Stl10 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Stl10 (Serum triglyceride level QTL 10) Rattus norvegicus

Symbol: Stl10
Name: Serum triglyceride level QTL 10
RGD ID: 1354665
Trait: blood triglyceride amount   (VT:0002644)    
Measurement Type: serum triglyceride level   (CMO:0000360)    
LOD Score: 3.57
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8422,288,453 - 45,429,897RGD_MAPPER_PIPELINE
mRatBN7.2421,333,343 - 44,463,908RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0418,222,187 - 43,414,792RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0418,184,531 - 44,024,417RGDRnor5.0
RGSC_v3.4417,617,956 - 41,729,771RGDRGSC3.4
RGSC_v3.1417,617,956 - 41,849,418RGD
Cross Type: Not Available
Strains Crossed: OLETF F344/NRrrc 
JBrowse: View Region in Genome Browser (JBrowse)
Model




  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl10RatHypertriglyceridemia  IAGP 737686 RGD 

Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl10Ratincreased circulating triglyceride level  IAGP 737686 RGD 

Clinical Measurement
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl10Ratserum triglyceride level  IDA 737686 RGD 

Experimental Condition
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl10Ratfasting  IDA 737686 RGD 

Measurement Method
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl10Ratliquid phase colorimetry  IDA 737686 RGD 

Rat Strain
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl10RatF344/NRrrc  IEA 737686 RGD 
Stl10RatOLETF  IEA 737686 RGD 

Vertebrate Trait
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Stl10Ratblood triglyceride amount  IDA 737686 RGD 


#
Reference Title
Reference Citation
1. Serum leptin concentration is linked to chromosomes 2 and 6 in the OLETF rat, an animal model of type 2 diabetes with mild obesity. Ogino T, etal., Mamm Genome 2003 Dec;14(12):839-44.


1 to 20 of 195 rows
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
3657Sema3asemaphorin 3A42128239821754834Rat
41320971LOC120102218uncharacterized LOC12010221842209288522119273Rat
727939Sema3dsemaphorin 3D42231676922505930Rat
40955874LOC120102571U6 spliceosomal RNA42296828522968392Rat
41054814Envl-ps4MLV-related proviral Env polyprotein-like, pseudogene 442298847722990225Rat
41303418LOC120102627small nucleolar RNA SNORA3142308406723084203Rat
7624497LOC102553320uncharacterized LOC10255332042359296423661292Rat
1562636Ppp1r3bl1protein phosphatase 1, regulatory subunit 3B like 142376587423768883Rat
1564798Tmem183a-ps1transmembrane protein 183A, pseudogene 142389715723898281Rat
6492128Rps6-ps11ribosomal protein S6, pseudogene 1142409335324096338Rat
9197484LOC103692044mitochondrial import inner membrane translocase subunit Tim8 A pseudogene42428942924289895Rat
2744Grm3glutamate metabotropic receptor 342436485424643972Rat
1563349Elapor2endosome-lysosome associated apoptosis and autophagy regulator family member 242461316324805729Rat
2325362Mir879microRNA 87942472445524724530Rat
11462374LOC108350658uncharacterized LOC10835065842477957124794265Rat
7536117LOC102555663uncharacterized LOC10255566342480591224807670Rat
70966Dmtf1cyclin D binding myb-like transcription factor 142490993724950786Rat
1562351Tmem243transmembrane protein 24342495079124968642Rat
41334218LOC120102603U6 spliceosomal RNA42495272424952824Rat
41118809LOC120102219uncharacterized LOC12010221942499381825003812Rat

1 to 20 of 195 rows
1 to 20 of 313 rows
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Expected Size
Chr
Start
Stop
Species
Match
34200D4Mgh114642133334321333491Ratregion
34238D4Mgh226643952426439524530Ratregion
34423D4Mgh2621243153230431532516Ratregion
34716D4Mgh1414543950527539505420Ratregion
36037D4Rat1313944199617341996312Ratregion
36127D4Rat916242690728526907447Ratregion
37752D4Rat8918143644394736444128Ratregion
37948D4Rat10016643522511535225281Ratregion
35160D4Rat1113143640514636405277Ratregion
35625D4Rat1418844446372044463908Ratregion
35847D4Rat1215343846577438465927Ratregion
35913D4Rat1016842959328729593455Ratregion
39688D4Rat21110644019349640193597Ratregion
39704D4Rat22222442271068522710908Ratregion
38440D8Rat10920643438534834385554Ratregion
38628D4Rat13022243865742738657645Ratregion
40162D4Rat21012543464711334647234Ratregion
38908D4Rat12613342949419529494328Ratregion
39194D4Rat11523043717795037178180Ratregion
42156D4Arb2536143443011934430484Ratregion
1 to 20 of 313 rows

Flank 1: (D4Mgh1)
Rat AssemblyChrPosition (strand)Source
GRCr8422,288,453 - 22,288,599 (+)Marker Load Pipeline
mRatBN7.2421,333,343 - 21,333,491 (+)MAPPER
Rnor_6.0418,222,187 - 18,222,332NCBI
Rnor_5.0418,184,531 - 18,184,676UniSTS
RGSC_v3.4417,617,956 - 17,618,102RGD
RGSC_v3.4417,617,957 - 17,618,102UniSTS
RGSC_v3.1417,617,956 - 17,618,102RGD
Celera416,853,169 - 16,853,313UniSTS
RH 3.4 Map4588.2RGD
RH 3.4 Map4588.2UniSTS
Cytogenetic Map4q12UniSTS
Flank 2: (D4Rat14)
Rat AssemblyChrPosition (strand)Source
GRCr8445,429,709 - 45,429,897 (+)Marker Load Pipeline
mRatBN7.2444,463,720 - 44,463,908 (+)MAPPER
Rnor_6.0443,414,605 - 43,414,792NCBI
Rnor_5.0444,024,230 - 44,024,417UniSTS
RGSC_v3.4441,729,584 - 41,729,771UniSTS
RGSC_v3.4441,729,583 - 41,729,771RGD
RGSC_v3.1441,849,231 - 41,849,418RGD
Celera439,774,296 - 39,774,481UniSTS
RH 3.4 Map4268.2UniSTS
RH 3.4 Map4268.2RGD
RH 2.0 Map4326.6RGD
SHRSP x BN Map427.24RGD
FHH x ACI Map427.69RGD


1 to 10 of 61 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat

1 to 10 of 61 rows


Database
Acc Id
Source(s)
NCBI Gene Stl10

Note Type Note Reference
qtl_general suggestive linkage; threshold for significant linkage was set at LOD=4.3 737686