D4Rat151 Marker Search Result - Rat Genome Database

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Marker: D4Rat151

Symbol: D4Rat151
Previously known as: oxsts10873; R0111-A10; 
RGD ID: 41102
Expected Size: 219 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8433,538,597 - 33,538,816 (+)Marker Load Pipeline
mRatBN7.2432,583,980 - 32,584,199 (+)MAPPERmRatBN7.2
Rnor_6.0431,554,266 - 31,554,484NCBIRnor6.0
Rnor_6.0429,549,895 - 29,550,113NCBIRnor6.0
Rnor_5.0431,425,294 - 31,425,512UniSTSRnor5.0
Rnor_5.0429,463,219 - 29,463,437UniSTSRnor5.0
RGSC_v3.4429,413,655 - 29,414,068RGDRGSC3.4
RGSC_v3.4429,413,686 - 29,413,904UniSTSRGSC3.4
RGSC_v3.1429,452,129 - 29,452,347RGD
Celera427,967,860 - 27,968,078UniSTS
RH 3.4 Map4449.82UniSTS
RH 3.4 Map4449.82RGD
RH 2.0 Map4215.3RGD
SHRSP x BN Map417.0799RGD
Cytogenetic Map4q13UniSTS
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  
QTLs:   Hcar13   Anxrr35   Anxrr47   Anxrr48   Bw155   Scort17   Pigfal3   Niddm71   Anxrr55  
Genes:   Col1a2   LOC100911218  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. High-density rat radiation hybrid maps containing over 24,000 SSLPs, genes, and ESTs provide a direct link to the rat genome sequence. Kwitek AE, etal., Genome Res. 2004 Apr;14(4):750-7
3. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
4. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
5. UniSTS Pipeline RGD automated pipelines
6. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
7. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer TCAAAGGGTAGATGATGGAGTTT
Reverse Primer GGTGCAAATTCAGAGGCATT
 
Template 
CCCCCCACAAAATGTAATGTCATGGTGAGGTTTAGGTGCAAATTCAGAGGCATTCAGCTAAACA
GACACAAATGAATACACCAAACACACACACACACACACACACACACACACACACACACACACAC
ACACACACACACACAGCCTCTGTTTAATATCCTGCTACATCATTATTACATGAGAGTGTAAAGA
GAGAGGTGATGTTACAATATAATCCTATCCTATCATGACATAGCTTTTCAAGTAAAACTCCATC
ATCTACCCTTTGACTATGAAGTGTATCTGGCATTTGACTTTGCCTGAAGCACAGAAAAGTCCAT
CCCTTCAGAGTAAAGGGATTCCAAAGGTTGAGTATGATGTTTCCACAGCAACAAGTTGTGGAAT
CGCAGTCCGAGCATATTAGAAGCCTGCGATACCTCAGCAATATCTCAGGGGTACGAGCTCGAAT
TCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTATCCGCTCACAATTCCACACAACA
TACG
Strain, Expected Size(s)

ACI/N 236 AVN/Orl 226 BBDP/Rhw 236
BBDR/Rhw 238 BC/CpbU 226 BDIX/Han 220
BN-Lx/Cub 220 BN/SsNHsd 220 BP/Cub 220
BUF/Pit 240 COP/OlaHsd 224 DA/PitN 238
DON/Melb 238 F344/Pit 238 FHH/Eur 224
GH/Omr 224 GK/KyoSwe 238 IS/Kyo 224
LE/Mol 220 LEW/Pit 238 LH/Mav 220
LN/Mav 226 LOU/CHan 220 M520/N 220
MHS/Gib 238 MNR/N 238 MNRA/N 238
MNS/Gib 238 MR/Pit 220 NEDH/K 238
NP9 222 ODU/N 224 OKA/Wsl 224
OM/Ztm 220 P5C 238 PVG/Pit 238
SD/Rij 238 SHR/OlaHsd 224 SHRSP/Riv 224
SR/Jr 226 SS/Jr 238 WAG/RijKyo 238
WF/Pit 238 WIST/Nhg 238 WKY/OlaHsd 224
WN/N 220 WTC/Kyo 224


The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD ID
Symbol
Name
Chr
Start
Stop
Species
621351Col1a2collagen type I alpha 2 chain43256393832598868Rat
GenBank Nucleotide AC107447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JH614516.1 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 33 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat

1 to 10 of 33 rows


Database
Acc Id
Source(s)
NCBI Gene 100873073 UniSTS
  100873085 UniSTS
  100873086 UniSTS
  100911218 UniSTS
  408157 UniSTS
  544558 UniSTS
  84352 UniSTS