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Gene: Sema3d (semaphorin 3D) Rattus norvegicus
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Symbol: Sema3d
Name: semaphorin 3D
Description: Predicted to have chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Predicted to be involved in several processes, including generation of neurons; neural crest cell migration; and semaphorin-plexin signaling pathway. Predicted to localize to the extracellular space and integral component of plasma membrane. Orthologous to human SEMA3D (semaphorin 3D); INTERACTS WITH (RS)-amphetamine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: LOC246262; sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D; semaphorin homolog of the avian Sema3D; semaphorin, homolog of the avian Sema3D; semaphorin-3D
Orthologs:
Homo sapiens (human) : SEMA3D (semaphorin 3D)  HGNC  Alliance
Mus musculus (house mouse) : Sema3d (sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Sema3d (semaphorin 3D)
Pan paniscus (bonobo/pygmy chimpanzee) : SEMA3D (semaphorin 3D)
Canis lupus familiaris (dog) : SEMA3D (semaphorin 3D)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Sema3d (semaphorin 3D)
Sus scrofa (pig) : SEMA3D (semaphorin 3D)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0419,224,378 - 19,413,519 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0419,169,059 - 19,359,164 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4418,641,725 - 18,832,339 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1418,657,541 - 18,695,693 (-)NCBI
Celera417,832,750 - 18,021,791 (-)NCBICelera
Cytogenetic Map4q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)
Damaging Variants

Additional Information

External Database Links
Nomenclature History
 
More on Sema3d
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 727939
Created: 2003-11-05
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.