Calcr (calcitonin receptor) - Rat Genome Database

Name: Calcr
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Calcr (calcitonin receptor) Rattus norvegicus

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Symbol:

Calcr

Name:

calcitonin receptor

RGD ID:

621001

Description:

Enables calcitonin binding activity and calcitonin receptor activity. Involved in several processes, including adenylate cyclase-modulating G protein-coupled receptor signaling pathway; cellular response to transforming growth factor beta stimulus; and cellular response to tumor necrosis factor. Located in axon and neuronal cell body. Human ortholog(s) of this gene implicated in osteoporosis. Orthologous to human CALCR (calcitonin receptor); INTERACTS WITH ammonium chloride; amphetamine; benzo[a]pyrene.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C1A/C1B; CT-R

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CALCR (calcitonin receptor)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Calcr (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Calcr (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CALCR (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CALCR (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Calcr (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CALCR (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CALCR (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Calcr (calcitonin receptor)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CALCRL (calcitonin receptor like receptor)	HGNC	OrthoDB
Homo sapiens (human):	KATNB1 (katanin regulatory subunit B1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Calcr (calcitonin receptor)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CALCR (calcitonin receptor)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	calcr (calcitonin receptor)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	Dh31-R	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pdfr-1	Alliance	DIOPT (InParanoid\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	hec	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	calcr	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)

Candidate Gene For:

Vie1

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	32,615,955 - 32,691,075 (-)	NCBI		GRCr8
mRatBN7.2	4	31,661,270 - 31,736,392 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	31,661,273 - 31,736,392 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	36,633,979 - 36,709,091 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	32,560,089 - 32,635,205 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	30,919,584 - 30,995,051 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	28,627,439 - 28,702,559 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	28,627,442 - 28,702,559 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	28,532,077 - 28,607,201 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	28,486,176 - 28,561,296 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	28,501,581 - 28,574,979 (-)	NCBI
Celera	4	27,047,821 - 27,123,526 (-)	NCBI		Celera
Cytogenetic Map	4	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Herpes Simplex Encephalitis (IDA)

hypercalcemia (ISO)

osteoporosis (ISO)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2-aminopurine (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

ammonium chloride (EXP)

amphetamine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bisphenol A (EXP,ISO)

chlorpromazine (ISO)

coumestrol (ISO)

cytarabine (ISO)

dibenz[a,h]anthracene (ISO)

ethanol (ISO)

fenvalerate (EXP)

flavonoids (EXP)

fulvestrant (ISO)

gamma-aminobutyric acid (EXP)

genistein (ISO)

GW 4064 (ISO)

kaempferol (ISO)

KN-93 (ISO)

lipopolysaccharide (ISO)

mangiferin (ISO)

naringin (ISO)

paraquat (EXP)

quercetin (ISO)

resveratrol (ISO)

rubiadin (EXP)

sarin (EXP)

silicon dioxide (ISO)

sulforaphane (ISO)

tacrolimus hydrate (ISO)

tetraphene (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adenylate cyclase-activating G protein-coupled receptor signaling pathway (IBA,IEA,ISO)

adenylate cyclase-modulating G protein-coupled receptor signaling pathway (IDA,IEA)

amylin receptor signaling pathway (IEA,ISO)

calcitonin gene-related peptide receptor signaling pathway (ISO)

cell surface receptor signaling pathway (IEA)

cellular response to transforming growth factor beta stimulus (IEP)

cellular response to tumor necrosis factor (IEP)

mononuclear cell differentiation (IEP)

negative regulation of ossification (IEA,ISO)

ossification (IEA,ISO)

osteoclast differentiation (IEA,ISO)

positive regulation of calcium-mediated signaling (IEA,ISO)

positive regulation of cAMP/PKA signal transduction (IEA,ISO)

positive regulation of cytosolic calcium ion concentration (IBA,IEA,ISO)

positive regulation of ERK1 and ERK2 cascade (IEA,ISO)

positive regulation of gene expression (IEA,ISO)

positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction (IEA,ISO)

regulation of bone resorption (ISO)

regulation of mRNA stability (IEA,ISO)

response to amyloid-beta (IEA,ISO)

response to glucocorticoid (IEA,ISO)

Cellular Component

acrosomal vesicle (IEA,ISO)

amylin receptor complex 1 (IEA,ISO)

amylin receptor complex 2 (IEA,ISO)

amylin receptor complex 3 (IEA,ISO)

axon (IBA,IDA)

cilium (IEA,ISO)

neuronal cell body (IDA)

plasma membrane (IBA,IEA)

Molecular Function

amylin receptor activity (IEA,ISO)

amyloid-beta binding (IEA,ISO)

calcitonin binding (IDA,IEA,ISO)

calcitonin gene-related peptide receptor activity (IEA,ISO)

calcitonin receptor activity (IBA,IDA,IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	The calcitonin receptor gene is a candidate for regulation of susceptibility to herpes simplex type 1 neuronal infection leading to encephalitis in rat.	Abdelmagid N, etal., PLoS Pathog. 2012;8(6):e1002753. doi: 10.1371/journal.ppat.1002753. Epub 2012 Jun 28.
2.	Molecular cloning of two receptors from rat brain with high affinity for salmon calcitonin.	Albrandt K, etal., FEBS Lett 1993 Jul 5;325(3):225-32.
3.	Immunohistochemical mapping of calcitonin receptors in the adult rat brain.	Becskei C, etal., Brain Res. 2004 Dec 31;1030(2):221-33.
4.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	Rat ISS GO annotations from GOA human gene data--August 2006	GOA data from the GO Consortium
6.	Divergent structural requirements exist for calcitonin receptor binding specificity and adenylate cyclase activation.	Houssami S, etal., Mol Pharmacol. 1995 Apr;47(4):798-809.
7.	Characterization and identification of subpopulations of mononuclear preosteoclasts induced by TNF-α in combination with TGF-β in rats.	Matsubara R, etal., PLoS One. 2012;7(10):e47930. doi: 10.1371/journal.pone.0047930. Epub 2012 Oct 24.
8.	Rat ISS GO annotations from MGI mouse gene data--August 2006	MGD data from the GO Consortium
9.	Electronic Transfer of LocusLink and RefSeq Data	NCBI rat LocusLink and RefSeq merged data July 26, 2002
10.	A new calcitonin-receptor-like sequence in rat pulmonary blood vessels.	Njuki F, etal., Clin Sci (Lond) 1993 Oct;85(4):385-8.
11.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
12.	Online Mendelian Inheritance in Man, OMIM (TM).	Online Mendelian Inheritance in Man, OMIM (TM).
13.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
14.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
15.	Identification of brain isoforms of the rat calcitonin receptor.	Sexton PM, etal., Mol Endocrinol 1993 Jun;7(6):815-21.
16.	Ontogeny of calcitonin receptor mRNA and protein in the developing central nervous system of the rat.	Tolcos M, etal., J Comp Neurol 2003 Jan 27;456(1):29-38.
17.	Association between osteoporosis and polymorphisms of the bone Gla protein, estrogen receptor 1, collagen 1-A1 and calcitonin receptor genes in Turkish postmenopausal women.	Tural S, etal., Gene. 2013 Feb 15;515(1):167-72. doi: 10.1016/j.gene.2012.10.041. Epub 2012 Nov 5.

Additional References at PubMed

PMID:796748	PMID:4961748	PMID:7588285	PMID:7619207	PMID:7664679	PMID:7769107	PMID:7961748	PMID:7988453	PMID:8078488	PMID:9002981	PMID:9753683	PMID:10882736
PMID:11250927	PMID:12631107	PMID:12704735	PMID:14715154	PMID:14722252	PMID:14970190	PMID:15563840	PMID:15670850	PMID:18599553	PMID:22500019	PMID:24516262	PMID:24801386

Genomics

Comparative Map Data

Calcr
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	32,615,955 - 32,691,075 (-)	NCBI		GRCr8
mRatBN7.2	4	31,661,270 - 31,736,392 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	31,661,273 - 31,736,392 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	36,633,979 - 36,709,091 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	32,560,089 - 32,635,205 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	30,919,584 - 30,995,051 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	28,627,439 - 28,702,559 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	28,627,442 - 28,702,559 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	28,532,077 - 28,607,201 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	28,486,176 - 28,561,296 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	4	28,501,581 - 28,574,979 (-)	NCBI
Celera	4	27,047,821 - 27,123,526 (-)	NCBI		Celera
Cytogenetic Map	4	q13	NCBI

CALCR
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	93,424,486 - 93,574,724 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	93,424,486 - 93,574,730 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	93,053,798 - 93,204,036 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	92,891,735 - 93,041,686 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	7	92,698,449 - 92,848,401	NCBI
Celera	7	87,758,299 - 87,908,414 (-)	NCBI		Celera
Cytogenetic Map	7	q21.3	NCBI
HuRef	7	87,664,656 - 87,814,674 (-)	NCBI		HuRef
CHM1_1	7	92,983,802 - 93,134,094 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	94,666,953 - 94,817,060 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	92,383,112 - 92,533,218 (-)	NCBI

Calcr
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	3,685,678 - 3,764,713 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	3,685,680 - 3,764,714 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	3,685,678 - 3,764,713 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	3,685,680 - 3,764,714 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	3,635,720 - 3,714,713 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	3,635,734 - 3,718,616 (-)	NCBI		MGSCv36	mm8
Celera	6	3,838,106 - 3,917,223 (-)	NCBI		Celera
Cytogenetic Map	6	A1	NCBI
cM Map	6	1.81	NCBI

Calcr
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955432	10,309,263 - 10,391,141 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955432	10,310,776 - 10,391,029 (-)	NCBI	ChiLan1.0	ChiLan1.0

CALCR
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	111,269,609 - 111,419,724 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	159,534,252 - 159,684,366 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	85,382,167 - 85,532,562 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	98,975,906 - 99,125,841 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	98,975,906 - 99,047,162 (-)	Ensembl	panpan1.1		panPan2

CALCR
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	18,923,116 - 19,074,904 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	18,923,116 - 19,074,904 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	18,482,050 - 18,633,756 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	18,730,002 - 18,888,306 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	18,729,945 - 18,888,301 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	18,889,119 - 19,040,277 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	18,624,883 - 18,776,465 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	18,875,566 - 19,033,608 (-)	NCBI		UU_Cfam_GSD_1.0

Calcr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	32,331,279 - 32,443,389 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936803	422,890 - 466,730 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936803	423,558 - 466,762 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CALCR
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	73,279,879 - 73,403,436 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	73,279,874 - 73,403,516 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	80,112,418 - 80,234,372 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3
Pig Cytomap	9	q11-q12	NCBI

CALCR
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	55,433,438 - 55,585,608 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	55,523,412 - 55,583,735 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	48,721,181 - 48,873,559 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Calcr
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624813	233,042 - 357,396 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624813	233,117 - 357,507 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Calcr
242 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	1120
Count of miRNA genes:	266
Interacting mature miRNAs:	333
Transcripts:	ENSRNOT00000013910, ENSRNOT00000013937
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	57114705	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	14678065	59678065	Rat
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	31934116	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	31934116	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	10084089	55084089	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	33250345	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	33250345	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	10084089	55084089	Rat
70222	Eae2	Experimental allergic encephalomyelitis QTL 2	4.3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	4	21333343	39505420	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5219178	56647776	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	10084089	55084089	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
634323	Hc2	Hypercalciuria QTL 2	2.15		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	4	210796	45210796	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	17933508	62933508	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	9940885	44463908	Rat
8552803	Bw144	Body weight QTL 144	16		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	22710685	34430484	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	26907285	75585128	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	10084089	55084089	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	31934116	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	21333343	62278020	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	10084089	55084089	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	29494195	81006281	Rat
61415	Eae11	Experimental allergic encephalomyelitis QTL 11	2.9		nervous system integrity trait (VT:0010566)	post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)	4	1	39505420	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5214602	78882945	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	26907285	75585128	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	32584199	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	65958103	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	10084089	55084089	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	31934116	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
1354665	Stl10	Serum triglyceride level QTL 10	3.57		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21333343	44463908	Rat
1300141	Bp178	Blood pressure QTL 178			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	10024901	39524530	Rat

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium							87
Low					18	18	131	106	30		18
Below cutoff	50	22	6	22	18	27	30	9	79	45	6

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034015	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_053816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC129670	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB791100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L13040	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L13041	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L14617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	L14618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	X70669	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013910 ⟹ ENSRNOP00000013910

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	31,661,273 - 31,736,392 (-)	Ensembl
Rnor_6.0 Ensembl	4	28,627,442 - 28,702,559 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000013937 ⟹ ENSRNOP00000013937

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	31,661,273 - 31,736,392 (-)	Ensembl
Rnor_6.0 Ensembl	4	28,627,442 - 28,702,559 (-)	Ensembl

RefSeq Acc Id:

NM_001034015 ⟹ NP_001029187

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	32,615,955 - 32,691,075 (-)	NCBI
mRatBN7.2	4	31,661,270 - 31,736,392 (-)	NCBI
Rnor_6.0	4	28,627,439 - 28,702,559 (-)	NCBI
Rnor_5.0	4	28,532,077 - 28,607,201 (-)	NCBI
RGSC_v3.4	4	28,486,176 - 28,561,296 (-)	RGD
Celera	4	27,047,821 - 27,123,526 (-)	RGD

Sequence:

show sequence

AGCAGAGGCAGGCTCTGCAAGGAGAGCCAGTGGCCCAAGCCCCTGGACGGACTGCAGCTTGCAG
ACAACTCCTGGTTGGAGAGGTGCTTCTGCACCTCACTCTGAGGTTGGCACCCCCTGCCCAGTGA
AGTCTGAGTTCCTGAGACATCCAGCTAGAGAATTCCTGCGTCCACCTAAGGTAAGTGCCATTCC
ACACAAGAGGAAACCGAGGGAGCACGGCTTCTGAACAGCGGATCTGAAAATGACTCCACGGAGA
TCCAGAATGAAAAGGCGGAACCTCCGAAAACCGAAGATGAGGTTCCTTCTCCTGAACAGGTTCA
CCCTGCTGCTCCTGCTCCTAGTGAGCCCTACTCCAGTTCTTCAGGCTCCTACCAATCTCACTGA
CTCCGGCCTTGATCAGGAGCCATTCCTGTACTTGGTTGGACGCAAGAAGCTTCTGGATGCTCAG
TACAAGTGCTATGACCGGATTCAGCAGTTGCCCCCTTATGAGGGAGAAGGTCCATATTGCAACC
GAACTTGGGATGGATGGATGTGCTGGGACGACACTCCAGCTGGTGTAATGTCCTATCAGCACTG
CCCTGACTACTTTCCGGACTTTGACCCAACAGAAAAGGTTTCAAAATACTGCGATGAAAATGGA
GAGTGGTTTAGACACCCTGACAGCAACCGAACCTGGTCCAACTACACTCTGTGCAATGCCTTCA
CTCCTGACAAACTGCATAATGCATACGTTCTTTATTACCTAGCACTTGTGGGCCACTCCATGTC
AATTGCTGCTCTGATTGCTTCCATGGGGATCTTCTTGTTTTTCAAGAACCTTAGCTGCCAGAGA
GTGACTCTGCACAAGAACATGTTCCTCACTTATATCCTGAACTCTATCATTATCATCATCCACC
TGGTTGAGGTTGTGCCCAATGGAGACCTGGTGCGACGGGATCCTATAAGTTGCAAGATTCTGCA
CTTTTTCCATCAGTACATGATGGCTTGCAACTACTTCTGGATGCTGTGTGAGGGGATCTATCTT
CACACTCTGATCGTCATGGCTGTGTTCACCGAGGATCAACGTCTGCGCTGGTACTATTTACTTG
GCTGGGGGTTCCCAATAGTGCCAACTATTATCCATGCCATTACTCGTGCCGTCTACTACAACGA
CAACTGTTGGCTGAGTACGGAGACCCACTTGCTTTACATCATCCATGGACCCGTCATGGCGGCT
CTGGTGGTCAACTTCTTCTTTCTGCTCAACATTGTCCGTGTGCTTGTGACCAAGATGAGGCAAA
CCCATGAAGCCGAGGCCTACATGTACCTGAAGGCTGTAAAGGCCACCATGGTCCTTGTGCCCCT
GCTGGGGATCCAGTTTGTTGTGTTTCCCTGGAGGCCCTCCAACAAAGTGCTTGGGAAGATCTAT
GATTATCTCATGCACTCTCTGATTCATTTCCAGGGATTCTTTGTCGCGACTATCTACTGCTTCT
GTAACCATGAGGTGCAAGTGACCCTGAAGCGTCAGTGGGCGCAGTTCAAGATCCAGTGGAGCCA
TCGCTGGGGTAGGCGCCGCCGCCCCACCAACCGAGTGGTTAGCGCTCCTCGTGCTGTAGCCTTT
GCAGAACCAGGTGGCCTCCCCATTTACATCTGCCATCAGGAACCAAGGAATCCTCCAGTCAGCA
ACAACGAAGGCGAAGAGGGTACTGAAATGATCCCCATGAATGTCATCCAGCAAGACTCATCCGC
TTGAATGCTTGAATGTGAAGCAACCCCCCAACATTGTGATCCACTGAGCCTTCATTTCCTGGGA
GAACGATAGACCATGCGTTTCAAGTGATCCCCATCCTCCCAGGAGCTAAGCATATCATTTGTGA
AGATGTATTAAGTGAATTTGTCCATAGTGAATTTGAAGAACGTTATTCTTGGTACTATTGCTTT
GGGAGTCAGGCTAGGCTCTCAGTGCAACTTGTGAACTCCATTATTCATCTAGGACTGAGATGAC
AGTGTTCATAGGAATGTAGACAAGGTATCCAAAACTGCCACTAAATTGACCTAGTTCAGATAAG
GGTGCTCCATGTTAATCTTGAGCCATTTGTACCTTTGAGAAACTAAAATCACTCTCAATGTTTT
TAATTTTAACACTGGACTTTGAATTAGACTATTTCTGTATTTGGCTACGGATCTGGTTTTTAAT
GTTTTTATTTCAGTCAATTCCTATATTGCACATTTTTTCATCCATACAATGTCAACTGCACAAA
TAACATGACCTCTGGAAGATGCTGTGTCTTTTATAACATGATCCACGTCACCAGGCAGACCCAA
ATACTGTAAAGAATTGATCTGAATGTTGAGTGTGCTTTGGTCACTGACATTTATAAATTGGGAG
GTCATCAAGAACCTATCACTAAATTTTTCACAAAACTGACCCCCCTCAAATGTAATTTTCCATC
AAAGAGAACACTCTTTAAAGATAGTTTTCCACTTTCCTAAACTACAGGATTTATAAAGCAAATC
ATTCCAAGGTTTATAAAGCAGATTACCTCTTGCCCTTGGGTGCTATTTAGCAGTGAGGGATAGA
TTTGTTTACGACTGGTAATTAAAAGACTCCATTCAAGTCCATTAACTGCCTTCCACCCAGCTTC
AAAGCTTGACAAGATCCCGTGTTTTCCAGGAAGACTCAGTGTGGCTAATTACAAATCAGTTTCT
AGTTGACCTCTTGTTTGCTTCTATTAGCAAAACAAGGAGGGAAAAAAGCAAACCACAATGTAAG
GACTTGGAGTTTAACCACATATTAGTTCATCTTAAATTAAAGACAAGCTTCTCACCAAAACTCA
GTACCATATTTCCACGCCTCTCTTTACTCCCCAGAATGAGATCTTCCAAGATCCACAAATAAAC
CAATACCATTACCAATTTCTGAATCTGCAACTGCAATCAATTATCATTATTAATTTGTATGCTG
AATGAGACGCATCCTTGAGACCCTTAAAAATCTCATCTCCTCTTTGTCATCTTGTGTCACTGCC
TTTCAGAGGTGATTTAGTTGCGTAAAAACAAAAGTAACTTGATTTGTTCTGGTTACGTACTTGG
TGCACCCAGAGAAAATTGTATTTCGCTAGCAGCTGTGGCCCTTGGATACTGAGAGTCTCCTTTA
CCAAAATGGGAGAATTGAAAGGAAGGATTTTTTTTCCAATCACAGTGTTACGTGGTGATGTTCC
CATGTTTTGTTTACAAACATTGAAATCAGTGTATTTCAGGCAGCTCTGGTACAAATGTGATAGT
GTATTGCTGAAGTGTTTGAGACGTTATTGTGCTTCTGTAGTAGGGGCTGATGAAATCAAACTGA
CTTATCATAGCATTGCATGTAATACCTAAATTGTGTGAAACACTTCTTCTGTGTACTTGTATAA
ATTAATACAAGCATGTTGAAAAGGCAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_053816 ⟹ NP_446268

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	32,615,955 - 32,691,075 (-)	NCBI
mRatBN7.2	4	31,661,270 - 31,736,392 (-)	NCBI
Rnor_6.0	4	28,627,439 - 28,702,559 (-)	NCBI
Rnor_5.0	4	28,532,077 - 28,607,201 (-)	NCBI
RGSC_v3.4	4	28,486,176 - 28,561,296 (-)	RGD
Celera	4	27,047,821 - 27,123,526 (-)	RGD

Sequence:

show sequence

AGCAGAGGCAGGCTCTGCAAGGAGAGCCAGTGGCCCAAGCCCCTGGACGGACTGCAGCTTGCAG
ACAACTCCTGGTTGGAGAGGTGCTTCTGCACCTCACTCTGAGGTTGGCACCCCCTGCCCAGTGA
AGTCTGAGTTCCTGAGACATCCAGCTAGAGAATTCCTGCGTCCACCTAAGGTAAGTGCCATTCC
ACACAAGAGGAAACCGAGGGAGCACGGCTTCTGAACAGCGGATCTGAAAATGACTCCACGGAGA
TCCAGAATGAAAAGGCGGAACCTCCGAAAACCGAAGATGAGGTTCCTTCTCCTGAACAGGTTCA
CCCTGCTGCTCCTGCTCCTAGTGAGCCCTACTCCAGTTCTTCAGGCTCCTACCAATCTCACTGA
CTCCGGCCTTGATCAGGAGCCATTCCTGTACTTGGTTGGACGCAAGAAGCTTCTGGATGCTCAG
TACAAGTGCTATGACCGGATTCAGCAGTTGCCCCCTTATGAGGGAGAAGGTCCATATTGCAACC
GAACTTGGGATGGATGGATGTGCTGGGACGACACTCCAGCTGGTGTAATGTCCTATCAGCACTG
CCCTGACTACTTTCCGGACTTTGACCCAACAGAAAAGGTTTCAAAATACTGCGATGAAAATGGA
GAGTGGTTTAGACACCCTGACAGCAACCGAACCTGGTCCAACTACACTCTGTGCAATGCCTTCA
CTCCTGACAAACTGCATAATGCATACGTTCTTTATTACCTAGCACTTGTGGGCCACTCCATGTC
AATTGCTGCTCTGATTGCTTCCATGGGGATCTTCTTGTTTTTCAAGAACCTTAGCTGCCAGAGA
GTGACTCTGCACAAGAACATGTTCCTCACTTATATCCTGAACTCTATCATTATCATCATCCACC
TGGTTGAGGTTGTGCCCAATGGAGACCTGGTGCGACGGGATCCTATGCATATTTTTCATCATAA
CACATATATGTGGACAATGCAGTGGGAACTGTCACCACCCTTACCCCTGAGTGCACACGAGGGA
AAGATGGACCCTCATGACAGTGAAGTGATAAGTTGCAAGATTCTGCACTTTTTCCATCAGTACA
TGATGGCTTGCAACTACTTCTGGATGCTGTGTGAGGGGATCTATCTTCACACTCTGATCGTCAT
GGCTGTGTTCACCGAGGATCAACGTCTGCGCTGGTACTATTTACTTGGCTGGGGGTTCCCAATA
GTGCCAACTATTATCCATGCCATTACTCGTGCCGTCTACTACAACGACAACTGTTGGCTGAGTA
CGGAGACCCACTTGCTTTACATCATCCATGGACCCGTCATGGCGGCTCTGGTGGTCAACTTCTT
CTTTCTGCTCAACATTGTCCGTGTGCTTGTGACCAAGATGAGGCAAACCCATGAAGCCGAGGCC
TACATGTACCTGAAGGCTGTAAAGGCCACCATGGTCCTTGTGCCCCTGCTGGGGATCCAGTTTG
TTGTGTTTCCCTGGAGGCCCTCCAACAAAGTGCTTGGGAAGATCTATGATTATCTCATGCACTC
TCTGATTCATTTCCAGGGATTCTTTGTCGCGACTATCTACTGCTTCTGTAACCATGAGGTGCAA
GTGACCCTGAAGCGTCAGTGGGCGCAGTTCAAGATCCAGTGGAGCCATCGCTGGGGTAGGCGCC
GCCGCCCCACCAACCGAGTGGTTAGCGCTCCTCGTGCTGTAGCCTTTGCAGAACCAGGTGGCCT
CCCCATTTACATCTGCCATCAGGAACCAAGGAATCCTCCAGTCAGCAACAACGAAGGCGAAGAG
GGTACTGAAATGATCCCCATGAATGTCATCCAGCAAGACTCATCCGCTTGAATGCTTGAATGTG
AAGCAACCCCCCAACATTGTGATCCACTGAGCCTTCATTTCCTGGGAGAACGATAGACCATGCG
TTTCAAGTGATCCCCATCCTCCCAGGAGCTAAGCATATCATTTGTGAAGATGTATTAAGTGAAT
TTGTCCATAGTGAATTTGAAGAACGTTATTCTTGGTACTATTGCTTTGGGAGTCAGGCTAGGCT
CTCAGTGCAACTTGTGAACTCCATTATTCATCTAGGACTGAGATGACAGTGTTCATAGGAATGT
AGACAAGGTATCCAAAACTGCCACTAAATTGACCTAGTTCAGATAAGGGTGCTCCATGTTAATC
TTGAGCCATTTGTACCTTTGAGAAACTAAAATCACTCTCAATGTTTTTAATTTTAACACTGGAC
TTTGAATTAGACTATTTCTGTATTTGGCTACGGATCTGGTTTTTAATGTTTTTATTTCAGTCAA
TTCCTATATTGCACATTTTTTCATCCATACAATGTCAACTGCACAAATAACATGACCTCTGGAA
GATGCTGTGTCTTTTATAACATGATCCACGTCACCAGGCAGACCCAAATACTGTAAAGAATTGA
TCTGAATGTTGAGTGTGCTTTGGTCACTGACATTTATAAATTGGGAGGTCATCAAGAACCTATC
ACTAAATTTTTCACAAAACTGACCCCCCTCAAATGTAATTTTCCATCAAAGAGAACACTCTTTA
AAGATAGTTTTCCACTTTCCTAAACTACAGGATTTATAAAGCAAATCATTCCAAGGTTTATAAA
GCAGATTACCTCTTGCCCTTGGGTGCTATTTAGCAGTGAGGGATAGATTTGTTTACGACTGGTA
ATTAAAAGACTCCATTCAAGTCCATTAACTGCCTTCCACCCAGCTTCAAAGCTTGACAAGATCC
CGTGTTTTCCAGGAAGACTCAGTGTGGCTAATTACAAATCAGTTTCTAGTTGACCTCTTGTTTG
CTTCTATTAGCAAAACAAGGAGGGAAAAAAGCAAACCACAATGTAAGGACTTGGAGTTTAACCA
CATATTAGTTCATCTTAAATTAAAGACAAGCTTCTCACCAAAACTCAGTACCATATTTCCACGC
CTCTCTTTACTCCCCAGAATGAGATCTTCCAAGATCCACAAATAAACCAATACCATTACCAATT
TCTGAATCTGCAACTGCAATCAATTATCATTATTAATTTGTATGCTGAATGAGACGCATCCTTG
AGACCCTTAAAAATCTCATCTCCTCTTTGTCATCTTGTGTCACTGCCTTTCAGAGGTGATTTAG
TTGCGTAAAAACAAAAGTAACTTGATTTGTTCTGGTTACGTACTTGGTGCACCCAGAGAAAATT
GTATTTCGCTAGCAGCTGTGGCCCTTGGATACTGAGAGTCTCCTTTACCAAAATGGGAGAATTG
AAAGGAAGGATTTTTTTTCCAATCACAGTGTTACGTGGTGATGTTCCCATGTTTTGTTTACAAA
CATTGAAATCAGTGTATTTCAGGCAGCTCTGGTACAAATGTGATAGTGTATTGCTGAAGTGTTT
GAGACGTTATTGTGCTTCTGTAGTAGGGGCTGATGAAATCAAACTGACTTATCATAGCATTGCA
TGTAATACCTAAATTGTGTGAAACACTTCTTCTGTGTACTTGTATAAATTAATACAAGCATGTT
GAAAAGGCAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001029187	(Get FASTA)	NCBI Sequence Viewer
	NP_446268	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA03030	(Get FASTA)	NCBI Sequence Viewer
	AAA03031	(Get FASTA)	NCBI Sequence Viewer
	AAA65964	(Get FASTA)	NCBI Sequence Viewer
	AAA65965	(Get FASTA)	NCBI Sequence Viewer
	EDL84385	(Get FASTA)	NCBI Sequence Viewer
	EDL84386	(Get FASTA)	NCBI Sequence Viewer
	EDL84387	(Get FASTA)	NCBI Sequence Viewer
	EDL84388	(Get FASTA)	NCBI Sequence Viewer
	EDL84389	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000013910.6
	ENSRNOP00000013937.6
GenBank Protein	P32214	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001029187 ⟸ NM_001034015
- Peptide Label:	isoform 1a precursor
- UniProtKB:	A0A0H2UHI3 (UniProtKB/TrEMBL), A6K2A3 (UniProtKB/TrEMBL), A6K2A6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTPRRSRMKRRNLRKPKMRFLLLNRFTLLLLLLVSPTPVLQAPTNLTDSGLDQEPFLYLVGRKK LLDAQYKCYDRIQQLPPYEGEGPYCNRTWDGWMCWDDTPAGVMSYQHCPDYFPDFDPTEKVSKY CDENGEWFRHPDSNRTWSNYTLCNAFTPDKLHNAYVLYYLALVGHSMSIAALIASMGIFLFFKN LSCQRVTLHKNMFLTYILNSIIIIIHLVEVVPNGDLVRRDPISCKILHFFHQYMMACNYFWMLC EGIYLHTLIVMAVFTEDQRLRWYYLLGWGFPIVPTIIHAITRAVYYNDNCWLSTETHLLYIIHG PVMAALVVNFFFLLNIVRVLVTKMRQTHEAEAYMYLKAVKATMVLVPLLGIQFVVFPWRPSNKV LGKIYDYLMHSLIHFQGFFVATIYCFCNHEVQVTLKRQWAQFKIQWSHRWGRRRRPTNRVVSAP RAVAFAEPGGLPIYICHQEPRNPPVSNNEGEEGTEMIPMNVIQQDSSA hide sequence

RefSeq Acc Id:	NP_446268 ⟸ NM_053816
- Peptide Label:	isoform 1b precursor
- UniProtKB:	P32213 (UniProtKB/Swiss-Prot), P32214 (UniProtKB/Swiss-Prot), A0A0H2UHI1 (UniProtKB/TrEMBL), A6K2A4 (UniProtKB/TrEMBL), A6K2A7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTPRRSRMKRRNLRKPKMRFLLLNRFTLLLLLLVSPTPVLQAPTNLTDSGLDQEPFLYLVGRKK LLDAQYKCYDRIQQLPPYEGEGPYCNRTWDGWMCWDDTPAGVMSYQHCPDYFPDFDPTEKVSKY CDENGEWFRHPDSNRTWSNYTLCNAFTPDKLHNAYVLYYLALVGHSMSIAALIASMGIFLFFKN LSCQRVTLHKNMFLTYILNSIIIIIHLVEVVPNGDLVRRDPMHIFHHNTYMWTMQWELSPPLPL SAHEGKMDPHDSEVISCKILHFFHQYMMACNYFWMLCEGIYLHTLIVMAVFTEDQRLRWYYLLG WGFPIVPTIIHAITRAVYYNDNCWLSTETHLLYIIHGPVMAALVVNFFFLLNIVRVLVTKMRQT HEAEAYMYLKAVKATMVLVPLLGIQFVVFPWRPSNKVLGKIYDYLMHSLIHFQGFFVATIYCFC NHEVQVTLKRQWAQFKIQWSHRWGRRRRPTNRVVSAPRAVAFAEPGGLPIYICHQEPRNPPVSN NEGEEGTEMIPMNVIQQDSSA hide sequence

Ensembl Acc Id:

ENSRNOP00000013937 ⟸ ENSRNOT00000013937

Ensembl Acc Id:

ENSRNOP00000013910 ⟸ ENSRNOT00000013910

Protein Domains

G-protein coupled receptors family 2 profile

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-P32214-F1-model_v2	AlphaFold	P32214	1-516	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:621001	AgrOrtholog
BioCyc Gene	G2FUF-45737	BioCyc
Ensembl Genes	ENSRNOG00000010053	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000013910.8	UniProtKB/TrEMBL
	ENSRNOT00000013937.6	UniProtKB/TrEMBL
Gene3D-CATH	4.10.1240.10	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Rhodopsin 7-helix transmembrane proteins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	GCPR_2_calcitonin_rcpt_fam	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_calcitonin_rcpt	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_extracell_dom_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_extracellular_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_secretin-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCR_2_secretin-like_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:116506	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene	116506	ENTREZGENE
PANTHER	PDF RECEPTOR-LIKE PROTEIN-RELATED	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR45620:SF8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	7tm_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	HRM	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Calcr	PhenoGen
PRINTS	CALCITONINR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CTRFAMILY	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GPCRSECRETIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	G_PROTEIN_RECEP_F2_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_3	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	G_PROTEIN_RECEP_F2_4	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010053	RatGTEx
SMART	HormR	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	Family A G protein-coupled receptor-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF111418	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0H2UHI1	ENTREZGENE, UniProtKB/TrEMBL
	A0A0H2UHI3	ENTREZGENE, UniProtKB/TrEMBL
	A6K2A3	ENTREZGENE, UniProtKB/TrEMBL
	A6K2A4	ENTREZGENE, UniProtKB/TrEMBL
	A6K2A6	ENTREZGENE, UniProtKB/TrEMBL
	A6K2A7	ENTREZGENE, UniProtKB/TrEMBL
	CALCR_RAT	UniProtKB/Swiss-Prot
	P32213	ENTREZGENE
	P32214	ENTREZGENE
UniProt Secondary	P32213	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2004-09-10	Calcr	calcitonin receptor			Symbol and Name status set to approved	1299863	APPROVED
2002-08-07	Calcr	calcitonin receptor			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM