin repeat containing43029920330333366Rat
1305544Cdk14cyclin-dependent kinase 1442866668829258865Rat
1308774Slc25a40solute carrier family 25, member 4042562000725676422Rat
1305878Gtpbp10GTP binding protein 1042847685728494375Rat
1306302Fam133bfamily with sequence similarity 133, member B43058964630616291Rat
1303201Sgcesarcoglycan, epsilon43277147732842238Rat
1311543Steap1STEAP family member 142827697228287484Rat
1308432Miosmeiosis regulator for oocyte development43626341936289546Rat
1306626Tmbim7transmembrane BAX inhibitor motif containing 743046665130499565Rat
1309954Pon2paraoxonase 243338970233425186Rat
1309532MdficMyoD family inhibitor domain containing44397231044052162Rat
1564680Col28a1collagen type XXVIII alpha 1 chain43606998036223128Rat
1563091Samd9sterile alpha motif domain containing 943116463931184325Rat
1560448LOC500028hypothetical protein LOC50002843791783737918511Rat
1564798Tmem183a-ps1transmembrane protein 183A, pseudogene 142389715723898281Rat
1563349Elapor2endosome-lysosome associated apoptosis and autophagy regulator family member 242461316324805729Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44293735342980195Rat
1562351Tmem243transmembrane protein 24342495079124968642Rat
1565889Slc25a13solute carrier family 25 member 1343417922434361912Rat
1565400Actc1-ps1actin, alpha, cardiac muscle 1, pseudogene 143762082037622087Rat
1564345Tex47testis expressed 4742664409826647393Rat
1566237Rpl35-ps9ribosomal protein L35, pseudogene 943487396834874422Rat
1561836Chchd2l2-ps1coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 143251175332512295Rat
1561223Vwdevon Willebrand factor D and EGF domains44145357341525421Rat
1562992Hnrnpa1-ps33heterogeneous nuclear ribonucleoprotein A1, pseudogene 3343093491530936057Rat
1563764Phf14PHD finger protein 1444000969140195870Rat
1560872RGD1560872similar to interferon induced transmembrane protein 2 (1-8D)43096084530961278Rat
1561053Cldn12claudin 1242852265928533647Rat
1559912Ckap2-ps1cytoskeleton-associated protein 2, pseudogene 143295899232961061Rat
1561882LOC287992hypothetical LOC28799242345689423501158Rat
1562004Gatad1GATA zinc finger domain containing 143050753030519109Rat
1559697Foxp2forkhead box P244313382743712442Rat
1310794Rbm48RNA binding motif protein 4843055906330569409Rat
1559939Pex1peroxisomal biogenesis factor 143051995030558953Rat
1560331Steap4STEAP4 metalloreductase42607718226099859Rat
1566201Thsd7athrombospondin type 1 domain containing 7A44046112440899345Rat
1584485Srisorcin42597349325997879Rat
1584730Stmnl-ps2stathmin like, pseudogene 243976968439770132Rat
1585861Nsa2-ps9NSA2 ribosome biogenesis factor, pseudogene 943756118837561974Rat
1584719Ndufa4Ndufa4, mitochondrial complex associated44000221640009384Rat
1585845Rbmxl1bRbmx like 1B44395626543957973Rat
1587590Rundc3bRUN domain containing 3B42546254325599477Rat
1585825LOC680964similar to high mobility group nucleosomal binding domain 143860485638606026Rat
1563612Glcci1glucocorticoid induced 143630795636635614Rat
1561754RGD1561754similar to high mobility group protein homolog HMG442789164327892122Rat
1563114Asb4ankyrin repeat and SOCS box-containing 443350699233544630Rat
1562636RGD1562636similar to protein phosphatase 1, regulatory (inhibitor) subunit 3B42376587423768883Rat
1564521Tas2r7ltaste receptor type 2 member 7-like44156953641570447Rat
1565361Golga3-ps1golgin A3, pseudogene 143108092331085695Rat
1562387Gtpbp4-ps3GTP binding protein 4, pseudogene 343939107939425066Rat
1562531Samd9lsterile alpha motif domain containing 9-like43136205431376412Rat
1583532Gnpnat1-ps1glucosamine-phosphate N-acetyltransferase 1, pseudogene 144154887241549774Rat
1564656LOC500035hypothetical protein LOC50003544197006441978344Rat
1561539Dlx6distal-less homeobox 643498426434989926Rat
1589637Psme2-ps2proteasome activator subunit 2, pseudogene 242772478627725601Rat
1589639Cd2ap-ps1CD2-associated protein, pseudogene 142719800627200492Rat
1589640Zfp804bzinc finger protein 804B42660851027144717Rat
1591728Vil1-ps1villin 1, pseudogene 143357586133580483Rat
1585016Adam22ADAM metallopeptidase domain 2242571605525970932Rat
1588441Bmt2base methyltransferase of 25S rRNA 2 homolog44188163041945472Rat
1588445LOC500007similar to EF hand calcium binding domain 143056904530589503Rat
1587202Pkm-ps19pyruvate kinase M1/2, pseudogene 1944115613841277227Rat
1562785Lrrd1leucine-rich repeats and death domain containing 143026314730293119Rat
1590628Sem1SEM1 26S proteasome subunit43467184834692005Rat
1597981Hnrnpa1-ps53heterogeneous nuclear ribonucleoprotein A1, pseudogene 5344246088042461983Rat
1595475Gngt1G protein subunit gamma transducin 143200626732009252Rat
1595574Peg10paternally expressed 1043284239432855641Rat
1597088Ankib1ankyrin repeat and IBR domain containing 143033367830457781Rat
1596912Casd1CAS1 domain containing 143265888832739224Rat
1589400Rps25-ps4ribosomal protein S25, pseudogene 443527172035272156Rat
2314881Mir653microRNA 65343169271431692810Rat
2314886Mir489microRNA 48943169335531693460Rat
2322154Psma6-ps3proteasome 20S subunit alpha 6, pseudogene 343919157039192321Rat
2322826LOC100363521hypothetical LOC10036352144214169642143340Rat
2322347Tomm20-ps2translocase of outer mitochondrial membrane 20, pseudogene 243801322738013802Rat
2323113Bcl2l2-ps2Bcl2-like 2, pseudogene 243114616431148432Rat
2323518Mterf1-ps2mitochondrial transcription termination factor 1, pseudogene 242991257629913741Rat
2323857Plscr2-ps1phospholipid scramblase 2, pseudogene 144223615742358953Rat
2325362Mir879microRNA 87942472445524724530Rat
2323949Psma2-ps1proteasome 20S subunit alpha 2, pseudogene 142783744727838144Rat
2324789Mterf1-ps1mitochondrial transcription termination factor 1, pseudogene 142988661129887781Rat
6488535LOC100912227uncharacterized LOC10091222743494327134993044Rat
6492128Rps6-ps11ribosomal protein S6, pseudogene 1142409335324096338Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44182887341829619Rat
6494620Zc3hav1-ps7zinc finger CCCH-type containing, antiviral 1, pseudogene 743108849231090178Rat
6496360Cfap69cilia and flagella associated protein 6942837960428452562Rat
7526246LOC102550307uncharacterized LOC10255030743601868036040591Rat
7536117LOC102555663uncharacterized LOC10255566342480591224807670Rat
7624497LOC102553320uncharacterized LOC10255332042359296423661292Rat
7641224Rps2-ps40ribosomal protein S2, pseudogene 4044068219240683121Rat
7657264LOC102554854uncharacterized LOC10255485443441491134438788Rat
7609534LOC102548489uncharacterized LOC10254848944169446041701116Rat
7661902LOC102557375uncharacterized LOC10255737543245489832457445Rat
7572472LOC102552043uncharacterized LOC10255204343264282332644911Rat
7596691LOC102547989uncharacterized LOC10254798943959860439678420Rat
7573585LOC102549548uncharacterized LOC10254954842906776129096268Rat
7545679Lyrm4-ps1LYR motif containing 4, pseudogene 144187003941878699Rat
7584396LOC102552448uncharacterized LOC10255244843358265233589860Rat
7715339LOC102550643uncharacterized LOC10255064343678088436787735Rat
7734714LOC102549955uncharacterized LOC10254995542721068227262917Rat
7747029Samd9l-ps2sterile alpha motif domain containing 9-like, pseudogene 243120032731216722Rat
7727723Dnd1-ps2DND microRNA-mediated repression inhibitor 1, pseudogene 243041499030418462Rat
9213284Samd9l-ps1sterile alpha motif domain containing 9-like, pseudogene 143126795031333461Rat
9197484LOC103692044mitochondrial import inner membrane translocase subunit Tim8 A pseudogene42428942924289895Rat
9118001Pttg1ip2PTTG1IP family member 242856106328585400Rat
9229365LOC103692052uncharacterized LOC10369205243443911634447138Rat
9319274LOC103692071disks large homolog 5-like42997932029986368Rat
9376829LOC103692067protein LLP homolog pseudogene43429933134305057Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene44072136940732042Rat
9388809Polr1d-ps1RNA polymerase I and III subunit D, pseudogene 143592757835928571Rat
11356515LOC108350668uncharacterized LOC10835066843090631330909925Rat
11367620LOC108350659uncharacterized LOC10835065942495687624966778Rat
11462374LOC108350658uncharacterized LOC10835065842477957124794265Rat
11435887LOC10835085260S ribosomal protein L29 pseudogene43366405033666091Rat
11363596LOC108350856uncharacterized LOC10835085644093701340945223Rat
11431277LOC10835067160S ribosomal protein L31 pseudogene43430256234310161Rat
11453897LOC108350853uncharacterized LOC10835085343529687035304056Rat
11407309LOC108350669uncharacterized LOC10835066943205605032112584Rat
11390963LOC108351144uncharacterized LOC10835114442992256529975375Rat
11516558LOC10835085540S ribosomal protein S23 pseudogene43826319438263628Rat
11517003LOC108350663uncharacterized LOC10835066342856196828575524Rat
41320971LOC120102218uncharacterized LOC12010221842209288522119273Rat
41140158LOC120102687small nucleolar RNA SNORA1744030905740309173Rat
41114928Ewsr1-ps6EWS RNA-binding protein 642752623327528198Rat
41286244LOC120102221uncharacterized LOC12010222142517166925175960Rat
41118809LOC120102219uncharacterized LOC12010221942499381825003812Rat
41390098LOC120102572U6 spliceosomal RNA42944279329442899Rat
41148263LOC120102562U6 spliceosomal RNA43421018434210290Rat
41211262LOC120102776U4 spliceosomal RNA43469280334692885Rat
41392109LOC120102745U1 spliceosomal RNA42794600627946166Rat
41212670Eif3k-ps1eukaryotic translation initiation factor 3, subunit K, pseudogene 142501206425012685Rat
41264909LOC120102634small nucleolar RNA SNORA4444186943541869561Rat
41122445LOC120102236uncharacterized LOC12010223644016991540171995Rat
41397044Set-ps6Set nuclear proto-oncogene, pseudogene 643574428035747371Rat
41291133LOC120102511uncharacterized LOC12010251144160833041656692Rat
41220038Fam237bfamily with sequence similarity 237 member B42845740228458728Rat
41129509Rnu2-34RNA, U2 small nuclear 3442661716926617247Rat
41230048LOC120102706small nucleolar RNA SNORA1744239883242398962Rat
41374934Fabp3-ps1fatty acid binding protein 3, pseudogene 144218552542189209Rat
41375555LOC120102231uncharacterized LOC12010223143459265234594248Rat
41107770LOC120102227uncharacterized LOC12010222742958142329591564Rat
41165065NEWGENE_40926764transfer RNA proline (anticodon AGG)42578050525780585Rat
41202184LOC120102233uncharacterized LOC12010223343578016035783088Rat
41233092LOC120102224uncharacterized LOC12010222442837771928379631Rat
40945863Rpl7-ps21ribosomal protein L7, pseudogene 2143038981130390201Rat
40971411LOC120102154uncharacterized LOC12010215443864163538646263Rat
40946680Rps15a-ps6ribosomal protein S15a, pseudogene 642882455328832585Rat
41011912LOC120102753U2 spliceosomal RNA44418613544186318Rat
41340251Ranbp1-ps1RAN binding protein 1, pseudogene 142646895426472445Rat
40975034LOC120102559U4 spliceosomal RNA43292226032922342Rat
40976402LOC120102629small nucleolar RNA SNORA3/SNORA45 family43596972735969848Rat
40955874LOC120102571U6 spliceosomal RNA42296828522968392Rat
40982246LOC120102694small nucleolar RNA SNORA1743973394139734060Rat
41002968LOC120102235uncharacterized LOC12010223544011938740123944Rat
41047811C1h11orf98-ps2similar to human chromosome 11 open reading frame 98, pseudogene 242517472725175091Rat
41027801LOC120102734U1 spliceosomal RNA42915731229157442Rat
41248065LOC120102234uncharacterized LOC12010223443890194838907419Rat
41319059LOC120102653small nucleolar RNA SNORA4843748469037484833Rat
41054814Envl-ps4MLV-related proviral Env polyprotein-like, pseudogene 442298847722990225Rat
41258698LOC120102775U4 spliceosomal RNA42661813426618285Rat
41222673LOC120102222uncharacterized LOC12010222242524540025250299Rat
41033620LOC120102229uncharacterized LOC12010222943082950730936497Rat
41334218LOC120102603U6 spliceosomal RNA42495272424952824Rat
41303418LOC120102627small nucleolar RNA SNORA3142308406723084203Rat
41303543LOC120102223uncharacterized LOC12010222342582169625835920Rat
41065803LOC120102155uncharacterized LOC12010215544198883241995216Rat
41017590Rnu6-210RNA, U6 small nuclear 21044272163142721733Rat
41041657LOC120102230sterile alpha motif domain-containing protein 9-like43132004031333472Rat
41305886Akr1c2-ps1aldo-keto reductase family 1, member C2, pseudogene 143460852234616239Rat
41019115LOC120102226uncharacterized LOC12010222642933283229340185Rat
41240640LOC120102760U2 spliceosomal RNA42637529726375438Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34200D4Mgh114442133334321333491Ratregion
34238D4Mgh225043952426439524530Ratregion
34423D4Mgh2619043153230431532516Ratregion
34716D4Mgh1413343950527539505420Ratregion
36037D4Rat1313944199617341996312Ratregion
36127D4Rat917242690728526907447Ratregion
37752D4Rat8918343644394736444128Ratregion
37948D4Rat10016843522511535225281Ratregion
35160D4Rat1113143640514636405277Ratregion
35625D4Rat1417944446372044463908Ratregion
35847D4Rat1214643846577438465927Ratregion
35913D4Rat1016842959328729593455Ratregion
39688D4Rat21110644019349640193597Ratregion
39704D4Rat22222442271068522710908Ratregion
38440D8Rat10921743438534834385554Ratregion
38628D4Rat13022243865742738657645Ratregion
40162D4Rat21012543464711334647234Ratregion
38908D4Rat12613542949419529494328Ratregion
39194D4Rat11524043717795037178180Ratregion
42156D4Arb2532043443011934430484Ratregion
42158D4Arb2613043950527539505418Ratregion
41202D4Rat15219744078009840780283Ratregion
42689D4Rat25120142284320422843398Ratregion
42690D4Rat25222543630326136303483Ratregion
42691D4Rat22321243884718238847397Ratregion
42691D4Rat22321243884718238847569Ratregion
41102D4Rat15123543258398032584199Ratregion
41888D4Rat28224544086875240869000Ratregion
43782D4Got2017943854696138547140Ratregion
43783D4Got2116643723314237233308Ratregion
43784D4Got15714743773361237733759Ratregion
43786D4Got2423943831722238317461Ratregion
43787D4Got2517643896180238961978Ratregion
43788D4Got2724744246796842468215Ratregion
60433D4Got1926743644075636441020Ratregion
60435D4Got229043687397336874063Ratregion
60436D4Got2629844019331240193610Ratregion
625773D4Got2317343854696938547140Ratregion
67352D4Arb1717443775307137753245Ratregion
67353D4Arb1830242280936322809665Ratregion
1358007D16Chm7815842636671126366820Ratregion
1630504D4Wox5319842535758425357782Ratregion
1631920D4Got28114543346231433462458Ratregion
1631954D4Got28928142420136824201649Ratregion
1627175D4Uia1043928891439289215Ratregion
1627844D4Got28222342780898627809209Ratregion
1629143D4Wox3215542250627722506432Ratregion
1629639D4Got20117642483400924834180Ratregion
1641681D4Got20522243675010136750323Ratregion
1640436D4Got30226642572784125728107Ratregion
1640737D4Got30727443147037731470649Ratregion
1634999D4Got28322642825234628252572Ratregion
1635808D4Got20218342157490121575084Ratregion
1635857D4Got25217042608089626081067Ratregion
1636092D4Got27822142941620429416425Ratregion
1636261D4Got28621243304435733044568Ratregion
1636357D4Got26519143464295934643150Ratregion
1636460D4Got28417043002924730029419Ratregion
1637051D4Ulb317442488289124883065Ratregion
1637341D4Got24827742969707729697349Ratregion
1637821D4Got20415042710022527100375Ratregion
1638224D4Got29226643338273033382996Ratregion
1638305D4Got28515143155157231551723Ratregion
1638383D4Got30616042221757022217730Ratregion
1632459D4Got27615143516722435167370Ratregion
1632475D4Got29516642187376721873935Ratregion
1633717D4Got25516142437029024370451Ratregion
1634118D4Got28711442502054025020656Ratregion
1634619D4Got25013944276291542763049Ratregion
7193111Col1a216743256383732564004Ratregion
7241149D4Kini328043102124831021530Ratregion
7241151D4Kini428543148275031483035Ratregion
7241153D4Kini517243155157931551751Ratregion
7241155D4Kini614143163163031631771Ratregion
7241157D4Kini721443172260531722819Ratregion
7241159D4Kini820643199788931998095Ratregion
7241161D4Kini920943202271532022924Ratregion
7241163D4Kini1033243210290532103237Ratregion
7241165D4Kini1143211205832112354Ratregion
7241167D4Kini1229643239799732398293Ratregion
7241169D4Kini1327143375719333757466Ratregion
7241171D4Kini1419442535331625353510Ratregion
7241173D4Kini1523842515516325155403Ratregion
7241175D4Kini1621242689607826896290Ratregion
7241177D4Kini1723242773266327732895Ratregion
7193020Dlx541643499918234999598Ratregion
7193021Dlx56543500316335003228Ratregion
7206264Adam2233342589711225897445Ratregion
5038824RH12735421743329487433295091Ratregion
5038914RH12740518543335700833357193Ratregion
5038996RH12745318843136208631362274Ratregion
5037197RH9182019243498961734989809Ratregion
5035623WI-1802712542460944824609573Ratregion
5025984RH13045718344405177444051957Ratregion
7206128UniSTS:53217111443320470533204819Ratregion
5031516AU04807115244137361441373766Ratregion
5034091RH14133018843285371332853901Ratregion
5034343SGC3451213442465233024652466Ratregion
5026500RH13245119143259860832598800Ratregion
5029141RH14367412443312854133128665Ratregion
5029713AI55545118743052189530522341Ratregion
5032631RH13471919142597360325973794Ratregion
5032675RH13488020143052005030520251Ratregion
5034960AA80102116443334803433348198Ratregion
5027287AW22754814642931406329314209Ratregion
5027311AV0059169543358994233590037Ratregion
5032843RH13669824942928429429284547Ratregion
5035282BF38772015244042285340423004Ratregion
5032955RH13709418143494757434947755Ratregion
5033093RH13756619543647304736473242Ratregion
5025240RH12755618242836796028368142Ratregion
502783306.MHAa81T_M13Rev.seq14043033158430331724Ratregion
5025312RH12783621844214200542142223Ratregion
5033503RH13906619642563161225631808Ratregion
5033807RH14019420243059004430590246Ratregion
5025806RH12974919842356110323561301Ratregion
5051188RH13449020243354609933546301Ratregion
5054585RH14330929444045571040456004Ratregion
5059420AW53066815143326006133260212Ratregion
5054749RH14340314943285230232852451Ratregion
5058554BF39327824043327976133280001Ratregion
5058594BE10213915742461735024617507Ratregion
5055831RH14402713142460961024609741Ratregion
5055125RH14362017043279601832796188Ratregion
5058938BF39384114242567222225672364Ratregion
5052935RH14235916844183074041830908Ratregion
5053063RH14243223942513272425132963Ratregion
5049986RH13379619742507611025076307Ratregion
5049986RH13379619742509369225093889Ratregion
5058368BF41976518743673886836739055Ratregion
5052450Z3155712742344079323440920Ratregion
5054027RH14298813343354541933545552Ratregion
5051407AI38575210243499939734999499Ratregion
5054343RH14317019143030472630304917Ratregion
5054487RH14325318042597361625973796Ratregion
5053211RH14251715542991617529916330Ratregion
5053289RH14256223242583909225839324Ratregion
5050890RH13431719943338984133390041Ratregion
5043304RH12994916543578574535785910Ratregion
5045392RH13115218443054744630547630Ratregion
5044274RH13050818142853327728533458Ratregion
5044664RH13073320943198191431982123Ratregion
5046418RH13174119642845223628452432Ratregion
5047574RH13240619742844985828450603Ratregion
5045002RH13092719543418016734180571Ratregion
5045212RH13104818944404993944050128Ratregion
5048994RH13322521943202813132028350Ratregion
5047746RH13250520043607007436070274Ratregion
5049108RH13329021242851558928515801Ratregion
5049168RH13332419043259910532599295Ratregion
5041990RH12917521043647425836474468Ratregion
5042012RH12918819643051967430519870Ratregion
5047396RH13230318142850371128503892Ratregion
5049654RH13360521843016160130161819Ratregion
5040206RH12815020343202716532027368Ratregion
5042934RH12973119443063861230638806Ratregion
5039410RH12769019543158535331585548Ratregion
5042086RH12923118542835882128359006Ratregion
5042188RH12929118343005520030055383Ratregion
5039852RH12794421042607730826077518Ratregion
5042484RH12946118043358998833590168Ratregion
5042684RH12958221844183065741830875Ratregion
5041128RH12867820443516051435160718Ratregion
5043730RH13019418643063774830637934Ratregion
5043806RH13023819943247180032471999Ratregion
5041326RH12879318244183058041830762Ratregion
5041456RH12886718743005519130055378Ratregion
5072032RH13542518544134566041345845Ratregion
5075682RH13873524043284935332849593Ratregion
5074222RH13789222542573763325737858Ratregion
5074622RH13812321642493260424932820Ratregion
5076982RH13949119243056896530569157Ratregion
5077036RH13952222043329191433292134Ratregion
5077246RH13964618242495101824951200Ratregion
5076166RH13901714342597483125974974Ratregion
5077468RH13977418743596573135965918Ratregion
5077590RH13984420744294128342941489Ratregion
5079806RH14121418043005431330054493Ratregion
5078408RH14032519042559922225599412Ratregion
5078586RH14042912243329211633292238Ratregion
5079068RH14071715443108099231081146Ratregion
5073148RH13726618143005468730054868Ratregion
5079270RH14088420143516051435160715Ratregion
5080380RH14154620843064502630645235Ratregion
5073408RH13741921244210347342103685Ratregion
5080406RH14156118442492530624925490Ratregion
5073784RH13763624842492342224923670Ratregion
5073816RH13765513442853571528535849Ratregion
5073896RH13770121442594821625948430Ratregion
5071908RH13535419144015848840158679Ratregion
5073600RH13753020843059066830590876Ratregion
5061744BF40286713944359936643599506Ratregion
5066604AU04825920244342807743428279Ratregion
5066768AU04816217744094735740947534Ratregion
5067926AU04745311742999081229990929Ratregion
5068082AU04735814942629009626290245Ratregion
5068332AU04721016842710021027100378Ratregion
5068462AU04713019644085057940850773Ratregion
5068546AU04708123944392530943925548Ratregion
5069236AU04663019644199616441996360Ratregion
5061882AW53398816244297937742979539Ratregion
5065398BE11532916842461458824614756Ratregion
5064052BE12056815144076225440762405Ratregion
5063728BF40484115542598441025984565Ratregion
5060546BE11030918344371069243710875Ratregion
5064674BF39954820044063049440630695Ratregion
5066388AU04838617244397204843972220Ratregion
5064800BF40510024943494352334943772Ratregion
5082091BF40943015443467564934675803Ratregion
5082127AW25190013844187895641879091Ratregion
5087406Col1a219343259721332598399Ratregion
5083327BF4178639943699676836996867Ratregion
5084974AA80037116443678874836788912Ratregion
5081268RH14206220042560775525607955Ratregion
5081364AA95788918342835855228358735Ratregion
5084698AI1706789744294041142940508Ratregion
5084852AI17943218843258469732584884Ratregion
5086741AA81844618543158519531585380Ratregion
5086793AA89264511543628933936289454Ratregion
5086833AA81920719143259733732598521Ratregion
5502868Dlx555143499926234999813Ratregion
5507437REN10325625144367232243672573Ratregion
5507439REN10328524644367896343679209Ratregion
5507441REN10328625144367917743679428Ratregion
5507443REN10341323444370637243706606Ratregion
5507445REN10341424644370655343706799Ratregion
5507447REN10340825244370523443705486Ratregion
5507449REN10342325044370841543708665Ratregion
5507451REN10342226644370815243708418Ratregion
5507453REN10342522044370887443709094Ratregion
5507455REN10342426044370863843708898Ratregion
5507457REN10342825344370952043709773Ratregion
5507459REN10342725344370929243709545Ratregion
5507461REN10343124944371029043710539Ratregion
5507463REN10343324844371068843710936Ratregion
5507465REN10364425744375707043757327Ratregion
5507467REN10364924144375826343758504Ratregion
5507469REN10365025544375845643758711Ratregion
5507471REN10371124844377273843772986Ratregion
5507473REN10371225144377297043773221Ratregion
5507475REN10401126144382901643829277Ratregion
5507477REN10544323144420869544208926Ratregion
5507481ECD0408080044346120243462003Ratregion
5507485ECD0461276844345295743453725Ratregion
5507493ECD0608672144375721943757940Ratregion
5507497ECD0669371044364569543646405Ratregion
5507517REN11009122642917747829177704Ratregion
5507519REN11014623742918987729190114Ratregion
5507521REN11045226742925064029250907Ratregion
5507523REN11045324442925089529251139Ratregion
5503402GDB:131729821543459982034600035Ratregion
5503766STS_ADH227543762119337621465Ratregion
5506354UniSTS:47894812943762091737621046Ratregion
5506630ECD0020294644367803743678983Ratregion
5506636ECD0036191244368001243680924Ratregion
5506652ECD0129888444367903043679914Ratregion
5506658ECD0201295642882818928829145Ratregion
5506851G4647028943117181631172105Ratregion
5506606DLX5_231669343499909334999786Ratregion
5506666ECD0285785144370804743708898Ratregion
5506668ECD0361280344345036943451172Ratregion
5507393REN10220126244344959643449858Ratregion
5507405REN10221325644345247943452735Ratregion
5507413REN10223926244345832043458582Ratregion
5507415REN10225625044346192143462171Ratregion
5507417REN10227722944346671443466943Ratregion
5507419REN10227823644346691943467155Ratregion
5507115UniSTS:22458912642149344921493575Ratregion
5507315G4471411443628866136288775Ratregion
5499533stSG61151824444370522043705464Ratregion
5499535stSG611519123744370546943706706Ratregion
5499537stSG611520143644370668643708122Ratregion
5499531stSG611494109844367904443680142Ratregion
5499543AI85403213242597053825970670Ratregion
5500019UniSTS:23617110842947022629470334Ratregion
5499529stSG611484125844366756343668821Ratregion
5500242U6688866443316283533163499Ratregion
5500294D20S10048943663525836635347Ratregion
5500310GDB:1803505443258948532590378Ratregion
5500410GDB:5429059543357592433576019Ratregion
5500180MT348240144445596244456363Ratregion
5500336GDB:19474862143775860837759229Ratregion
5500340GDB:19474713143775909837759229Ratregion
5500701RH7977923243663327236633504Ratregion
5500945MARC_9717-9718:996688547:130943500291635003225Ratregion
5501319ECD1552447444432155944322033Ratregion
5501321ECD1582047444414700944147483Ratregion
5501679UniSTS:26567729344182910041829392Ratregion
5501818MARC_13931-13932:1007579490:149044371020443710694Ratregion
5505883Grm36542436503124365096Ratregion
5502684Asb413143351505733515188Ratregion
5507387REN10186024844339051643390764Ratregion
5507389REN10185626844338968343389951Ratregion
5507391REN10219422544344800643448231Ratregion
5507395REN10220225144344983443450085Ratregion
5507397REN102203044345005743450379Ratregion
5507399REN10220424944345037343450622Ratregion
5507401REN10220830344345127943451582Ratregion
5507403REN10221426444345271243452976Ratregion
5507407REN10221524244345295843453200Ratregion
5507409REN10221825844345359043453848Ratregion
5507411REN10221924444345382943454073Ratregion
5507421REN10258525144352484743525098Ratregion
5507423REN10287525144358848343588734Ratregion
5507425REN10311824244363820543638447Ratregion
5507427REN10315624444364621043646454Ratregion
5507429REN10323824744366816843668415Ratregion
5507431REN10324024944366862143668870Ratregion
5507433REN10326625544367449243674747Ratregion
5507435REN10326524144367425543674496Ratregion
5502864Dlx6043498845234989250Ratregion
Position Markers

Flank 1: (D4Mgh1)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2421,333,343 - 21,333,491 (+)MAPPER
Rnor_6.0418,222,187 - 18,222,332NCBI
Rnor_5.0418,184,531 - 18,184,676UniSTS
RGSC_v3.4417,617,956 - 17,618,102RGD
RGSC_v3.4417,617,957 - 17,618,102UniSTS
RGSC_v3.1417,617,956 - 17,618,102RGD
Celera416,853,169 - 16,853,313UniSTS
RH 3.4 Map4588.2UniSTS
RH 3.4 Map4588.2RGD
Cytogenetic Map4q12UniSTS
Flank 2: (D4Rat14)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2444,463,720 - 44,463,908 (+)MAPPER
Rnor_6.0443,414,605 - 43,414,792NCBI
Rnor_5.0444,024,230 - 44,024,417UniSTS
RGSC_v3.4441,729,583 - 41,729,771RGD
RGSC_v3.4441,729,584 - 41,729,771UniSTS
RGSC_v3.1441,849,231 - 41,849,418RGD
Celera439,774,296 - 39,774,481UniSTS
RH 3.4 Map4268.2UniSTS
RH 3.4 Map4268.2RGD
RH 2.0 Map4326.6RGD
SHRSP x BN Map427.24RGD
FHH x ACI Map427.69RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Stl10

RGD Curation Notes
Note Type Note Reference
qtl_general suggestive linkage; threshold for significant linkage was set at LOD=4.3 737686