Hc2 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Hc2 (Hypercalciuria QTL 2) Rattus norvegicus

Symbol: Hc2
Name: Hypercalciuria QTL 2
RGD ID: 634323
Trait: urine calcium amount   (VT:0002985)    
Measurement Type: urine calcium excretion rate   (CMO:0000763)    
LOD Score: 2.15
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24210,796 - 45,210,796RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.041 - 42,118,977RGD_MAPPER_PIPELINERnor6.0
Rnor_5.041 - 42,064,565RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.441 - 41,544,239RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.140 - 41,544,336RGD
Cross Type: intercross
Strains Crossed: WKY GHS 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
GHS  (IEA)
WKY  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Quantitative trait loci for hypercalciuria in a rat model of kidney stone disease. Hoopes RR Jr, etal., J Am Soc Nephrol 2003 Jul;14(7):1844-50.

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
41246724LOC120102192uncharacterized LOC1201021924362232376265Rat
41140831LOC120102190uncharacterized LOC1201021904479781509877Rat
41231670Ube2v1-ps18ubiquitin conjugating enzyme E2 V1, pseudogene 184482975484423Rat
41088472LOC1201025915.8S ribosomal RNA4494813494965Rat
41248797LOC1201027615.8S ribosomal RNA4598721598874Rat
7658986LOC102555256uncharacterized LOC1025552564605174660975Rat
41158717Uba52-ps14ubiquitin A-52 residue ribosomal protein fusion product 1, pseudogene 144654676655228Rat
40930419LOC1201025695.8S ribosomal RNA4749258749410Rat
41187448LOC1201026135.8S ribosomal RNA415464021546554Rat
41380460Vmn2r116l-ps20vomeronasal 2, receptor 116 like, pseudogene 20415473251636961Rat
41298104LOC1201026245.8S ribosomal RNA417891021789254Rat
41301541LOC1201026465.8S ribosomal RNA419298841930037Rat
9271714LOC103691583ATP synthase-coupling factor 6, mitochondrial pseudogene424971292500406Rat
40990800LOC1201026355.8S ribosomal RNA428779442878097Rat
41180048Ube2v1-ps14ubiquitin conjugating enzyme E2 V1, pseudogene 14429330092934492Rat
41229821LOC1201025805.8S ribosomal RNA429536932953845Rat
41198355Atp5pf-ps2ATP synthase peripheral stalk subunit F6, pseudogene 2433402343411812Rat
41322533LOC12010245360S ribosomal protein L17-like434293423429926Rat
9291847LOC103691954zinc finger protein 431-like437828863785748Rat
1590940Ube2v1-ps23ubiquitin conjugating enzyme E2 V1, pseudogene 23438085403809296Rat
40953497Rpl17-ps4ribosomal protein L17, pseudogene 4438732683873880Rat
41198911LOC1201027725.8S ribosomal RNA439165803916732Rat
41116805LOC1201025585.8S ribosomal RNA440134504013602Rat
7734302Ralbp1l3ralA binding protein 1 like 3445557004626990Rat
11385037Nid2l3nidogen 2 like 3446586894664208Rat
41164957LOC120102556U4 spliceosomal RNA446631144663273Rat
41389015LOC1201026025.8S ribosomal RNA447386154738766Rat
6500397Haus8-ps2HAUS augmin-like complex, subunit 8, pseudogene 2451360595149904Rat
2318720Tmed10-ps1transmembrane p24 trafficking protein 10, pseudogene 1451598915160624Rat
1563546Dhfr-ps1dihydrofolate reductase, pseudogene 1451690695173434Rat
2901Il6interleukin 6452146025219178Rat
11379972LOC10835085060S ribosomal protein L34 pseudogene453431965343591Rat
40930566LOC120102202uncharacterized LOC120102202454179535443360Rat
11457732LOC10835080360S ribosomal protein L7 pseudogene454435015452484Rat
1308207Dnajb6DnaJ heat shock protein family (Hsp40) member B6454526835556679Rat
1559986Ube3cubiquitin protein ligase E3C456489325749922Rat
1583498Polr2sl1RNA polymerase II, I and III subunit like 1457430675743270Rat
1588091Mnx1motor neuron and pancreas homeobox 1458665065871465Rat
1588109Nom1nucleolar protein with MIF4G domain 1458912205910741Rat
1588121Rsl24d1-ps1ribosomal L24 domain containing 1, pseudogene 1459362075936690Rat
1563910Lmbr1limb development membrane protein 1459746876146348Rat
1308287Rnf32ring finger protein 32461447496209320Rat
1596704Nsa2l2NSA2 ribosome biogenesis factor like 2463461226346808Rat
7571041LOC102550082uncharacterized LOC102550082464438396529474Rat
40945507LOC120102203uncharacterized LOC120102203468852886889077Rat
7585075LOC102546975uncharacterized LOC102546975469457526957648Rat
3673Shhsonic hedgehog signaling molecule469540176963170Rat
1310651Rbm33RNA binding motif protein 33469808077088334Rat
1583296Cnpy1canopy FGF signaling regulator 1471823117191408Rat
1561842En2engrailed homeobox 2472210967226943Rat
708457Insig1insulin induced gene 1473154947323972Rat
7528367LOC102546740uncharacterized LOC102546740473438867366843Rat
9428705LOC103692012uncharacterized LOC103692012474012697414270Rat
2851Htr5a5-hydroxytryptamine receptor 5A474449687454651Rat
41084820LOC120102658small nucleolar RNA SNORA48474975577497679Rat
1307547Paxip1PAX interacting protein 1475251327576659Rat
41057209Trnav-aac11transfer RNA valine (anticodon AAC) 11475722247572296Rat
68402Dpp6dipeptidyl peptidase like 6475893868508666Rat
41361083Gapdh-ps89Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 89476189377621235Rat
41104292LOC120102469uncharacterized LOC120102469476565417658707Rat
11471061LOC10835082860S ribosomal protein L10a pseudogene478453707857436Rat
41258656Nme2-ps4NME/NM23 nucleoside diphosphate kinase 2, pseudogene 4484972618497711Rat
41188942LOC120102576U6 spliceosomal RNA486173358617438Rat
41145582Cdk4-ps4cyclin-dependent kinase 4, pseudogene 4487039278732472Rat
41324069LOC120102206uncharacterized LOC120102206490687469071677Rat
7659798LOC102548175uncharacterized LOC102548175492055729215261Rat
1565759Actr3bactin related protein 3B492616319355496Rat
1564823Xrcc2X-ray repair cross complementing 2494238739502980Rat
41264669LOC120102207uncharacterized LOC120102207494664469476462Rat
11382704LOC108350851protein transport protein Sec61 subunit gamma pseudogene495574929557698Rat
2322811Rpl10a-ps9ribosomal protein L10A, pseudogene 9495895019590219Rat
1561536Cct8l2chaperonin containing TCP1 subunit 8 like 2496050359606971Rat
1587205Kmt2clysine methyltransferase 2C496206389834787Rat
41231425Map1lc3b-ps2microtubule-associated protein 1 light chain 3 beta, pseudogene 2497159929716689Rat
735097Galnt11polypeptide N-acetylgalactosaminyltransferase 11498376299871141Rat
11418580Rpl30-ps8ribosomal protein L30, pseudogene 8498565579856977Rat
1565271Galntl5polypeptide N-acetylgalactosaminyltransferase-like 5498734269923297Rat
41090173LOC120102456calcineurin B homologous protein 1-like499473129949851Rat
2323464LOC100359776hypothetical LOC100359776499839009993989Rat
727782Prkag2protein kinase AMP-activated non-catalytic subunit gamma 241001089010252155Rat
7526315LOC102554253uncharacterized LOC10255425341012088310125470Rat
7680602LOC102554193uncharacterized LOC10255419341016303510164178Rat
41315240LOC120102471uncharacterized LOC12010247141024574610251046Rat
621840RhebRas homolog, mTORC1 binding41027897010320160Rat
41241150LOC120102594U6 spliceosomal RNA41035377810353879Rat
1308547Crygncrystallin, gamma N41039401510401542Rat
41355964LOC120102472uncharacterized LOC12010247241042349610437437Rat
1566180Wdr86WD repeat domain 8641042349610443473Rat
1359489Nub1negative regulator of ubiquitin-like proteins 141044291710473689Rat
1561560Gpd1l3glycerol-3-phosphate dehydrogenase 1 like 341052377710527072Rat
1311869Smarcd3SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 341054869310580334Rat
1306404Chpf2chondroitin polymerizing factor 241057847010585940Rat
2325494Mir671microRNA 67141058074710580827Rat
1304942Abcf2ATP binding cassette subfamily F member 241059480210607620Rat
1564789Iqca1lIQ motif containing with AAA domain 1 like41061667710628300Rat
1562922Asb10ankyrin repeat and SOCS box-containing 1041063031810644270Rat
621864Gbx1gastrulation brain homeobox 141064595710672486Rat
1310751Agap3ArfGAP with GTPase domain, ankyrin repeat and PH domain 341067474610724848Rat
735120Tmub1transmembrane and ubiquitin-like domain containing 141072949410732060Rat
1311601FastkFas-activated serine/threonine kinase41073227310736332Rat
3711Slc4a2solute carrier family 4 member 241073641910754407Rat
70514Cdk5cyclin-dependent kinase 541075468210760110Rat
708578Asic3acid sensing ion channel subunit 341076050910764987Rat
1307655Abcb8ATP binding cassette subfamily B member 841076620610783598Rat
1560887Atg9bautophagy related 9B41078493410793832Rat
40958365LOC120102208uncharacterized LOC12010220841078763010789628Rat
3186Nos3nitric oxide synthase 341079383410814170Rat
621414Kcnh2potassium voltage-gated channel subfamily H member 241082683410859009Rat
11470826LOC108350647uncharacterized LOC10835064741091070610925138Rat
1560934Nup42nucleoporin 4241098555411002591Rat
1305564Klhl7kelch-like family member 741100636611055399Rat
1562906Hycc1hyccin PI4KA lipid kinase complex subunit 141113222411239120Rat
41185982Ube2i-ps6ubiquitin-conjugating enzyme E2I, pseudogene 641116255311163825Rat
40988581LOC120102210uncharacterized LOC12010221041117714311207140Rat
7653780LOC102555004uncharacterized LOC10255500441126005011268070Rat
6502346LOC100909675uncharacterized LOC10090967541128760511291820Rat
41215821Snord93small nucleolar RNA, C/D box 9341129011611290186Rat
1591393Tomm7translocase of outer mitochondrial membrane 741130512211311963Rat
1560433Rint1RAD50 interactor 141131941611355740Rat
1307054Pus7pseudouridine synthase 741136016911401139Rat
41232405LOC120102743small nucleolar RNA SNORD9341143996711440037Rat
1305107Srpk2SRSF protein kinase 241146468411655993Rat
1309641Kmt2elysine methyltransferase 2E41165821811727373Rat
41106171LOC120102473uncharacterized LOC12010247341176510411771452Rat
40993653LOC120102618U7 small nuclear RNA41178827611788340Rat
9159670LOC103692025uncharacterized LOC10369202541183620012379126Rat
9400372Mifl1macrophage migration inhibitory factor like 141196694511973092Rat
41244972Rnu2-12RNA, U2 small nuclear 1241237540312375483Rat
40977562LOC120102619U7 small nuclear RNA41244095712441013Rat
41392212LOC120102614U7 small nuclear RNA41247725012477311Rat
1561088Orc5origin recognition complex, subunit 541254800712612611Rat
41354020LOC120102148uncharacterized LOC12010214841264090312643798Rat
41018004LOC120102692small nucleolar RNA SNORA1741272068412720803Rat
3553Relnreelin41273617713162956Rat
9334471Elobl5elongin B like 541311186113117780Rat
7532340Cryzl1-ps1crystallin zeta like 1, pseudogene 141319823613199448Rat
69334Slc26a5solute carrier family 26 member 541321026013249289Rat
3428Psmc2proteasome 26S subunit, ATPase 241325585013270160Rat
620524Dnajc2DnaJ heat shock protein family (Hsp40) member C241327023913297438Rat
41053492LOC120102645small nucleolar RNA SNORA4841328075513280901Rat
621297Pmpcbpeptidase, mitochondrial processing subunit beta41329758313310363Rat
1587329Arf1-ps3ADP-ribosylation factor 1, pseudogene 341332548013328608Rat
735197NapepldN-acyl phosphatidylethanolamine phospholipase D41336053213398815Rat
1305915Armc10armadillo repeat containing 1041339900413414594Rat
1642425Fbxl13F-box and leucine-rich repeat protein 1341341488013607079Rat
41107235LOC120102659small nucleolar RNA SNORA1741349698613497113Rat
1560165Lrrc17leucine rich repeat containing 1741350142813531845Rat
1562135Fam185afamily with sequence similarity 185, member A41354202213662967Rat
41018904LOC120102739small nucleolar RNA SNORD8641355582413555909Rat
1559535Ccdc146coiled-coil domain containing 14641366276613811619Rat
620170Fgl2fibrinogen-like 241371056613716207Rat
41335650LOC120102212uncharacterized LOC12010221241375544713761134Rat
1563271Gsapgamma-secretase activating protein41381304613907875Rat
41237841Net1-ps1neuroepithelial cell transforming 1, pseudogene 141395581813973331Rat
41193151LOC120102737small nucleolar RNA SNORA4041398103313981157Rat
7666239LOC102556034uncharacterized LOC10255603441401221314020864Rat
620894Ptpn12protein tyrosine phosphatase, non-receptor type 1241402099714092931Rat
41353109LOC120102213uncharacterized LOC12010221341410059914110132Rat
1308748Rsbn1lround spermatid basic protein 1-like41413807614203972Rat
9685233AptrAlu-mediated CDKN1A/p21 transcriptional regulator41413827514139577Rat
1308939Tmem60transmembrane protein 6041421002914214884Rat
1310593Phtf2putative homeodomain transcription factor 241421519014330549Rat
621855Magi2membrane associated guanylate kinase, WW and PDZ domain containing 241438638915870036Rat
41061536LOC120102478uncharacterized LOC12010247841439387614398745Rat
40992258LOC120102477uncharacterized LOC12010247741458890314591674Rat
41096115Rpl28-ps10ribosomal protein L28, pseudogene 1041481578414816098Rat
41012632LOC120102678small nucleolar RNA SNORA1741494878714948916Rat
11420335Tmsb10l4thymosin beta 10 like 441529919815299866Rat
9417558Lmnb2-ps1lamin B2, pseudogene 141545728615601866Rat
41303880Rnu6-543RNA, U6 small nuclear 54341558013915580245Rat
41216683Trnap-agg63transfer RNA proline (anticodon AGG) 6341570415715704231Rat
41065937LOC120102475uncharacterized LOC12010247541580920515825962Rat
41161253LOC120102476uncharacterized LOC12010247641584694315848437Rat
76813254921504A21RiklRIKEN cDNA 4921504A21 gene like41587049715898907Rat
2318988Bclaf1-ps1BCL2-associated transcription factor 1, pseudogene 141588530715888072Rat
41076500LOC120102698small nucleolar RNA SNORA1741628895316289069Rat
6497775Apex1-ps2apurinic/apyrimidinic endodeoxyribonuclease 1, pseudogene 241644519516446152Rat
2713Gnai1G protein subunit alpha i141681400016898119Rat
727817Gnat3G protein subunit alpha transducin 341716250017212283Rat
41284761Trnaa-agc88transfer RNA alanine (anticodon AGC) 8841719001717190091Rat
2301Cd36CD36 molecule41731734317410084Rat
1565355Cd36l1CD36 molecule like 141742474917465808Rat
41249586Cd36-ps1CD36 molecule, pseudogene 141748783717514900Rat
1309343Sema3csemaphorin 3C41758321217747234Rat
41391017LOC120102215uncharacterized LOC12010221541768857917739337Rat
1563537Rps9-ps5ribosomal protein S9, pseudogene 541782268017823238Rat
7549033LOC102551002uncharacterized LOC10255100241796565718047911Rat
41145508LOC120102685small nucleolar RNA SNORA1741807329818073422Rat
2322730Tfb1m-ps1transcription factor B1, mitochondrial, pseudogene 141819251718200323Rat
7747752Cdhr17cadherin related family member 1741842787718525060Rat
2794Hgfhepatocyte growth factor41867373618745582Rat
9414363LOC103692033uncharacterized LOC10369203341874450218757594Rat
2247Cacna2d1calcium voltage-gated channel auxiliary subunit alpha2delta 141895061119374969Rat
2322535Plrg1-ps1pleiotropic regulator 1, pseudogene 141940646319432154Rat
40929882LOC120102654small nucleolar RNA SNORA4841944411319444260Rat
69406Pclopiccolo (presynaptic cytomatrix protein)41969143920050015Rat
11466909LOC108350655uncharacterized LOC10835065542023314320255059Rat
1310973Sema3esemaphorin 3E42029753420555287Rat
41344080LOC1201025525S ribosomal RNA42051960120519719Rat
7646743LOC102552661uncharacterized LOC10255266142062555220630241Rat
40969825LOC120102459NEDD4-binding protein 1-like42071351420714914Rat
41257705LOC120102460NEDD4-binding protein 1-like42074919220750556Rat
41285801LOC120102461NEDD4-binding protein 1-like42075642420757551Rat
41096301LOC120102462NEDD4-binding protein 1-like42076368920765077Rat
1584092N4bp1l1Nedd4 binding protein 1 like 142080623020807323Rat
40989850LOC120102149NEDD4-binding protein 1-like42081530520815945Rat
41113357LOC120102150NEDD4-binding protein 1-like42082256520823205Rat
1583001Scaf11-ps1SR-related CTD-associated factor 11, pseudogene 142087234120886738Rat
41165648LOC120102463NEDD4-binding protein 1-like42088708520888188Rat
41240105LOC120102151NEDD4-binding protein 1-like42092961620931001Rat
41199734LOC120102216protein SCAF11-like42102395521027327Rat
7550011LOC102552749MLV-related proviral Env polyprotein-like42105194121053799Rat
41115840LOC120102217uncharacterized LOC12010221742115968721181773Rat
3657Sema3asemaphorin 3A42128239821754834Rat
41320971LOC120102218uncharacterized LOC12010221842209288522119273Rat
727939Sema3dsemaphorin 3D42231676922505930Rat
40955874LOC120102571U6 spliceosomal RNA42296828522968392Rat
41054814Envl-ps4MLV-related proviral Env polyprotein-like, pseudogene 442298847722990225Rat
41303418LOC120102627small nucleolar RNA SNORA3142308406723084203Rat
7624497LOC102553320uncharacterized LOC10255332042359296423661292Rat
1562636Ppp1r3bl1protein phosphatase 1, regulatory subunit 3B like 142376587423768883Rat
1564798Tmem183a-ps1transmembrane protein 183A, pseudogene 142389715723898281Rat
6492128Rps6-ps11ribosomal protein S6, pseudogene 1142409335324096338Rat
9197484LOC103692044mitochondrial import inner membrane translocase subunit Tim8 A pseudogene42428942924289895Rat
2744Grm3glutamate metabotropic receptor 342436485424643972Rat
1563349Elapor2endosome-lysosome associated apoptosis and autophagy regulator family member 242461316324805729Rat
2325362Mir879microRNA 87942472445524724530Rat
11462374LOC108350658uncharacterized LOC10835065842477957124794265Rat
7536117LOC102555663uncharacterized LOC10255566342480591224807670Rat
70966Dmtf1cyclin D binding myb-like transcription factor 142490993724950786Rat
1562351Tmem243transmembrane protein 24342495079124968642Rat
41334218LOC120102603U6 spliceosomal RNA42495272424952824Rat
41118809LOC120102219uncharacterized LOC12010221942499381825003812Rat
41212670Eif3k-ps1eukaryotic translation initiation factor 3, subunit K, pseudogene 142501206425012685Rat
70908Crotcarnitine O-octanoyltransferase42506827025133111Rat
620248Abcb4ATP binding cassette subfamily B member 442515099825209489Rat
41286244LOC120102221uncharacterized LOC12010222142517166925175960Rat
41047811C1h11orf98-ps2similar to human chromosome 11 open reading frame 98, pseudogene 242517472725175091Rat
3318Abcb1bATP-binding cassette, sub-family B member 1B42524276125325194Rat
41222673LOC120102222uncharacterized LOC12010222242524540025250299Rat
619951Abcb1aATP binding cassette subfamily B member 1A42535746725529941Rat
1587590Rundc3bRUN domain containing 3B42546254325599477Rat
1308774Slc25a40solute carrier family 25, member 4042563144725676454Rat
1305854Dbf4DBF4-CDC7 kinase regulatory subunit42567657025701152Rat
1585016Adam22ADAM metallopeptidase domain 2242571605525970932Rat
41165065Trnap-agg72transfer RNA proline (anticodon AGG) 7242578050525780585Rat
41303543LOC120102223uncharacterized LOC12010222342582169625835920Rat
1584485Srisorcin42597349325997879Rat
1560331Steap4STEAP4 metalloreductase42607718226099859Rat
41240640LOC120102760U2 spliceosomal RNA42637529726375438Rat
41340251Ranbp1-ps1RAN binding protein 1, pseudogene 142646895426472445Rat
1589640Zfp804bzinc finger protein 804B42660851027144717Rat
41129509Rnu2-34RNA, U2 small nuclear 3442661716926617247Rat
41258698LOC120102775U4 spliceosomal RNA42661813426618285Rat
1564345Tex47testis expressed 4742664409826647393Rat
1589639Cd2ap-ps1CD2-associated protein, pseudogene 142719800627200492Rat
7734714LOC102549955uncharacterized LOC10254995542721068227262917Rat
41114928Ewsr1-ps6EWS RNA-binding protein 642752623327528198Rat
1589637Psme2-ps2proteasome activator subunit 2, pseudogene 242772478627725601Rat
2323949Psma2-ps1proteasome 20S subunit alpha 2, pseudogene 142783744727838144Rat
1561754Hmgb3l2high mobility group box 3 like 242789164327892122Rat
1311543Steap1STEAP family member 142827697228287484Rat
1307050Steap2STEAP2 metalloreductase42834776928368177Rat
6496360Cfap69cilia and flagella associated protein 6942837960428452562Rat
41220038Fam237bfamily with sequence similarity 237 member B42845785128458270Rat
1305878Gtpbp10GTP binding protein 1042847685728494375Rat
1561053Cldn12claudin 1242852265928533647Rat
9118001Pttg1ip2PTTG1IP family member 242856106328585400Rat
11517003LOC108350663uncharacterized LOC10835066342856196828575524Rat
1305544Cdk14cyclin-dependent kinase 1442866641629258865Rat
40946680Rps15a-ps6ribosomal protein S15a, pseudogene 642882455328832585Rat
7573585Speer4cl3spermatogenesis associated glutamate (E)-rich protein 4C like 342906776129096268Rat
61916Fzd1frizzled class receptor 142931030329314701Rat
41019115LOC120102226uncharacterized LOC12010222642933283229340185Rat
41390098LOC120102572U6 spliceosomal RNA42944279329442899Rat
41107770LOC120102227uncharacterized LOC12010222742958142329591564Rat
2324789Mterf1-ps1mitochondrial transcription termination factor 1, pseudogene 142988661129887781Rat
2323518Mterf1-ps2mitochondrial transcription termination factor 1, pseudogene 242991257629913741Rat
2481Cyp51cytochrome P450, family 5143003695630055410Rat
620833Akap9A-kinase anchoring protein 943005673830192716Rat
621318Mterf1mitochondrial transcription termination factor 143022634530233402Rat
1562785Lrrd1leucine-rich repeats and death domain containing 143026314730293119Rat
1305929Krit1KRIT1, ankyrin repeat containing43029920330333366Rat
1597088Ankib1ankyrin repeat and IBR domain containing 143033367830457781Rat
7727723Dnd1-ps2DND microRNA-mediated repression inhibitor 1, pseudogene 243041499030418462Rat
1306626Tmbim7transmembrane BAX inhibitor motif containing 743046665130499565Rat
1562004Gatad1GATA zinc finger domain containing 143050753030519107Rat
1559939Pex1peroxisomal biogenesis factor 143051995030558953Rat
1310794Rbm48RNA binding motif protein 4843055906330569409Rat
15884451700109H08RiklRIKEN cDNA 1700109H08 gene like43056904530589503Rat
1306302Fam133bfamily with sequence similarity 133, member B43058964630616291Rat
621121Cdk6cyclin-dependent kinase 643063765030829688Rat
11356515LOC108350668uncharacterized LOC10835066843090631330909925Rat
1562992Hnrnpa1-ps33heterogeneous nuclear ribonucleoprotein A1, pseudogene 3343093491530936057Rat
1560872RGD1560872similar to interferon induced transmembrane protein 2 (1-8D)43096084530961278Rat
1565361Golga3-ps1golgin A3, pseudogene 143108092331085695Rat
6494620Zc3hav1-ps7zinc finger CCCH-type containing, antiviral 1, pseudogene 743108849231090178Rat
2323113Bcl2l2-ps2Bcl2-like 2, pseudogene 243114616431148432Rat
1563091Samd9sterile alpha motif domain containing 943116463931184278Rat
7747029Samd9l-ps2sterile alpha motif domain containing 9-like, pseudogene 243120032731216722Rat
9213284Samd9l-ps1sterile alpha motif domain containing 9-like, pseudogene 143126795031333461Rat
41041657Samd9l2sterile alpha motif domain containing 9 like 243132004031333472Rat
1562531Samd9lsterile alpha motif domain containing 9 like43136205431376412Rat
1305697Hepacam2HEPACAM family member 243144619531480859Rat
1304751Vps50VPS50 subunit of EARP/GARPII complex43148442431585617Rat
621001Calcrcalcitonin receptor43166127031736392Rat
2314881Mir653microRNA 65343169271431692810Rat
2314886Mir489microRNA 48943169335531693460Rat
628629Tfpi2tissue factor pathway inhibitor 243198178631986707Rat
1595475Gngt1G protein subunit gamma transducin 143200626732009252Rat
621515Gng11G protein subunit gamma 1143202300332028443Rat
11407309LOC108350669uncharacterized LOC10835066943205605032112584Rat
2203Bet1Bet1 golgi vesicular membrane trafficking protein43211623232126592Rat
7661902LOC102557375uncharacterized LOC10255737543245489832457445Rat
1561836Chchd2l2-ps1coiled-coil-helix-coiled-coil-helix domain containing protein 2-like 2, pseudogene 143251175332512295Rat
621351Col1a2collagen type I alpha 2 chain43256393832598868Rat
7572472LOC102552043uncharacterized LOC10255204343264282332644911Rat
1596912Casd1CAS1 domain containing 143265919632739228Rat
1303201Sgcesarcoglycan, epsilon43277147732842238Rat
1595574Peg10paternally expressed 1043284244132855639Rat
40975034LOC120102559U4 spliceosomal RNA43292226032922342Rat
1559912Ckap2-ps1cytoskeleton-associated protein 2, pseudogene 143295899232961061Rat
632280Ppp1r9aprotein phosphatase 1, regulatory subunit 9A43297050133292360Rat
620062Pon1paraoxonase 143329473733325759Rat
1302965Pon3paraoxonase 343335698333383681Rat
1309954Pon2paraoxonase 243338970233425186Rat
1563114Asb4ankyrin repeat and SOCS box-containing 443350699233544630Rat
1591728Vil1-ps1villin 1, pseudogene 143357586133580483Rat
7584396LOC102552448uncharacterized LOC10255244843358265233589860Rat
69061Pdk4pyruvate dehydrogenase kinase 443359179633601798Rat
11435887Rps29-ps20ribosomal protein S29, pseudogene 2043366405033666091Rat
2512Dync1i1dynein cytoplasmic 1 intermediate chain 143385259734166159Rat
1565889Slc25a13solute carrier family 25 member 1343417922434361912Rat
41148263LOC120102562U6 spliceosomal RNA43421018434210290Rat
9376829LOC103692067protein LLP homolog pseudogene43429933134305057Rat
11431277Rpl31l14ribosomal protein L31 like 1443430256234310161Rat
7657264LOC102554854uncharacterized LOC10255485443441491134438788Rat
9229365LOC103692052uncharacterized LOC10369205243443911634447138Rat
41375555LOC120102231uncharacterized LOC12010223143459265234594248Rat
1590628Sem1SEM1 26S proteasome subunit43467184834692005Rat
41211262LOC120102776U4 spliceosomal RNA43469280334692885Rat
1566237Rpl35-ps9ribosomal protein L35, pseudogene 943487396834874422Rat
6488535LOC100912227uncharacterized LOC10091222743494327134993044Rat
1561539Dlx6distal-less homeobox 643498426434989926Rat
2506Dlx5distal-less homeobox 543499913935003504Rat
1305143Sdhaf3succinate dehydrogenase complex assembly factor 343510053335160740Rat
1589400Rps25-ps4ribosomal protein S25, pseudogene 443527172035272156Rat
11453897LOC108350853uncharacterized LOC10835085343529687035304056Rat
3807Tac1tachykinin, precursor 143567918335687180Rat
41397044Set-ps6Set nuclear proto-oncogene, pseudogene 643574428035747371Rat
2162Asnsasparagine synthetase (glutamine-hydrolyzing)43578499535803474Rat
9388809Polr1d-ps1RNA polymerase I and III subunit D, pseudogene 143592757835928571Rat
621105C1galt1core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 143593098135966100Rat
40976402LOC120102629small nucleolar RNA SNORA3/SNORA45 family43596972735969848Rat
7526246LOC102550307uncharacterized LOC10255030743601868036040591Rat
1564680Col28a1collagen type XXVIII alpha 1 chain43606998036223128Rat
1308432Miosmeiosis regulator for oocyte development43626341936289546Rat
1306810Rpa3replication protein A343630464936307755Rat
1563612Glcci1glucocorticoid induced 143630795636635614Rat
621465Ica1islet cell autoantigen 143665647536804705Rat
7715339LOC102550643uncharacterized LOC10255064343678088436787735Rat
3218Nxph1neurexophilin 143699806837311135Rat
41319059LOC120102653small nucleolar RNA SNORA4843748469037484833Rat
1585861Nsa2-ps9NSA2 ribosome biogenesis factor, pseudogene 943756118837561974Rat
1565400Actc1-ps1actin, alpha, cardiac muscle 1, pseudogene 143762082037622087Rat
3600Rps4x-ps9ribosomal protein S4, X-linked, pseudogene 943775837337759289Rat
1560448Yae1l1YAE1 maturation factor of ABCE1 like 143791783737918511Rat
2322347Tomm20-ps2translocase of outer mitochondrial membrane 20, pseudogene 243801322738013802Rat
11516558LOC10835085540S ribosomal protein S23 pseudogene43826319438263628Rat
1585825Hmgn1l1high mobility group nucleosomal binding domain 1 like 143860485638606026Rat
40971411LOC120102154uncharacterized LOC12010215443864163538646263Rat
41248065LOC120102234uncharacterized LOC12010223443890194838907419Rat
2322154Psma6-ps3proteasome 20S subunit alpha 6, pseudogene 343919157039192321Rat
1562387Gtpbp4-ps3GTP binding protein 4, pseudogene 343939107939425066Rat
7596691LOC102547989uncharacterized LOC10254798943959860439678420Rat
40982246LOC120102694small nucleolar RNA SNORA1743973394139734060Rat
1584730Stmnl-ps2stathmin like, pseudogene 243976968439770132Rat
1584719Ndufa4Ndufa4, mitochondrial complex associated44000221640009384Rat
1563764Phf14PHD finger protein 1444000969140195877Rat
41002968LOC120102235uncharacterized LOC12010223544011938740123944Rat
41140158LOC120102687small nucleolar RNA SNORA1744030905740309173Rat
1566201Thsd7athrombospondin type 1 domain containing 7A44046112440899345Rat
7641224Rps2-ps40ribosomal protein S2, pseudogene 4044068219240683121Rat
9330178LOC10369207460 kDa heat shock protein, mitochondrial pseudogene44072136940732042Rat
11363596LOC108350856uncharacterized LOC10835085644093701340945223Rat
1587202Pkm-ps19pyruvate kinase M1/2, pseudogene 1944115613841277227Rat
1303037Tmem106btransmembrane protein 106B44132812541347315Rat
1561223Vwdevon Willebrand factor D and EGF domains44145357341525421Rat
1583532Gnpnat1-ps1glucosamine-phosphate N-acetyltransferase 1, pseudogene 144154887241549774Rat
1564521Tas2r7ltaste receptor type 2 member 7-like44156953641570447Rat
7609534LOC102548489uncharacterized LOC10254848944169446041701116Rat
6493676LOC100911252peptidyl-prolyl cis-trans isomerase A-like44182887341829619Rat
1307778Tmem168transmembrane protein 16844183062341858763Rat
41264909LOC120102634small nucleolar RNA SNORA4444186943541869561Rat
7545679Lyrm4-ps1LYR motif containing 4, pseudogene 144187003941878699Rat
1588441Bmt2base methyltransferase of 25S rRNA 2 homolog44188163041945472Rat
41065803LOC120102155uncharacterized LOC12010215544198883241995216Rat
71011Gpr85G protein-coupled receptor 8544210013842109584Rat
2322826Smim30l1small integral membrane protein 30 like 144214169642143340Rat
2323857Plscr2-ps1phospholipid scramblase 2, pseudogene 144223615742358953Rat
41230048LOC120102706small nucleolar RNA SNORA1744239883242398962Rat
1597981Hnrnpa1-ps53heterogeneous nuclear ribonucleoprotein A1, pseudogene 5344246088042461983Rat
41017590Rnu6-210RNA, U6 small nuclear 21044272163142721733Rat
1561312Ppp1r3aprotein phosphatase 1, regulatory subunit 3A44293735342980195Rat
1559697Foxp2forkhead box P244313382743712442Rat
1585845Rbmxl1bRbmx like 1B44395627543957957Rat
1309532MdficMyoD family inhibitor domain containing44397231044052162Rat
41011912LOC120102753U2 spliceosomal RNA44418613544186318Rat
1562178Ak2-ps3adenylate kinase 2, pseudogene 344496660644967403Rat
3846Tfectranscription factor EC44510612945180236Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10800D4Wox2798452182945218392Ratregion
10801D4Arb14190452182275218417Ratregion
11107D2Mit20115454018815402004Ratregion
34154D4Mgh2320241024890010249102Ratregion
34200D4Mgh114442133334321333491Ratregion
34238D4Mgh225043952426439524530Ratregion
34343D4Mgh22113490401329040223Ratregion
34423D4Mgh2619043153230431532516Ratregion
34601D4Mgh2814441080790210808048Ratregion
34716D4Mgh1413343950527539505420Ratregion
11310D4Bro117341075026410750427Ratregion
36037D4Rat1313944199617341996312Ratregion
36127D4Rat917242690728526907447Ratregion
36305D4Rat4182479356107935781Ratregion
37618D4Rat139140477619957762132Ratregion
37752D4Rat8918343644394736444128Ratregion
37948D4Rat10016843522511535225281Ratregion
36448D4Rat617341477063014770800Ratregion
36476D4Rat3160499408859941032Ratregion
36504D4Rat214441002490110025036Ratregion
36632D4Rat244138041107679011076919Ratregion
35160D4Rat1113143640514636405277Ratregion
35625D4Rat1417944446372044463908Ratregion
35847D4Rat1214643846577438465927Ratregion
35895D4Rat117641132007611320244Ratregion
35903D4Rat513841411890414119032Ratregion
35913D4Rat1016842959328729593455Ratregion
39688D4Rat21110644019349640193597Ratregion
39704D4Rat22222442271068522710908Ratregion
39732D4Rat209210488437518843921Ratregion
39882D4Rat14424841049520110495445Ratregion
40502D4Rat147159472128967213051Ratregion
40728D4Rat143124458676625867778Ratregion
38440D8Rat10921743438534834385554Ratregion
38628D4Rat13022243865742738657645Ratregion
38776D4Rat142220494340089434224Ratregion
40162D4Rat21012543464711334647234Ratregion
38908D4Rat12613542949419529494328Ratregion
38918D4Rat13624141304540213045633Ratregion
39194D4Rat11524043717795037178180Ratregion
42144D4Arb13130478729137873066Ratregion
42156D4Arb2532043443011934430484Ratregion
42158D4Arb2613043950527539505418Ratregion
41202D4Rat15219744078009840780283Ratregion
41208D4Rat146118495997079599825Ratregion
41214D4Rat15021641994452419944727Ratregion
42684D4Rat247147483520978352242Ratregion
42685D4Rat220239459490085949253Ratregion
42686D4Rat248246450806675080906Ratregion
42687D4Rat25020341078128510781494Ratregion
42688D4Rat249227476767717677007Ratregion
42689D4Rat25120142284320422843398Ratregion
42690D4Rat25222543630326136303483Ratregion
42691D4Rat22321243884718238847397Ratregion
42691D4Rat22321243884718238847569Ratregion
40958D4Rat14920141930324019303440Ratregion
41102D4Rat15123543258398032584199Ratregion
41888D4Rat28224544086875240869000Ratregion
43765D4Got1123479490857949208Ratregion
43766D4Got10187495339609534147Ratregion
43767D4Got1513941067578910675932Ratregion
43770D4Got8117495699399570056Ratregion
43771D4Got9178493419389342116Ratregion
43773D4Got1426341120879511209058Ratregion
43774D4Got1314941135903311359180Ratregion
43776D4Got1110741044770010447806Ratregion
43778D4Got1619441392419213924386Ratregion
43779D4Got1816341488631214886475Ratregion
43780D4Wox2621041558306015583255Ratregion
43782D4Got2017943854696138547140Ratregion
43783D4Got2116643723314237233308Ratregion
43784D4Got15714743773361237733759Ratregion
43786D4Got2423943831722238317461Ratregion
43787D4Got2517643896180238961978Ratregion
43788D4Got2724744246796842468215Ratregion
60433D4Got1926743644075636441020Ratregion
60434D4Got2135478102447810377Ratregion
60435D4Got229043687397336874063Ratregion
60436D4Got2629844019331240193610Ratregion
60437D4Got3173469708766971049Ratregion
60442D4Got5127482530418253170Ratregion
625771D4Got1217041107678611076956Ratregion
625773D4Got2317343854696938547140Ratregion
625813D4Got6141494853599485497Ratregion
67352D4Arb1717443775307137753245Ratregion
67353D4Arb1830242280936322809665Ratregion
67354D4Arb1910641229265912292765Ratregion
1358007D16Chm7815842636671126366820Ratregion
1630056D4Got26225641885413218854388Ratregion
1630284D4Ulb113841939005719390195Ratregion
1630504D4Wox5319842535758425357782Ratregion
1631920D4Got28114543346231433462458Ratregion
1631954D4Got28928142420136824201649Ratregion
1627175D4Uia1043928891439289215Ratregion
1627844D4Got28222342780898627809209Ratregion
1628200D7Got2472014212601212804Ratregion
1628200D7Got2472014629823629991Ratregion
1628886D4Got29610441966106519661169Ratregion
1629143D4Wox3215542250627722506432Ratregion
1629489D4Uwm420841480828514808493Ratregion
1629577D4Cebr3215465296926529907Ratregion
1629639D4Got20117642483400924834180Ratregion
1629715D4Uia1193471117627111855Ratregion
1638783D4Wox2911541075026810750383Ratregion
1639633D4Got20316642030764320307809Ratregion
1641042D4Got200169482035328203701Ratregion
1641681D4Got20522243675010136750323Ratregion
1640436D4Got30226642572784125728107Ratregion
1640737D4Got30727443147037731470649Ratregion
1634999D4Got28322642825234628252572Ratregion
1635034D4Got25418241169856511698740Ratregion
1635808D4Got20218342157490121575084Ratregion
1635857D4Got25217042608089626081067Ratregion
1636092D4Got27822142941620429416425Ratregion
1636261D4Got28621243304435733044568Ratregion
1636357D4Got26519143464295934643150Ratregion
1636460D4Got28417043002924730029419Ratregion
1637051D4Ulb317442488289124883065Ratregion
1637341D4Got24827742969707729697349Ratregion
1637821D4Got20415042710022527100375Ratregion
1638224D4Got29226643338273033382996Ratregion
1638305D4Got28515143155157231551723Ratregion
1638383D4Got30616042221757022217730Ratregion
1632459D4Got27615143516722435167370Ratregion
1632475D4Got29516642187376721873935Ratregion
1633717D4Got25516142437029024370451Ratregion
1634118D4Got28711442502054025020656Ratregion
1634619D4Got25013944276291542763049Ratregion
7206384fj64a08.x1044510169745102827Ratregion
7387228rs8168428044044699940446999Ratregion
7193111Col1a216743256383732564004Ratregion
7241149D4Kini328043102124831021530Ratregion
7241151D4Kini428543148275031483035Ratregion
7241153D4Kini517243155157931551751Ratregion
7241155D4Kini614143163163031631771Ratregion
7241157D4Kini721443172260531722819Ratregion
7241159D4Kini820643199788931998095Ratregion
7241161D4Kini920943202271532022924Ratregion
7241163D4Kini1033243210290532103237Ratregion
7241165D4Kini1143211205832112354Ratregion
7241167D4Kini1229643239799732398293Ratregion
7241169D4Kini1327143375719333757466Ratregion
7241171D4Kini1419442535331625353510Ratregion
7241173D4Kini1523842515516325155403Ratregion
7241175D4Kini1621242689607826896290Ratregion
7241177D4Kini1723242773266327732895Ratregion
7193020Dlx541643499918234999598Ratregion
7193021Dlx56543500316335003228Ratregion
7193044EN2116472229857223101Ratregion
7192157En2151472211367221287Ratregion
7206264Adam2233342589711225897445Ratregion
5038824RH12735421743329487433295091Ratregion
5038914RH12740518543335700833357193Ratregion
5036251D9Mgc42e81499083079908388Ratregion
5036434Nos327441079424310794517Ratregion
5038996RH12745318843136208631362274Ratregion
5036655AU04873128841065713010657418Ratregion
5036837AU04936615541961132819611483Ratregion
5037145RH6903121442129089821291112Ratregion
5037197RH9182019243498961734989809Ratregion
5035548EN2147472229317223078Ratregion
5035623WI-1802712542460944824609573Ratregion
5025984RH13045718344405177444051957Ratregion
5026014RH13057818241165570711655889Ratregion
5026026RH13062520041000776610007966Ratregion
7206108UniSTS:532119182452148995215081Ratregion
7206112UniSTS:532129226452163765217472Ratregion
7206128UniSTS:53217111443320470533204819Ratregion
5031384PMC155039P119541081109310811288Ratregion
5031516AU04807115244137361441373766Ratregion
5034091RH14133018843285371332853901Ratregion
5028809RH14241015941325588013256039Ratregion
5034267RH14199420441548301915483223Ratregion
5034343SGC3451213442465233024652466Ratregion
5026462RH13230618841975327519753463Ratregion
5026500RH13245119143259860832598800Ratregion
5029141RH14367412443312854133128665Ratregion
5034576BG37332918441258530012585856Ratregion
5026686RH133147185498338579834042Ratregion
5034736BI28294315641172315311723309Ratregion
50294210610010I23Rik30941332902013329329Ratregion
5032267AV0284258541069414410694229Ratregion
5035018Cryzl125041319866013198910Ratregion
5026994RH13431921741758346017583677Ratregion
5029713AI55545118743052189530522341Ratregion
5032469D13Ertd614e22741060733110607558Ratregion
5032469D13Ertd614e22741060733110607558Ratregion
5032615RH134659192450455475045737Ratregion
5032631RH13471919142597360325973794Ratregion
5032675RH13488020143052005030520251Ratregion
5034960AA80102116443334803433348198Ratregion
5027287AW22754814642931406329314209Ratregion
5027289U247038641316284113162927Ratregion
5027311AV0059169543358994233590037Ratregion
5030001BF38851713441529865615298791Ratregion
5032843RH13669824942928429429284547Ratregion
5035282BF38772015244042285340423004Ratregion
5032955RH13709418143494757434947755Ratregion
5032995RH137229164494422439442407Ratregion
5027715GDB:4584943041057897810579181Ratregion
5030241AW52683118441364407913644263Ratregion
5033093RH13756619543647304736473242Ratregion
5025240RH12755618242836796028368142Ratregion
502783306.MHAa81T_M13Rev.seq14043033158430331724Ratregion
5025312RH12783621844214200542142223Ratregion
5033369RH13858412841081338910813517Ratregion
5033503RH13906619642563161225631808Ratregion
5033629RH139525197498344449834641Ratregion
5033755RH14000320541144372611443931Ratregion
5033807RH14019420243059004430590246Ratregion
5025806RH12974919842356110323561301Ratregion
5051188RH13449020243354609933546301Ratregion
5056653RH14450217741928653819286715Ratregion
5054585RH14330929444045571040456004Ratregion
5059420AW53066815143326006133260212Ratregion
5054749RH14340314943285230232852451Ratregion
5055071RH14358912941406765014067779Ratregion
5058554BF39327824043327976133280001Ratregion
5058594BE10213915742461735024617507Ratregion
5055831RH14402713142460961024609741Ratregion
5055125RH14362017043279601832796188Ratregion
5056185RH144232157459089885909145Ratregion
5056231RH14425914541108066611080811Ratregion
5056537RH14443615641073027410730430Ratregion
5056997UniSTS:238161508472225127223020Ratregion
5058938BF39384114242567222225672364Ratregion
5052935RH14235916844183074041830908Ratregion
5053063RH14243223942513272425132963Ratregion
5058280BF38693919941192697811927177Ratregion
5049956RH13377918041172969711729877Ratregion
5049986RH13379619742507611025076307Ratregion
5049986RH13379619742509369225093889Ratregion
5058368BF41976518743673886836739055Ratregion
5050380RH13402320341012091410121117Ratregion
5050400RH13403519744496792744968117Ratregion
5053297RH14256711141326393413264045Ratregion
7191223d4bro117341075026410750427Ratregion
5050624RH13416421141416742514167636Ratregion
7193121EN287472229887223075Ratregion
5052450Z3155712742344079323440920Ratregion
5052727RH142237165452179915218160Ratregion
5054027RH14298813343354541933545552Ratregion
5052837RH14230317241895081518950987Ratregion
5052963RH14237516541329678313297330Ratregion
5051384AI85467312141025104810251169Ratregion
5051407AI38575210243499939734999499Ratregion
5054343RH14317019143030472630304917Ratregion
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5045422RH13116918741936246319362650Ratregion
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5044274RH13050818142853327728533458Ratregion
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5044788RH13080418641174368011743866Ratregion
5048740RH13307818441076631110766495Ratregion
5046418RH13174119642845223628452432Ratregion
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5045002RH13092719543418016734180571Ratregion
5045212RH13104818944404993944050128Ratregion
5048856RH133145192469840936984285Ratregion
5048994RH13322521943202813132028350Ratregion
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5049108RH13329021242851558928515801Ratregion
5049168RH13332419043259910532599295Ratregion
5048128RH132724150454930755493225Ratregion
5039588RH12779221941420367914203898Ratregion
5041990RH12917521043647425836474468Ratregion
5042012RH12918819643051967430519870Ratregion
5047356RH13228018541123888211239067Ratregion
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5049654RH13360521843016160130161819Ratregion
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5043806RH13023819943247180032471999Ratregion
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5507451REN10342226644370815243708418Ratregion
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5507461REN10343124944371029043710539Ratregion
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5507465REN10364425744375707043757327Ratregion
5507467REN10364924144375826343758504Ratregion
5507469REN10365025544375845643758711Ratregion
5507471REN10371124844377273843772986Ratregion
5507473REN10371225144377297043773221Ratregion
5507475REN10401126144382901643829277Ratregion
5507477REN10544323144420869544208926Ratregion
5507481ECD0408080044346120243462003Ratregion
5507485ECD0461276844345295743453725Ratregion
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5507517REN11009122642917747829177704Ratregion
5507519REN11014623742918987729190114Ratregion
5507521REN11045226742925064029250907Ratregion
5507523REN11045324442925089529251139Ratregion
5503402GDB:131729821543459982034600035Ratregion
5503766STS_ADH227543762119337621465Ratregion
5503668Shh260469628216963081Ratregion
5504097px-31e7192458968365897028Ratregion
5504450PMC209527P2155452148955215050Ratregion
5504544PMC30213P213841075542710755743Ratregion
5505496D9S1872780463334676334247Ratregion
5505175Apex118341644583416446017Ratregion
5506264SGC3274752741139955511400082Ratregion
5506354UniSTS:47894812943762091737621046Ratregion
5506630ECD0020294644367803743678983Ratregion
5506636ECD0036191244368001243680924Ratregion
5506652ECD0129888444367903043679914Ratregion
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5506851G4647028943117181631172105Ratregion
5506606DLX5_231669343499909334999786Ratregion
5506620PTPN12_183763141409207514092706Ratregion
5506666ECD0285785144370804743708898Ratregion
5506668ECD0361280344345036943451172Ratregion
5507393REN10220126244344959643449858Ratregion
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5507413REN10223926244345832043458582Ratregion
5507415REN10225625044346192143462171Ratregion
5507417REN10227722944346671443466943Ratregion
5507419REN10227823644346691943467155Ratregion
5507115UniSTS:22458912642149344921493575Ratregion
5507315G4471411443628866136288775Ratregion
5499533stSG61151824444370522043705464Ratregion
5499535stSG611519123744370546943706706Ratregion
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5499531stSG611494109844367904443680142Ratregion
5499543AI85403213242597053825970670Ratregion
5499591D7S3202418498343099834727Ratregion
5500019UniSTS:23617110842947022629470334Ratregion
5499529stSG611484125844366756343668821Ratregion
5500637RH13638319941329675813297339Ratregion
5500242U6688866443316283533163499Ratregion
5500294D20S10048943663525836635347Ratregion
5500310GDB:1803505443258948532590378Ratregion
5500410GDB:5429059543357592433576019Ratregion
5500180MT348240144445596244456363Ratregion
5500336GDB:19474862143775860837759229Ratregion
5500340GDB:19474713143775909837759229Ratregion
5500701RH7977923243663327236633504Ratregion
5500945MARC_9717-9718:996688547:130943500291635003225Ratregion
5501319ECD1552447444432155944322033Ratregion
5501321ECD1582047444414700944147483Ratregion
5501520RHEB24541031961310319858Ratregion
5501550G3315414341058060310580746Ratregion
5501679UniSTS:26567729344182910041829392Ratregion
5501818MARC_13931-13932:1007579490:149044371020443710694Ratregion
5505883Grm36542436503124365096Ratregion
5502684Asb413143351505733515188Ratregion
5502999D5Jcs89137482594138259550Ratregion
5507387REN10186024844339051643390764Ratregion
5507389REN10185626844338968343389951Ratregion
5507391REN10219422544344800643448231Ratregion
5507395REN10220225144344983443450085Ratregion
5507397REN102203044345005743450379Ratregion
5507399REN10220424944345037343450622Ratregion
5507401REN10220830344345127943451582Ratregion
5507403REN10221426444345271243452976Ratregion
5507407REN10221524244345295843453200Ratregion
5507409REN10221825844345359043453848Ratregion
5507411REN10221924444345382943454073Ratregion
5507421REN10258525144352484743525098Ratregion
5507423REN10287525144358848343588734Ratregion
5507425REN10311824244363820543638447Ratregion
5507427REN10315624444364621043646454Ratregion
5507429REN10323824744366816843668415Ratregion
5507431REN10324024944366862143668870Ratregion
5507433REN10326625544367449243674747Ratregion
5507435REN10326524144367425543674496Ratregion
5502455RH12490310041076872310768823Ratregion
5502864Dlx6043498845234989250Ratregion
10755486rs6615076342677559126775591Ratregion
Position Markers

Peak: (D4Rat222)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2422,710,685 - 22,710,908 (+)MAPPER
Rnor_6.0419,618,866 - 19,619,088NCBI
Rnor_5.0419,564,454 - 19,564,676UniSTS
RGSC_v3.4419,044,128 - 19,044,350RGD
RGSC_v3.4419,044,128 - 19,044,350UniSTS
RGSC_v3.1419,044,128 - 19,044,544RGD
Celera418,226,219 - 18,226,441UniSTS
SHRSP x BN Map49.11RGD
SHRSP x BN Map49.11UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Hc2

RGD Curation Notes
Note Type Note Reference
qtl_cross_type intercross  
qtl_general suggestively associates with higher calcium excretion than in the WKY progenitors 631855