Crot (carnitine O-octanoyltransferase)

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Gene: Crot (carnitine O-octanoyltransferase) Rattus norvegicus

Analyze

Symbol:

Crot

Name:

carnitine O-octanoyltransferase

RGD ID:

70908

Description:

Exhibits carnitine O-octanoyltransferase activity. Involved in response to drug and response to organonitrogen compound. Localizes to peroxisome. Orthologous to human CROT (carnitine O-octanoyltransferase); PARTICIPATES IN adrenoleukodystrophy pathway; carnitine-acylcarnitine translocase deficiency; fatty acid beta degradation pathway; INTERACTS WITH (+)-schisandrin B; 1-naphthyl isothiocyanate; 2,2',4,4'-Tetrabromodiphenyl ether.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

COT; peroxisomal carnitine O-octanoyltransferase

RGD Orthologs

Human

Mouse

Chinchilla

Bonobo

Dog

Squirrel

Pig

Green Monkey

Naked Mole-Rat

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CROT (carnitine O-octanoyltransferase)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Crot (carnitine O-octanoyltransferase)	HGNC	Treefam, EggNOG, NCBI, OMA, HomoloGene, Inparanoid, Panther, OrthoDB, Ensembl
Chinchilla lanigera (long-tailed chinchilla):	Crot (carnitine O-octanoyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CROT (carnitine O-octanoyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CROT (carnitine O-octanoyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Crot (carnitine O-octanoyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CROT (carnitine O-octanoyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (African green monkey):	CROT (carnitine O-octanoyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Crot (carnitine O-octanoyltransferase)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	CROT (carnitine O-octanoyltransferase)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Mus musculus (house mouse):	Crot (carnitine O-octanoyltransferase)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Danio rerio (zebrafish):	crot (carnitine O-octanoyltransferase)	Alliance	DIOPT (PhylomeDB\|TreeFam)
Saccharomyces cerevisiae (baker's yeast):	CAT2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|TreeFam)
Drosophila melanogaster (fruit fly):	CG12428	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	F41E7.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)
Caenorhabditis elegans (roundworm):	T20B3.1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	25,068,270 - 25,133,111 (+)	NCBI
Rnor_6.0 Ensembl	4	22,081,604 - 22,116,265 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	22,079,837 - 22,116,265 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	22,018,106 - 22,053,087 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	22,023,913 - 22,067,029 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	22,023,912 - 22,067,029 (-)	NCBI
Celera	4	20,575,938 - 20,626,257 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Left Ventricular Hypertrophy (IEP)

pleomorphic xanthoastrocytoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

(-)-epigallocatechin 3-gallate (ISO)

1,1-dichloroethene (ISO)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,6-dinitrotoluene (EXP)

2-hydroxypropanoic acid (ISO)

3,3',4,4',5-pentachlorobiphenyl (EXP)

3H-1,2-dithiole-3-thione (EXP)

4,4'-diaminodiphenylmethane (EXP)

4-hydroxynon-2-enal (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

9-cis-retinoic acid (EXP)

aflatoxin B1 (ISO)

amiodarone (ISO)

ammonium chloride (EXP)

arsane (ISO)

arsenic atom (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

Benzo[k]fluoranthene (ISO)

beta-naphthoflavone (EXP)

bexarotene (EXP)

bezafibrate (EXP)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP)

cisplatin (ISO)

clofibrate (EXP,ISO)

clofibric acid (EXP)

cobalt dichloride (EXP)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

deoxycholic acid (ISO)

dibenz[a,h]anthracene (ISO)

dichloroacetic acid (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (EXP)

flutamide (EXP)

formaldehyde (ISO)

furan (EXP)

gentamycin (EXP)

glafenine (EXP)

indometacin (EXP)

lithocholic acid (ISO)

maneb (ISO)

metformin (EXP)

methapyrilene (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

N-nitrosodiethylamine (EXP)

nefazodone (EXP)

nimesulide (EXP)

O-octanoylcarnitine (ISO)

p-toluidine (EXP)

paracetamol (ISO)

paraquat (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (EXP)

perfluorooctanoic acid (EXP,ISO)

phenformin (EXP)

phenobarbital (EXP,ISO)

phenylmercury acetate (ISO)

pirinixic acid (EXP,ISO)

potassium chromate (ISO)

potassium dichromate (ISO)

pregnenolone 16alpha-carbonitrile (EXP,ISO)

propiconazole (ISO)

rac-lactic acid (ISO)

resveratrol (EXP)

ritonavir (EXP)

rotenone (EXP,ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sodium arsenite (EXP)

streptozocin (EXP)

Tesaglitazar (EXP)

tetrachloroethene (ISO)

tetrachloromethane (EXP,ISO)

tetracycline (ISO)

thioacetamide (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (EXP)

valproic acid (EXP,ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carnitine metabolic process (IEA,ISO,ISS)

coenzyme A metabolic process (IEA,ISO,ISS)

fatty acid beta-oxidation (IEA,ISO)

fatty acid metabolic process (ISO,ISS)

fatty acid transport (IEA,ISO)

generation of precursor metabolites and energy (IEA,ISO,ISS)

long-chain fatty acid transport (TAS)

medium-chain fatty acid metabolic process (IEA,ISO,ISS)

medium-chain fatty acid transport (TAS)

response to drug (IDA)

response to organonitrogen compound (IEP)

Cellular Component

intracellular membrane-bounded organelle (ISO)

mitochondrial matrix (IEA)

peroxisome (IBA,IDA,IEA,ISO)

Molecular Function

carnitine O-octanoyltransferase activity (IBA,IDA,IEA,ISO,TAS)

protein binding (ISO)

transferase activity, transferring acyl groups (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

adrenoleukodystrophy pathway (ISO)

carnitine-acylcarnitine translocase deficiency (ISO)

fatty acid beta degradation pathway (ISO)

References

References - curated


1.	Chatterjee B, etal., Biochemistry 1988 Dec 13;27(25):9000-6.
2.	Choi SJ, etal., Biochim Biophys Acta 1995 Nov 7;1264(2):215-22.
3.	Ferdinandusse S, etal., Biochem Biophys Res Commun. 1999 Sep 16;263(1):213-8.
4.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
5.	GOA data from the GO Consortium
6.	KEGG
7.	Li P, etal., Cell Mol Life Sci. 2003 Oct;60(10):2200-9.
8.	MGD Curation, June 12, 2002
9.	MGD data from the GO Consortium
10.	Miyazawa S, etal., J Biochem. 1983 Aug;94(2):529-42.
11.	Morillas M, etal., Biochem J. 2000 Oct 15;351 Pt 2:495-502.
12.	Morillas M, etal., J Biol Chem 2002 Mar 29;277(13):11473-80.
13.	NCBI rat LocusLink and RefSeq merged data July 26, 2002
14.	Pipeline to import SMPDB annotations from SMPDB into RGD
15.	RGD automated data pipeline
16.	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
17.	RGD automated import pipeline for gene-chemical interactions
18.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:6436243	PMID:11553629	PMID:15155769	PMID:15492013	PMID:18614015	PMID:20178365	PMID:21619872

Genomics

Comparative Map Data

Crot
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	4	25,068,270 - 25,133,111 (+)	NCBI
Rnor_6.0 Ensembl	4	22,081,604 - 22,116,265 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_6.0	4	22,079,837 - 22,116,265 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	22,018,106 - 22,053,087 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	22,023,913 - 22,067,029 (-)	NCBI	RGSC3.4		rn4	RGSC3.4
RGSC_v3.1	4	22,023,912 - 22,067,029 (-)	NCBI
Celera	4	20,575,938 - 20,626,257 (+)	NCBI		Celera
Cytogenetic Map	4	q12	NCBI

CROT
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38.p13 Ensembl	7	87,345,664 - 87,399,794 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38.p13 Ensembl	7	87,345,681 - 87,399,795 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh38	7	87,345,646 - 87,399,794 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh37	7	86,974,980 - 87,029,110 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	86,812,947 - 86,867,045 (+)	NCBI	NCBI36		hg18	NCBI36
Build 34	7	86,619,661 - 86,673,760	NCBI
Celera	7	81,679,821 - 81,733,990 (+)	NCBI
Cytogenetic Map	7	q21.12	NCBI
HuRef	7	81,585,930 - 81,640,108 (+)	NCBI		HuRef
CHM1_1	7	86,905,052 - 86,959,218 (+)	NCBI		CHM1_1
CRA_TCAGchr7v2	7	86,306,455 - 86,360,622 (+)	NCBI

Crot
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	9,016,033 - 9,047,926 (-)	NCBI	GRCm39		mm39
GRCm39 Ensembl	5	9,016,033 - 9,047,324 (-)	Ensembl
GRCm38	5	8,966,033 - 8,997,146 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	8,966,033 - 8,997,324 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	8,966,048 - 8,997,146 (-)	NCBI	GRCm37		mm9	NCBIm37
MGSCv36	5	8,972,054 - 9,003,152 (-)	NCBI			mm8
Celera	5	8,885,457 - 8,916,553 (-)	NCBI		Celera
Cytogenetic Map	5	A1	NCBI

Crot
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955607	378,439 - 413,394 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955607	379,121 - 413,394 (-)	NCBI	ChiLan1.0	ChiLan1.0

CROT
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
PanPan1.1	7	92,989,868 - 93,043,832 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	92,989,868 - 93,043,832 (+)	Ensembl	panpan1.1		panPan2
Mhudiblu_PPA_v0	7	79,339,498 - 79,393,676 (+)	NCBI	Mhudiblu_PPA_v0		panPan3

CROT
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	13,475,130 - 13,532,536 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	13,475,235 - 13,532,536 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	13,046,798 - 13,104,279 (+)	NCBI
ROS_Cfam_1.0	14	13,240,042 - 13,298,355 (+)	NCBI
UMICH_Zoey_3.1	14	13,443,706 - 13,500,941 (+)	NCBI
UNSW_CanFamBas_1.0	14	13,169,264 - 13,227,485 (+)	NCBI
UU_Cfam_GSD_1.0	14	13,452,909 - 13,510,196 (+)	NCBI

Crot
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	26,538,694 - 26,575,933 (+)	NCBI
SpeTri2.0	NW_004936763	1,425,394 - 1,462,638 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CROT
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	93,258,619 - 93,308,151 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	93,263,606 - 93,308,150 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	102,743,699 - 102,788,243 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CROT
(Chlorocebus sabaeus - African green monkey)

Vervet Assembly	Chr	Position (strand)	Source	Genome Browsers
Vervet Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	61,531,263 - 61,584,448 (-)	NCBI
ChlSab1.1 Ensembl	21	61,531,060 - 61,584,447 (-)	Ensembl

Crot
(Heterocephalus glaber - naked mole-rat)

Molerat Assembly	Chr	Position (strand)	Source	Genome Browsers
Molerat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624739	34,696,516 - 34,738,143 (+)	NCBI

Position Markers

RH142432

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_6.0	4	22,115,881 - 22,116,119	NCBI	Rnor6.0
Rnor_5.0	4	22,052,703 - 22,052,941	UniSTS	Rnor5.0
RGSC_v3.4	4	22,024,059 - 22,024,297	UniSTS	RGSC3.4
Celera	4	20,625,873 - 20,626,111	UniSTS
Cytogenetic Map	4	q12	UniSTS

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61408	Scl23	Serum cholesterol level QTL 23		0.0005	blood HDL phospholipid amount (VT:0010504)	serum high density lipoprotein phospholipid level (CMO:0001567)	4	1	25545519	Rat
724557	Plsm1	Polydactyly-luxate syndrome (PLS) morphotypes QTL 1		0.0003	forelimb integrity trait (VT:0010562)	front foot phalanges count (CMO:0001947)	4	1	25545519	Rat
61351	Bp33	Blood pressure QTL 33		0.0018	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	1	25545519	Rat
1641905	Colcr1	Colorectal carcinoma resistance QTL 1	4.3	0.0003	intestine integrity trait (VT:0010554)	benign colorectal tumor surface area measurement (CMO:0001799)	4	1	26654881	Rat
61333	Gluco16	Glucose level QTL 16	4.3	0.00001	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	1	26803291	Rat
9589046	Scfw2	Subcutaneous fat weight QTL 2	5.54	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	4	1	28352196	Rat
9589097	Slep11	Serum leptin concentration QTL 11	5.09	0.001	blood leptin amount (VT:0005667)	plasma leptin level (CMO:0000781)	4	1	28352196	Rat
9590100	Sffal4	Serum free fatty acids level QTL 4	7.36	0.05	blood free fatty acid amount (VT:0001553)	plasma free fatty acids level (CMO:0000546)	4	1	28352196	Rat
8552903	Pigfal2	Plasma insulin-like growth factor 1 level QTL 2	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	1	28352196	Rat
1357343	Gluco4	Glucose level QTL 4		0.00002	adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)	4	1	29778604	Rat
1357341	Gluco5	Glucose level QTL 5	6.4		adipocyte free fatty acid secretion trait (VT:0010465)	absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)	4	1	29778604	Rat
738021	Hcar13	Hepatocarcinoma resistance QTL 13	4.3		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	4	1	31554484	Rat
634323	Hc2	Hypercalciuria QTL 2	2.15		urine calcium amount (VT:0002985)	urine calcium excretion rate (CMO:0000763)	4	1	42118977	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	3043231	79575658	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	3043231	145254791	Rat
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3044017	55791834	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3044017	64915903	Rat
1358201	Gluco12	Glucose level QTL12	1.6		adipocyte glucose uptake trait (VT:0004185)	adipocyte maximal glucose uptake (CMO:0000870)	4	3044114	26753655	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3047807	55324857	Rat
631209	Bw2	Body weight QTL2	4.2		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	6467693	43414792	Rat
1300141	Bp178	Blood pressure QTL 178			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	6572939	37703537	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	7342404	92484039	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	7850904	182171018	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	8052189	53052189	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	8052189	53052189	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	8052189	53052189	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	8052189	53052189	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	8052189	53052189	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	8052189	53052189	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	12638974	57638974	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	16149941	61149941	Rat
70222	Eae2	Experimental allergic encephalomyelitis QTL 2	4.3		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	4	18222187	37685319	Rat
1354665	Stl10	Serum triglyceride level QTL 10	3.57		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	18222187	43414792	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	18222187	61039065	Rat
8552803	Bw144	Body weight QTL 144	16		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	19618866	31825560	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	109
Count of miRNA genes:	84
Interacting mature miRNAs:	103
Transcripts:	ENSRNOT00000067462
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	36	57	41	19	41	8	10	68	35	40	11	8
Low		7						1	6		1
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_031987	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592918	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592919	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108458	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108459	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108460	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC074004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211264	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ214633	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	J02844	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000141	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	U26033	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

ENSRNOT00000067462 ⟹ ENSRNOP00000063856

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	22,081,604 - 22,116,265 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000090968 ⟹ ENSRNOP00000071087

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	22,084,954 - 22,111,749 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091799 ⟹ ENSRNOP00000073847

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	4	22,082,194 - 22,116,241 (+)	Ensembl

RefSeq Acc Id:

NM_031987 ⟹ NP_114193

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,098,174 - 25,133,109 (+)	NCBI
Rnor_6.0	4	22,081,604 - 22,116,265 (+)	NCBI
Rnor_5.0	4	22,018,106 - 22,053,087 (+)	NCBI
RGSC_v3.4	4	22,023,913 - 22,067,029 (-)	RGD
Celera	4	20,575,938 - 20,626,257 (+)	RGD

Sequence:

show sequence

GAGTGCAGAGAGCCAAGCCGGGTGCAGGAGTTTTCTTACTGTGACTATACCATGGAAAATCAAT
TGGCTAAGTCAATTGAAGAACGAACATTCCAGTACCAGGACTCTCTTCCGCCCTTGCCCGTTCC
TTCGCTTGAAGAATCACTGAAGAAGTACCTTGAGTCAGTGAAGCCATTTGCAAATGAAGACGAA
TACAAGAAAACTGAAGAAATAGTTCAAAAGTTTCAAGATGGAGTTGGCAAGACATTGCATCAGA
AGTTACTTGAAAGGGCTAAAGGAAAAAGAAACTGGCTGGAAGAGTGGTGGCTCAATGTCGCCTA
CTTGGATGTGCGTATTCCATCACAACTGAACGTGAACTTTGTGGGTCCGTCTCCCCACTTTGAA
CACTACTGGCCTGCAAGGGAAGGCACTCAGTTGGAAAGAGGAAGCATACTACTGTGGCACAACT
TGAACTACTGGCAGCTGCTAAGAAGAGAAAAATTGCCTGTACATAAATCTGGAAATACTCCTCT
AGACATGAACCAATTCCGGATGCTGTTTTCTACCTGCAAGGTTCCGGGAATCACTAGAGATTCG
ATTATGAATTATTTTAAGACTGAGAGCGAGGGGCATTGTCCGACCCACATTGCCGTGCTGTGTC
GAGGCAGAGCGTTTGTCTTCGATGTCCTCCATGACGGTTGTTTGATCACCCCACCAGAACTTCT
CAGACAACTGACATACATCTACCAGAAATGCTGGAATGAACCTGTTGGGCCCAGTATAGCGGCA
TTAACCAGTGAGGAGCGAACTCGGTGGGCGAAGGCAAGAGAATATCTGATTGGTCTTGATCCAG
AGAACTTGACTTTATTAGAAAAAATTCAATCCAGTTTATTTGTGTATTCCATAGAAGACACCAG
TCCACATGCAACCCCAGAAAATTTTTCTCAGGTCTTTGAAATGCTTCTTGGTGGAGATCCAGCA
GTGCGCTGGGGTGACAAGTCCTATAATCTGATTTCCTTTGCTAACGGAATATTTGGCTGTAGCT
GTGATCATGCTCCTTATGATGCAATGCTTATGGTGAACATTGCTCACTATGTTGATGAGAAGCT
CCTAGAGACGGAAGGGAGATGGAAGGGTTCAGAAAAAGTCCGGGATATACCGTTGCCAGAGGAG
CTGGCTTTCACTGTGGATGAGAAGATACTGAATGACGTCTACCAAGCCAAAGCCCAACACCTCA
AAGCAGCATCTGATTTACAGATAGCAGCATCTACCTTCACATCTTTTGGCAAAAAGCTCACTAA
GAAGGAGGCCCTTCACCCTGACACCTTTATTCAGCTCGCTCTTCAGCTCGCCTACTACAGACTT
CATGGACGCCCCGGTTGCTGCTATGAAACAGCTATGACAAGATACTTTTACCATGGCCGAACAG
AGACTGTGCGATCTTGTACAGTGGAGGCCGTCAGGTGGTGCCAGTCCATGCAGGATCCTTCTGC
CAGTCTCCTTGAACGTCAGCAAAAGATGTTAGACGCTTTTGCAAAGCATAACAAGATGATGAGA
GATTGTTCCCATGGAAAAGGATTTGACCGTCACCTTTTAGGCCTTTTGCTCATAGCAAAAGAGG
AAGGCCTCCCTGTTCCAGAACTGTTTGAGGATCCACTTTTCTCCAGAAGTGGAGGAGGTGGGAA
TTTTGTGCTGTCAACAAGTCTGGTTGGTTACTTACGAATTCAGGGAGTCGTGGTTCCCATGGTA
CATAATGGATACGGCTTTTTCTACCACATCAGAGATGACAGGTTTGTGGTGACATGTTCATCCT
GGAGGTCATGTCTTGAGACTGATGCAGAAAAGTTAGTGGAGATGATTTTTCATGCTTTCCACGA
TATGATACATCTGATGAACACGGCTCATCTTTAGAGACTCAGAGACATACAGGTCACAGAAACT
GGGTACGGAGAATGGGATGGTGATACGACATGGAAGGAATGTTGACTTAAAGGAAACCTGTTAA
TGCAGGGATTAGAGAGGGATGCACTCTAGATTTATTCTACCTTAAAGCCTTCTGTTGCAACAGC
AATGCAAACTCAGACATAGTGAATAGAACTATGCAATGTTTTAAGCCTCAACAATGCACATCTG
TATATTTTAACAATACAAATCCTACTCTAATGTTAAAATATTTTTGTTGGCACATGTGTAGGTT
GCAAGTCCTCTGTGAACATAATTATAGAGTATTTCTCAAGCACTTTAATACTTTCTAATGGCCA
GAGGGTATAAAACCCATGGTTAGATGCTAATTTCCCTGACATCAGTGCCTTCTACATCCAGCAC
AGGAGTACAAGCCTATGAGATTTCATGGGAAAACCACTATTGTTCAATATTGATCTAAAATAGC
TCCTTTGAACAGACAAAAGTATCAAGTTGTATTAGAAAAGAATATTAGCAAAACTCATTATGAT
ATGTTGTAATTAATTTTGTGAATATAAAATCAAAACACTTCCATTTAAATCTACTTGGTAGAGT
TAGTGGCTTTAAAGGGTTAAATGTCGAGTATGATTCTCAGAACTTTATAATTATTTCCCACTGT
TATTCAAAATGTTAGCATATAGACATTCTCCCATTGTAATTCAGTGTTTATATTCTCAAAGAAT
AAAGCATCCAGAATCCTTGTAATTTCTCATTTATTTTCAATAAAAATGATTCCTGAT

hide sequence

RefSeq Acc Id:

XM_006236004 ⟹ XP_006236066

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,098,279 - 25,133,111 (+)	NCBI
Rnor_6.0	4	22,081,673 - 22,116,264 (+)	NCBI
Rnor_5.0	4	22,018,106 - 22,053,087 (+)	NCBI

Sequence:

show sequence

CCCACACGGCGAGGGGTTAAGGGGTATTGCAGTAGCGCGAAGCTGAGCTGAATGCAGTCCGGCT
GTGCGCCGAGGCGTCCGGGTCAGGCGCGGGCGTGGTGTCCCCAGAGCATCTCGCCCTTCTGGTT
TGGGGTGCTCACCCCTTCAGTTGCGCCCGCCTTGCTAGAGTGTCGGAGTGCTGATCGACTGTTT
TCTTACTGTGACTATACCATGGAAAATCAATTGGCTAAGTCAATTGAAGAACGAACATTCCAGT
ACCAGGACTCTCTTCCGCCCTTGCCCGTTCCTTCGCTTGAAGAATCACTGAAGAAGTACCTTGA
GTCAGTGAAGCCATTTGCAAATGAAGACGAATACAAGAAAACTGAAGAAATAGTTCAAAAGTTT
CAAGATGGAGTTGGCAAGACATTGCATCAGAAGTTACTTGAAAGGGCTAAAGGAAAAAGAAACT
GGCTGGAAGAGTGGTGGCTCAATGTCGCCTACTTGGATGTGCGTATTCCATCACAACTGAACGT
GAACTTTGTGGGTCCGTCTCCCCACTTTGAACACTACTGGCCTGCAAGGGAAGGCACTCAGTTG
GAAAGAGGAAGCATACTACTGTGGCACAACTTGAACTACTGGCAGCTGCTAAGAAGAGAAAAAT
TGCCTGTACATAAATCTGGAAATACTCCTCTAGACATGAACCAATTCCGGATGCTGTTTTCTAC
CTGCAAGGTTCCGGGAATCACTAGAGATTCGATTATGAATTATTTTAAGACTGAGAGCGAGGGG
CATTGTCCGACCCACATTGCCGTGCTGTGTCGAGGCAGAGCGTTTGTCTTCGATGTCCTCCATG
ACGGTTGTTTGATCACCCCACCAGAACTTCTCAGACAACTGACATACATCTACCAGAAATGCTG
GAATGAACCTGTTGGGCCCAGTATAGCGGCATTAACCAGTGAGGAGCGAACTCGGTGGGCGAAG
GCAAGAGAATATCTGATTGGTCTTGATCCAGAGAACTTGACTTTATTAGAAAAAATTCAATCCA
GTTTATTTGTGTATTCCATAGAAGACACCAGTCCACATGCAACCCCAGAAAATTTTTCTCAGGT
CTTTGAAATGCTTCTTGGTGGAGATCCAGCAGTGCGCTGGGGTGACAAGTCCTATAATCTGATT
TCCTTTGCTAACGGAATATTTGGCTGTAGCTGTGATCATGCTCCTTATGATGCAATGGTTATGG
TGAACATTGCTCACTATGTTGATGAGAAGCTCCTAGAGACGGAAGGGAGATGGAAGGGTTCAGA
AAAAGTCCGGGATATACCGTTGCCAGAGGAGCTGGCTTTCACTGTGGATGAGAAGATACTGAAT
GACGTCTACCAAGCCAAAGCCCAACACCTCAAAGCAGCATCTGATTTACAGATAGCAGCATCTA
CCTTCACATCTTTTGGCAAAAAGCTCACTAAGAAGGAGGCCCTTCACCCTGACACCTTTATTCA
GCTCGCTCTTCAGCTCGCCTACTACAGACTTCATGGACGCCCCGGTTGCTGCTATGAAACAGCT
ATGACAAGATACTTTTACCATGGCCGAACAGAGACTGTGCGATCTTGTACAGTGGAGGCCGTCA
GGTGGTGCCAGTCCATGCAGGATCCTTCTGCCAGTCTCCTTGAACGTCAGCAAAAGATGTTAGA
CGCTTTTGCAAAGCATAACAAGATGATGAGAGATTGTTCCCATGGAAAAGGATTTGACCGTCAC
CTTTTAGGCCTTTTGCTCATAGCAAAAGAGGAAGGCCTCCCTGTTCCAGAACTGTTTGAGGATC
CACTTTTCTCCAGAAGTGGAGGAGGTGGGAATTTTGTGCTGTCAACAAGTCTGGTTGGTTACTT
ACGAATTCAGGGAGTCGTGGTTCCCATGGTACATAATGGATACGGCTTTTTCTACCACATCAGA
GATGACAGGTTTGTGGTGACATGTTCATCCTGGAGGTCATGTCTTGAGACTGATGCAGAAAAGT
TAGTGGAGATGATTTTTCATGCTTTCCACGATATGATACATCTGATGAACACGGCTCATCTTTA
GAGACTCAGAGACATACAGGTCACAGAAACTGGGTACGGAGAATGGGATGGTGATACGACATGG
AAGGAATGTTGACTTAAAGGAAACCTGTTAATGCAGGGATTAGAGAGGGATGCACTCTAGATTT
ATTCTACCTTAAAGCCTTCTGTGTTGCAACAGCAATGCAAACTCAGACATAGTGAATAGAACTA
TGCAATGTTTTAAGCCTCAACAATGCACATCTGTATATTTTAACAATACAAATCCTACTCTAAT
GTTAAAATATTTTTGTTGGCACATGTGTAGGTTGCAAGTCCTCTGTGAACATAATTATAGAGTA
TTTCTCAAGCACTTTAATACTTTCTAATGGCCAGAGGGTATAAAACCCATGGTTAGATGCTAAT
TTCCCTGACATCAGTGCCTTCTACATCCAGCACAGGAGTACAAGCCTATGAGATTTCATGGGAA
AACCACTATTGTTCAATATTGATCTAAAATAGCTCCTTTGAACAGACAAAAGTATCAAGTTGTA
TTAGAAAAGAATATTAGCAAAACTCATTATGATATGTTGTAATTAATTTTGTGAATATAAAATC
AAAACACTTCCATTTAAATCTACTTGGTAGAGTTAGTGGCTTTTAAAGGGTTAAATGTCGAGTA
TGATTCTCAGAACTTTATAATTATTTCCCACTGTTATTCAAAATGTTAGCATATAGACATTCTC
CCATTGTAATTCAGTGTTTATATTCTCAAAGAATAAAGCATCCAGAATCCTTGTAATTTCTCAT
TTATTTTCAATAAAAATGATTCCTGA

hide sequence

RefSeq Acc Id:

XM_006236005 ⟹ XP_006236067

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,097,399 - 25,133,111 (+)	NCBI
Rnor_6.0	4	22,079,837 - 22,116,264 (+)	NCBI
Rnor_5.0	4	22,018,106 - 22,053,087 (+)	NCBI

Sequence:

show sequence

AGTACTAGAAATCAATGGTTTTTATAGAAACTTTAAAAAGTTATAATCTCCACTAAGCTAATTT
TAAGACTCAGGACAACTTGCTGGTATAATACATACTCCAAAAGCTTGGAATCTTTAGCCATCAA
GACCTGTCTATCCTGCGCTAAGAAATACAAGCTTGTTCAAATTTAATCTGAGTTCTACATGATT
TGAAATTTGACATTAAAGTATCTAAAGTATCTACATCCAGTAGAAAACATTTCAAGGACTCTCC
TTATCTGTATTTTTACATAGATGGTCACTTTTTTTTTTTCCACATACGCCAAGTCCCATTGATT
TTCTTCAGTCCCACAGTTTTCTCTTTCTGAGAAGTCACTGTCTTTATAGAAACACTATTTCTGC
TTAATGAAAGCAGGAAGAAGGGAAACATGCAGCAGGTCTGGGATGTTGCTAAGTGGTAGAGACC
CTGTATAAAGTCCTGGGTTGATCCCACTACTAAAAACACAAAAATAATGAAGGTGAGTGATCCT
AAATTATTTGCCACCAGCAAACATTCAATATGAACAAACTTCTAAAGAGGTGCCAACATTTTTT
ACTTAAGAAAAAAAAGACAACAAAGGTTGAATTCCATCTTGTAAGCCTAATATAACGTTATCCA
GAATGTAGCACTTACATACTATGGAGGGGAAAAAAAGTTCTTTAGCAGTCACTTTGACAAGCTT
AGAGAGATCAGATTGATTATGAAACACCTCCAGTAAGCTGTACAGTCATAAAACATAGTAATTC
TGCAAGAAACAAGACTATTTACACCGAGTCCTTCAATGACACATAGCCTCAACTCGGTTCAGGG
CAGATTACTACCAAAAGGATTTCGGAAAGGCAGCAGCTTTTAATATACTAATTTGAAATGAAGT
CTTTAAACTGTGTCGAATGAGTGAGCATGTAAAATAGTTTTCCTTCCACGAAAATCAAACAGAA
GAACAAATAAACTGTCTATAAGCTTAAAATTGTAACAATTTATTTCAAAAGGTAAATTAAAAAA
TGCATTGACCTGTGAAAATAAATTGACCTCATAGTCTTCCTCTAGAACTTGCTAGCTTTCTGGA
TTAAAAATGCTACTTCTTAGACTGATAAAAAAAAAATTCTGGCCAGCTCAAAGTTTGAAGCTTG
AACATCGCTAGAGACTCCAAGGGCTTGCAGCTGGCCAAATCTTAGTCTCAAAGAGGCGACGAGG
CCAAACCGGATCCATTCTGCTGCTATTCTCTTGCCAGCACACAGGGTAGACAAAATAAAATGTC
TCAGTACAACTCCAGTAAAAATTCTTGCTTGGGCCATGCAAAGGAGGCTCGCACTCGCAAGGGG
GAGCGACTGGGAAGAAAGAACACAGCGCCAAGCGCCTAAGACTTCGGTAAAAAGCAGGCTGAGC
CGCGGGCCCTCCTTACCCAGCCACAGGGCTGTGCCGGAGCGTGGGCAGAGCCGCCTACATCTCT
GGACCTAGGCCAATCTCCCGCAGCATCCGGAAGGAAGCTGCTGTAGCCGGGACTGCAAAGAGCT
AATCGGATTTTCTGCTCGCGTTCCTGGGGTCCGCAGCCTGGGGCGCAACCAGAGCCAGGGAGAC
CGGCGGGGGCGGGACCTGCAAGACTCGACAGCCCACCCCTTCCAGCGCGGGGTGGGACCCTCGC
GGCTTTCCGTCCAATCCCGTTTCCCGACGCGCGCAGGGCGGGACCCTCACGGCTTTCCGTTCTA
GTTCGGCTTCAGGGCCCCAGGCTAACCCGGGTAGTGGCTGAGTGCAGAGAGCCAAGCCGGGTGC
AGGAGGTTCAATCAGAATTGTTCAAGCAGGCTCCTGGAAGTCCTGAGCGCTTCATCTTGGTTTA
CTGTTTTCTTACTGTGACTATACCATGGAAAATCAATTGGCTAAGTCAATTGAAGAACGAACAT
TCCAGTACCAGGACTCTCTTCCGCCCTTGCCCGTTCCTTCGCTTGAAGAATCACTGAAGAAGTA
CCTTGAGTCAGTGAAGCCATTTGCAAATGAAGACGAATACAAGAAAACTGAAGAAATAGTTCAA
AAGTTTCAAGATGGAGTTGGCAAGACATTGCATCAGAAGTTACTTGAAAGGGCTAAAGGAAAAA
GAAACTGGCTGGAAGAGTGGTGGCTCAATGTCGCCTACTTGGATGTGCGTATTCCATCACAACT
GAACGTGAACTTTGTGGGTCCGTCTCCCCACTTTGAACACTACTGGCCTGCAAGGGAAGGCACT
CAGTTGGAAAGAGGAAGCATACTACTGTGGCACAACTTGAACTACTGGCAGCTGCTAAGAAGAG
AAAAATTGCCTGTACATAAATCTGGAAATACTCCTCTAGACATGAACCAATTCCGGATGCTGTT
TTCTACCTGCAAGGTTCCGGGAATCACTAGAGATTCGATTATGAATTATTTTAAGACTGAGAGC
GAGGGGCATTGTCCGACCCACATTGCCGTGCTGTGTCGAGGCAGAGCGTTTGTCTTCGATGTCC
TCCATGACGGTTGTTTGATCACCCCACCAGAACTTCTCAGACAACTGACATACATCTACCAGAA
ATGCTGGAATGAACCTGTTGGGCCCAGTATAGCGGCATTAACCAGTGAGGAGCGAACTCGGTGG
GCGAAGGCAAGAGAATATCTGATTGGTCTTGATCCAGAGAACTTGACTTTATTAGAAAAAATTC
AATCCAGTTTATTTGTGTATTCCATAGAAGACACCAGTCCACATGCAACCCCAGAAAATTTTTC
TCAGGTCTTTGAAATGCTTCTTGGTGGAGATCCAGCAGTGCGCTGGGGTGACAAGTCCTATAAT
CTGATTTCCTTTGCTAACGGAATATTTGGCTGTAGCTGTGATCATGCTCCTTATGATGCAATGG
TTATGGTGAACATTGCTCACTATGTTGATGAGAAGCTCCTAGAGACGGAAGGGAGATGGAAGGG
TTCAGAAAAAGTCCGGGATATACCGTTGCCAGAGGAGCTGGCTTTCACTGTGGATGAGAAGATA
CTGAATGACGTCTACCAAGCCAAAGCCCAACACCTCAAAGCAGCATCTGATTTACAGATAGCAG
CATCTACCTTCACATCTTTTGGCAAAAAGCTCACTAAGAAGGAGGCCCTTCACCCTGACACCTT
TATTCAGCTCGCTCTTCAGCTCGCCTACTACAGACTTCATGGACGCCCCGGTTGCTGCTATGAA
ACAGCTATGACAAGATACTTTTACCATGGCCGAACAGAGACTGTGCGATCTTGTACAGTGGAGG
CCGTCAGGTGGTGCCAGTCCATGCAGGATCCTTCTGCCAGTCTCCTTGAACGTCAGCAAAAGAT
GTTAGACGCTTTTGCAAAGCATAACAAGATGATGAGAGATTGTTCCCATGGAAAAGGATTTGAC
CGTCACCTTTTAGGCCTTTTGCTCATAGCAAAAGAGGAAGGCCTCCCTGTTCCAGAACTGTTTG
AGGATCCACTTTTCTCCAGAAGTGGAGGAGGTGGGAATTTTGTGCTGTCAACAAGTCTGGTTGG
TTACTTACGAATTCAGGGAGTCGTGGTTCCCATGGTACATAATGGATACGGCTTTTTCTACCAC
ATCAGAGATGACAGGTTTGTGGTGACATGTTCATCCTGGAGGTCATGTCTTGAGACTGATGCAG
AAAAGTTAGTGGAGATGATTTTTCATGCTTTCCACGATATGATACATCTGATGAACACGGCTCA
TCTTTAGAGACTCAGAGACATACAGGTCACAGAAACTGGGTACGGAGAATGGGATGGTGATACG
ACATGGAAGGAATGTTGACTTAAAGGAAACCTGTTAATGCAGGGATTAGAGAGGGATGCACTCT
AGATTTATTCTACCTTAAAGCCTTCTGTGTTGCAACAGCAATGCAAACTCAGACATAGTGAATA
GAACTATGCAATGTTTTAAGCCTCAACAATGCACATCTGTATATTTTAACAATACAAATCCTAC
TCTAATGTTAAAATATTTTTGTTGGCACATGTGTAGGTTGCAAGTCCTCTGTGAACATAATTAT
AGAGTATTTCTCAAGCACTTTAATACTTTCTAATGGCCAGAGGGTATAAAACCCATGGTTAGAT
GCTAATTTCCCTGACATCAGTGCCTTCTACATCCAGCACAGGAGTACAAGCCTATGAGATTTCA
TGGGAAAACCACTATTGTTCAATATTGATCTAAAATAGCTCCTTTGAACAGACAAAAGTATCAA
GTTGTATTAGAAAAGAATATTAGCAAAACTCATTATGATATGTTGTAATTAATTTTGTGAATAT
AAAATCAAAACACTTCCATTTAAATCTACTTGGTAGAGTTAGTGGCTTTTAAAGGGTTAAATGT
CGAGTATGATTCTCAGAACTTTATAATTATTTCCCACTGTTATTCAAAATGTTAGCATATAGAC
ATTCTCCCATTGTAATTCAGTGTTTATATTCTCAAAGAATAAAGCATCCAGAATCCTTGTAATT
TCTCATTTATTTTCAATAAAAATGATTCCTGA

hide sequence

RefSeq Acc Id:

XM_017592918 ⟹ XP_017448407

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	22,079,837 - 22,116,264 (+)	NCBI

Sequence:

show sequence

AGTACTAGAAATCAATGGTTTTTATAGAAACTTTAAAAAGTTATAATCTCCACTAAGCTAATTT
TAAGACTCAGGACAACTTGCTGGTATAATACATACTCCAAAAGCTTGGAATCTTTAGCCATCAA
GACCTGTCTATCCTGCGCTAAGAAATACAAGCTTGTTCAAATTTAATCTGAGTTCTACATGATT
TGAAATTTGACATTAAAGTATCTAAAGTATCTACATCCAGTAGAAAACATTTCAAGGACTCTCC
TTATCTGTATTTTTACATAGATGGTCACTTTTTTTTTTTCCACATACGCCAAGTCCCATTGATT
TTCTTCAGTCCCACAGTTTTCTCTTTCTGAGAAGTCACTGTCTTTATAGAAACACTATTTCTGC
TTAATGAAAGCAGGAAGAAGGGAAACATGCAGCAGGTCTGGGATGTTGCTAAGTGGTAGAGACC
CTGTATAAAGTCCTGGGTTGATCCCACTACTAAAAACACAAAAATAATGAAGGTGAGTGATCCT
AAATTATTTGCCACCAGCAAACATTCAATATGAACAAACTTCTAAAGAGGTGCCAACATTTTTT
ACTTAAGAAAAAAAAGACAACAAAGGTTGAATTCCATCTTGTAAGCCTAATATAACGTTATCCA
GAATGTAGCACTTACATACTATGGAGGGGAAAAAAAGTTCTTTAGCAGTCACTTTGACAAGCTT
AGAGAGATCAGATTGATTATGAAACACCTCCAGTAAGCTGTACAGTCATAAAACATAGTAATTC
TGCAAGAAACAAGACTATTTACACCGAGTCCTTCAATGACACATAGCCTCAACTCGGTTCAGGG
CAGATTACTACCAAAAGGATTTCGGAAAGGCAGCAGCTTTTAATATACTAATTTGAAATGAAGT
CTTTAAACTGTGTCGAATGAGTGAGCATGTAAAATAGTTTTCCTTCCACGAAAATCAAACAGAA
GAACAAATAAACTGTCTATAAGCTTAAAATTGTAACAATTTATTTCAAAAGGTAAATTAAAAAA
TGCATTGACCTGTGAAAATAAATTGACCTCATAGTCTTCCTCTAGAACTTGCTAGCTTTCTGGA
TTAAAAATGCTACTTCTTAGACTGATAAAAAAAAAATTCTGGCCAGCTCAAAGTTTGAAGCTTG
AACATCGCTAGAGACTCCAAGGGCTTGCAGCTGGCCAAATCTTAGTCTCAAAGAGGCGACGAGG
CCAAACCGGATCCATTCTGCTGCTATTCTCTTGCCAGCACACAGGGTAGACAAAATAAAATGTC
TCAGTACAACTCCAGTAAAAATTCTTGCTTGGGCCATGCAAAGGAGGCTCGCACTCGCAAGGGG
GAGCGACTGGGAAGAAAGAACACAGCGCCAAGCGCCTAAGACTTCGGTAAAAAGCAGGCTGAGC
CGCGGGCCCTCCTTACCCAGCCACAGGGCTGTGCCGGAGCGTGGGCAGAGCCGCCTACATCTCT
GGACCTAGGCCAATCTCCCGCAGCATCCGGAAGGAAGCTGCTGTAGCCGGGACTGCAAAGAGCT
AATCGGATTTTCTGCTCGCGTTCCTGGGGTCCGCAGCCTGGGGCGCAACCAGAGCCAGGGAGAC
CGGCGGGGGCGGGACCTGCAAGACTCGACAGCCCACCCCTTCCAGCGCGGGGTGGGACCCTCGC
GGCTTTCCGTCCAATCCCGTTTCCCGACGCGCGCAGGGCGGGACCCTCACGGCTTTCCGTTCTA
GTTCGGCTTCAGGGCCCCAGGCTAACCCGGGTAGTGGCTGAGTGCAGAGAGCCAAGCCGGGTGC
AGGAGTTGAATGTATTTCTTCCTTCCCACCGGGTTTGGCCAGTTCAGGTTCAATCAGAATTGTT
CAAGCAGGCTCCTGGAAGTCCTGAGCGCTTCATCTTGGTTTACTGTTTTCTTACTGTGACTATA
CCATGGAAAATCAATTGGCTAAGTCAATTGAAGAACGAACATTCCAGTACCAGGACTCTCTTCC
GCCCTTGCCCGTTCCTTCGCTTGAAGAATCACTGAAGAAGTACCTTGAGTCAGTGAAGCCATTT
GCAAATGAAGACGAATACAAGAAAACTGAAGAAATAGTTCAAAAGTTTCAAGATGGAGTTGGCA
AGACATTGCATCAGAAGTTACTTGAAAGGGCTAAAGGAAAAAGAAACTGGCTGGAAGAGTGGTG
GCTCAATGTCGCCTACTTGGATGTGCGTATTCCATCACAACTGAACGTGAACTTTGTGGGTCCG
TCTCCCCACTTTGAACACTACTGGCCTGCAAGGGAAGGCACTCAGTTGGAAAGAGGAAGCATAC
TACTGTGGCACAACTTGAACTACTGGCAGCTGCTAAGAAGAGAAAAATTGCCTGTACATAAATC
TGGAAATACTCCTCTAGACATGAACCAATTCCGGATGCTGTTTTCTACCTGCAAGGTTCCGGGA
ATCACTAGAGATTCGATTATGAATTATTTTAAGACTGAGAGCGAGGGGCATTGTCCGACCCACA
TTGCCGTGCTGTGTCGAGGCAGAGCGTTTGTCTTCGATGTCCTCCATGACGGTTGTTTGATCAC
CCCACCAGAACTTCTCAGACAACTGACATACATCTACCAGAAATGCTGGAATGAACCTGTTGGG
CCCAGTATAGCGGCATTAACCAGTGAGGAGCGAACTCGGTGGGCGAAGGCAAGAGAATATCTGA
TTGGTCTTGATCCAGAGAACTTGACTTTATTAGAAAAAATTCAATCCAGTTTATTTGTGTATTC
CATAGAAGACACCAGTCCACATGCAACCCCAGAAAATTTTTCTCAGGTCTTTGAAATGCTTCTT
GGTGGAGATCCAGCAGTGCGCTGGGGTGACAAGTCCTATAATCTGATTTCCTTTGCTAACGGAA
TATTTGGCTGTAGCTGTGATCATGCTCCTTATGATGCAATGGTTATGGTGAACATTGCTCACTA
TGTTGATGAGAAGCTCCTAGAGACGGAAGGGAGATGGAAGGGTTCAGAAAAAGTCCGGGATATA
CCGTTGCCAGAGGAGCTGGCTTTCACTGTGGATGAGAAGATACTGAATGACGTCTACCAAGCCA
AAGCCCAACACCTCAAAGCAGCATCTGATTTACAGATAGCAGCATCTACCTTCACATCTTTTGG
CAAAAAGCTCACTAAGAAGGAGGCCCTTCACCCTGACACCTTTATTCAGCTCGCTCTTCAGCTC
GCCTACTACAGACTTCATGGACGCCCCGGTTGCTGCTATGAAACAGCTATGACAAGATACTTTT
ACCATGGCCGAACAGAGACTGTGCGATCTTGTACAGTGGAGGCCGTCAGGTGGTGCCAGTCCAT
GCAGGATCCTTCTGCCAGTCTCCTTGAACGTCAGCAAAAGATGTTAGACGCTTTTGCAAAGCAT
AACAAGATGATGAGAGATTGTTCCCATGGAAAAGGATTTGACCGTCACCTTTTAGGCCTTTTGC
TCATAGCAAAAGAGGAAGGCCTCCCTGTTCCAGAACTGTTTGAGGATCCACTTTTCTCCAGAAG
TGGAGGAGGTGGGAATTTTGTGCTGTCAACAAGTCTGGTTGGTTACTTACGAATTCAGGGAGTC
GTGGTTCCCATGGTACATAATGGATACGGCTTTTTCTACCACATCAGAGATGACAGGTTTGTGG
TGACATGTTCATCCTGGAGGTCATGTCTTGAGACTGATGCAGAAAAGTTAGTGGAGATGATTTT
TCATGCTTTCCACGATATGATACATCTGATGAACACGGCTCATCTTTAGAGACTCAGAGACATA
CAGGTCACAGAAACTGGGTACGGAGAATGGGATGGTGATACGACATGGAAGGAATGTTGACTTA
AAGGAAACCTGTTAATGCAGGGATTAGAGAGGGATGCACTCTAGATTTATTCTACCTTAAAGCC
TTCTGTGTTGCAACAGCAATGCAAACTCAGACATAGTGAATAGAACTATGCAATGTTTTAAGCC
TCAACAATGCACATCTGTATATTTTAACAATACAAATCCTACTCTAATGTTAAAATATTTTTGT
TGGCACATGTGTAGGTTGCAAGTCCTCTGTGAACATAATTATAGAGTATTTCTCAAGCACTTTA
ATACTTTCTAATGGCCAGAGGGTATAAAACCCATGGTTAGATGCTAATTTCCCTGACATCAGTG
CCTTCTACATCCAGCACAGGAGTACAAGCCTATGAGATTTCATGGGAAAACCACTATTGTTCAA
TATTGATCTAAAATAGCTCCTTTGAACAGACAAAAGTATCAAGTTGTATTAGAAAAGAATATTA
GCAAAACTCATTATGATATGTTGTAATTAATTTTGTGAATATAAAATCAAAACACTTCCATTTA
AATCTACTTGGTAGAGTTAGTGGCTTTTAAAGGGTTAAATGTCGAGTATGATTCTCAGAACTTT
ATAATTATTTCCCACTGTTATTCAAAATGTTAGCATATAGACATTCTCCCATTGTAATTCAGTG
TTTATATTCTCAAAGAATAAAGCATCCAGAATCCTTGTAATTTCTCATTTATTTTCAATAAAAA
TGATTCCTGA

hide sequence

RefSeq Acc Id:

XM_017592919 ⟹ XP_017448408

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	22,079,837 - 22,116,264 (+)	NCBI

Sequence:

show sequence

AGTACTAGAAATCAATGGTTTTTATAGAAACTTTAAAAAGTTATAATCTCCACTAAGCTAATTT
TAAGACTCAGGACAACTTGCTGGTATAATACATACTCCAAAAGCTTGGAATCTTTAGCCATCAA
GACCTGTCTATCCTGCGCTAAGAAATACAAGCTTGTTCAAATTTAATCTGAGTTCTACATGATT
TGAAATTTGACATTAAAGTATCTAAAGTATCTACATCCAGTAGAAAACATTTCAAGGACTCTCC
TTATCTGTATTTTTACATAGATGGTCACTTTTTTTTTTTCCACATACGCCAAGTCCCATTGATT
TTCTTCAGTCCCACAGTTTTCTCTTTCTGAGAAGTCACTGTCTTTATAGAAACACTATTTCTGC
TTAATGAAAGCAGGAAGAAGGGAAACATGCAGCAGGTCTGGGATGTTGCTAAGTGGTAGAGACC
CTGTATAAAGTCCTGGGTTGATCCCACTACTAAAAACACAAAAATAATGAAGGTGAGTGATCCT
AAATTATTTGCCACCAGCAAACATTCAATATGAACAAACTTCTAAAGAGGTGCCAACATTTTTT
ACTTAAGAAAAAAAAGACAACAAAGGTTGAATTCCATCTTGTAAGCCTAATATAACGTTATCCA
GAATGTAGCACTTACATACTATGGAGGGGAAAAAAAGTTCTTTAGCAGTCACTTTGACAAGCTT
AGAGAGATCAGATTGATTATGAAACACCTCCAGTAAGCTGTACAGTCATAAAACATAGTAATTC
TGCAAGAAACAAGACTATTTACACCGAGTCCTTCAATGACACATAGCCTCAACTCGGTTCAGGG
CAGATTACTACCAAAAGGATTTCGGAAAGGCAGCAGCTTTTAATATACTAATTTGAAATGAAGT
CTTTAAACTGTGTCGAATGAGTGAGCATGTAAAATAGTTTTCCTTCCACGAAAATCAAACAGAA
GAACAAATAAACTGTCTATAAGCTTAAAATTGTAACAATTTATTTCAAAAGGTAAATTAAAAAA
TGCATTGACCTGTGAAAATAAATTGACCTCATAGTCTTCCTCTAGAACTTGCTAGCTTTCTGGA
TTAAAAATGCTACTTCTTAGACTGATAAAAAAAAAATTCTGGCCAGCTCAAAGTTTGAAGCTTG
AACATCGCTAGAGACTCCAAGGGCTTGCAGCTGGCCAAATCTTAGTCTCAAAGAGGCGACGAGG
CCAAACCGGATCCATTCTGCTGCTATTCTCTTGCCAGCACACAGGGTAGACAAAATAAAATGTC
TCAGTACAACTCCAGTAAAAATTCTTGCTTGGGCCATGCAAAGGAGGCTCGCACTCGCAAGGGG
GAGCGACTGGGAAGAAAGAACACAGCGCCAAGCGCCTAAGACTTCGGTAAAAAGCAGGCTGAGC
CGCGGGCCCTCCTTACCCAGCCACAGGGCTGTGCCGGAGCGTGGGCAGAGCCGCCTACATCTCT
GGACCTAGGCCAATCTCCCGCAGCATCCGGAAGGAAGCTGCTGTAGCCGGGACTGCAAAGAGCT
AATCGGATTTTCTGCTCGCGTTCCTGGGGTCCGCAGCCTGGGGCGCAACCAGAGCCAGGGAGAC
CGGCGGGGGCGGGACCTGCAAGACTCGACAGCCCACCCCTTCCAGCGCGGGGTGGGACCCTCGC
GGCTTTCCGTCCAATCCCGTTTCCCGACGCGCGCAGGGCGGGACCCTCACGGCTTTCCGTTCTA
GTTCGGCTTCAGGGCCCCAGGCTAACCCGGGTAGTGGCTGAGTGCAGAGAGCCAAGCCGGGTGC
AGGAGTTCAGGTTCAATCAGAATTGTTCAAGCAGGCTCCTGGAAGTCCTGAGCGCTTCATCTTG
GTTTACTGTTTTCTTACTGTGACTATACCATGGAAAATCAATTGGCTAAGTCAATTGAAGAACG
AACATTCCAGTACCAGGACTCTCTTCCGCCCTTGCCCGTTCCTTCGCTTGAAGAATCACTGAAG
AAGTACCTTGAGTCAGTGAAGCCATTTGCAAATGAAGACGAATACAAGAAAACTGAAGAAATAG
TTCAAAAGTTTCAAGATGGAGTTGGCAAGACATTGCATCAGAAGTTACTTGAAAGGGCTAAAGG
AAAAAGAAACTGGCTGGAAGAGTGGTGGCTCAATGTCGCCTACTTGGATGTGCGTATTCCATCA
CAACTGAACGTGAACTTTGTGGGTCCGTCTCCCCACTTTGAACACTACTGGCCTGCAAGGGAAG
GCACTCAGTTGGAAAGAGGAAGCATACTACTGTGGCACAACTTGAACTACTGGCAGCTGCTAAG
AAGAGAAAAATTGCCTGTACATAAATCTGGAAATACTCCTCTAGACATGAACCAATTCCGGATG
CTGTTTTCTACCTGCAAGGTTCCGGGAATCACTAGAGATTCGATTATGAATTATTTTAAGACTG
AGAGCGAGGGGCATTGTCCGACCCACATTGCCGTGCTGTGTCGAGGCAGAGCGTTTGTCTTCGA
TGTCCTCCATGACGGTTGTTTGATCACCCCACCAGAACTTCTCAGACAACTGACATACATCTAC
CAGAAATGCTGGAATGAACCTGTTGGGCCCAGTATAGCGGCATTAACCAGTGAGGAGCGAACTC
GGTGGGCGAAGGCAAGAGAATATCTGATTGGTCTTGATCCAGAGAACTTGACTTTATTAGAAAA
AATTCAATCCAGTTTATTTGTGTATTCCATAGAAGACACCAGTCCACATGCAACCCCAGAAAAT
TTTTCTCAGGTCTTTGAAATGCTTCTTGGTGGAGATCCAGCAGTGCGCTGGGGTGACAAGTCCT
ATAATCTGATTTCCTTTGCTAACGGAATATTTGGCTGTAGCTGTGATCATGCTCCTTATGATGC
AATGGTTATGGTGAACATTGCTCACTATGTTGATGAGAAGCTCCTAGAGACGGAAGGGAGATGG
AAGGGTTCAGAAAAAGTCCGGGATATACCGTTGCCAGAGGAGCTGGCTTTCACTGTGGATGAGA
AGATACTGAATGACGTCTACCAAGCCAAAGCCCAACACCTCAAAGCAGCATCTGATTTACAGAT
AGCAGCATCTACCTTCACATCTTTTGGCAAAAAGCTCACTAAGAAGGAGGCCCTTCACCCTGAC
ACCTTTATTCAGCTCGCTCTTCAGCTCGCCTACTACAGACTTCATGGACGCCCCGGTTGCTGCT
ATGAAACAGCTATGACAAGATACTTTTACCATGGCCGAACAGAGACTGTGCGATCTTGTACAGT
GGAGGCCGTCAGGTGGTGCCAGTCCATGCAGGATCCTTCTGCCAGTCTCCTTGAACGTCAGCAA
AAGATGTTAGACGCTTTTGCAAAGCATAACAAGATGATGAGAGATTGTTCCCATGGAAAAGGAT
TTGACCGTCACCTTTTAGGCCTTTTGCTCATAGCAAAAGAGGAAGGCCTCCCTGTTCCAGAACT
GTTTGAGGATCCACTTTTCTCCAGAAGTGGAGGAGGTGGGAATTTTGTGCTGTCAACAAGTCTG
GTTGGTTACTTACGAATTCAGGGAGTCGTGGTTCCCATGGTACATAATGGATACGGCTTTTTCT
ACCACATCAGAGATGACAGGTTTGTGGTGACATGTTCATCCTGGAGGTCATGTCTTGAGACTGA
TGCAGAAAAGTTAGTGGAGATGATTTTTCATGCTTTCCACGATATGATACATCTGATGAACACG
GCTCATCTTTAGAGACTCAGAGACATACAGGTCACAGAAACTGGGTACGGAGAATGGGATGGTG
ATACGACATGGAAGGAATGTTGACTTAAAGGAAACCTGTTAATGCAGGGATTAGAGAGGGATGC
ACTCTAGATTTATTCTACCTTAAAGCCTTCTGTGTTGCAACAGCAATGCAAACTCAGACATAGT
GAATAGAACTATGCAATGTTTTAAGCCTCAACAATGCACATCTGTATATTTTAACAATACAAAT
CCTACTCTAATGTTAAAATATTTTTGTTGGCACATGTGTAGGTTGCAAGTCCTCTGTGAACATA
ATTATAGAGTATTTCTCAAGCACTTTAATACTTTCTAATGGCCAGAGGGTATAAAACCCATGGT
TAGATGCTAATTTCCCTGACATCAGTGCCTTCTACATCCAGCACAGGAGTACAAGCCTATGAGA
TTTCATGGGAAAACCACTATTGTTCAATATTGATCTAAAATAGCTCCTTTGAACAGACAAAAGT
ATCAAGTTGTATTAGAAAAGAATATTAGCAAAACTCATTATGATATGTTGTAATTAATTTTGTG
AATATAAAATCAAAACACTTCCATTTAAATCTACTTGGTAGAGTTAGTGGCTTTTAAAGGGTTA
AATGTCGAGTATGATTCTCAGAACTTTATAATTATTTCCCACTGTTATTCAAAATGTTAGCATA
TAGACATTCTCCCATTGTAATTCAGTGTTTATATTCTCAAAGAATAAAGCATCCAGAATCCTTG
TAATTTCTCATTTATTTTCAATAAAAATGATTCCTGA

hide sequence

RefSeq Acc Id:

XM_039108452 ⟹ XP_038964380

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,080,699 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108453 ⟹ XP_038964381

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,079,428 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108454 ⟹ XP_038964382

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,079,428 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108455 ⟹ XP_038964383

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,081,166 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108456 ⟹ XP_038964384

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,068,270 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108457 ⟹ XP_038964385

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,080,907 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108458 ⟹ XP_038964386

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,079,428 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108459 ⟹ XP_038964387

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,098,746 - 25,133,111 (+)	NCBI

RefSeq Acc Id:

XM_039108460 ⟹ XP_038964388

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	4	25,084,167 - 25,133,111 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_114193	(Get FASTA)	NCBI Sequence Viewer
	XP_006236066	(Get FASTA)	NCBI Sequence Viewer
	XP_006236067	(Get FASTA)	NCBI Sequence Viewer
	XP_038964380	(Get FASTA)	NCBI Sequence Viewer
	XP_038964381	(Get FASTA)	NCBI Sequence Viewer
	XP_038964382	(Get FASTA)	NCBI Sequence Viewer
	XP_038964383	(Get FASTA)	NCBI Sequence Viewer
	XP_038964384	(Get FASTA)	NCBI Sequence Viewer
	XP_038964385	(Get FASTA)	NCBI Sequence Viewer
	XP_038964386	(Get FASTA)	NCBI Sequence Viewer
	XP_038964387	(Get FASTA)	NCBI Sequence Viewer
	XP_038964388	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAA40948	(Get FASTA)	NCBI Sequence Viewer
	AAC52317	(Get FASTA)	NCBI Sequence Viewer
	AAH74004	(Get FASTA)	NCBI Sequence Viewer
	EDL84313	(Get FASTA)	NCBI Sequence Viewer
	EDL84314	(Get FASTA)	NCBI Sequence Viewer
	P11466	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:

NP_114193 ⟸ NM_031987

- Sequence:

show sequence

MENQLAKSIEERTFQYQDSLPPLPVPSLEESLKKYLESVKPFANEDEYKKTEEIVQKFQDGVGK
TLHQKLLERAKGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPSPHFEHYWPAREGTQLERGSIL
LWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHI
AVLCRGRAFVFDVLHDGCLITPPELLRQLTYIYQKCWNEPVGPSIAALTSEERTRWAKAREYLI
GLDPENLTLLEKIQSSLFVYSIEDTSPHATPENFSQVFEMLLGGDPAVRWGDKSYNLISFANGI
FGCSCDHAPYDAMLMVNIAHYVDEKLLETEGRWKGSEKVRDIPLPEELAFTVDEKILNDVYQAK
AQHLKAASDLQIAASTFTSFGKKLTKKEALHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFY
HGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLDAFAKHNKMMRDCSHGKGFDRHLLGLLL
IAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRIQGVVVPMVHNGYGFFYHIRDDRFVV
TCSSWRSCLETDAEKLVEMIFHAFHDMIHLMNTAHL

hide sequence

RefSeq Acc Id:	XP_006236067 ⟸ XM_006236005
- Peptide Label:	isoform X4
- UniProtKB:	Q6GMN6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENQLAKSIEERTFQYQDSLPPLPVPSLEESLKKYLESVKPFANEDEYKKTEEIVQKFQDGVGK TLHQKLLERAKGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPSPHFEHYWPAREGTQLERGSIL LWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHI AVLCRGRAFVFDVLHDGCLITPPELLRQLTYIYQKCWNEPVGPSIAALTSEERTRWAKAREYLI GLDPENLTLLEKIQSSLFVYSIEDTSPHATPENFSQVFEMLLGGDPAVRWGDKSYNLISFANGI FGCSCDHAPYDAMVMVNIAHYVDEKLLETEGRWKGSEKVRDIPLPEELAFTVDEKILNDVYQAK AQHLKAASDLQIAASTFTSFGKKLTKKEALHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFY HGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLDAFAKHNKMMRDCSHGKGFDRHLLGLLL IAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRIQGVVVPMVHNGYGFFYHIRDDRFVV TCSSWRSCLETDAEKLVEMIFHAFHDMIHLMNTAHL hide sequence

RefSeq Acc Id:

XP_006236066 ⟸ XM_006236004

- Peptide Label:

isoform X3

- Sequence:

show sequence

MQSGCAPRRPGQARAWCPQSISPFWFGVLTPSVAPALLECRSADRLFSYCDYTMENQLAKSIEE
RTFQYQDSLPPLPVPSLEESLKKYLESVKPFANEDEYKKTEEIVQKFQDGVGKTLHQKLLERAK
GKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPSPHFEHYWPAREGTQLERGSILLWHNLNYWQLL
RREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHIAVLCRGRAFVF
DVLHDGCLITPPELLRQLTYIYQKCWNEPVGPSIAALTSEERTRWAKAREYLIGLDPENLTLLE
KIQSSLFVYSIEDTSPHATPENFSQVFEMLLGGDPAVRWGDKSYNLISFANGIFGCSCDHAPYD
AMVMVNIAHYVDEKLLETEGRWKGSEKVRDIPLPEELAFTVDEKILNDVYQAKAQHLKAASDLQ
IAASTFTSFGKKLTKKEALHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFYHGRTETVRSCT
VEAVRWCQSMQDPSASLLERQQKMLDAFAKHNKMMRDCSHGKGFDRHLLGLLLIAKEEGLPVPE
LFEDPLFSRSGGGGNFVLSTSLVGYLRIQGVVVPMVHNGYGFFYHIRDDRFVVTCSSWRSCLET
DAEKLVEMIFHAFHDMIHLMNTAHL

hide sequence

RefSeq Acc Id:

XP_017448407 ⟸ XM_017592918

- Peptide Label:

isoform X2

- Sequence:

show sequence

MENQLAKSIEERTFQYQDSLPPLPVPSLEESLKKYLESVKPFANEDEYKKTEEIVQKFQDGVGK
TLHQKLLERAKGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPSPHFEHYWPAREGTQLERGSIL
LWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHI
AVLCRGRAFVFDVLHDGCLITPPELLRQLTYIYQKCWNEPVGPSIAALTSEERTRWAKAREYLI
GLDPENLTLLEKIQSSLFVYSIEDTSPHATPENFSQVFEMLLGGDPAVRWGDKSYNLISFANGI
FGCSCDHAPYDAMVMVNIAHYVDEKLLETEGRWKGSEKVRDIPLPEELAFTVDEKILNDVYQAK
AQHLKAASDLQIAASTFTSFGKKLTKKEALHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFY
HGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLDAFAKHNKMMRDCSHGKGFDRHLLGLLL
IAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRIQGVVVPMVHNGYGFFYHIRDDRFVV
TCSSWRSCLETDAEKLVEMIFHAFHDMIHLMNTAHL

hide sequence

RefSeq Acc Id:

XP_017448408 ⟸ XM_017592919

- Peptide Label:

isoform X2

- Sequence:

show sequence

MENQLAKSIEERTFQYQDSLPPLPVPSLEESLKKYLESVKPFANEDEYKKTEEIVQKFQDGVGK
TLHQKLLERAKGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPSPHFEHYWPAREGTQLERGSIL
LWHNLNYWQLLRREKLPVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPTHI
AVLCRGRAFVFDVLHDGCLITPPELLRQLTYIYQKCWNEPVGPSIAALTSEERTRWAKAREYLI
GLDPENLTLLEKIQSSLFVYSIEDTSPHATPENFSQVFEMLLGGDPAVRWGDKSYNLISFANGI
FGCSCDHAPYDAMVMVNIAHYVDEKLLETEGRWKGSEKVRDIPLPEELAFTVDEKILNDVYQAK
AQHLKAASDLQIAASTFTSFGKKLTKKEALHPDTFIQLALQLAYYRLHGRPGCCYETAMTRYFY
HGRTETVRSCTVEAVRWCQSMQDPSASLLERQQKMLDAFAKHNKMMRDCSHGKGFDRHLLGLLL
IAKEEGLPVPELFEDPLFSRSGGGGNFVLSTSLVGYLRIQGVVVPMVHNGYGFFYHIRDDRFVV
TCSSWRSCLETDAEKLVEMIFHAFHDMIHLMNTAHL

hide sequence

RefSeq Acc Id:

ENSRNOP00000063856 ⟸ ENSRNOT00000067462

RefSeq Acc Id:

ENSRNOP00000071087 ⟸ ENSRNOT00000090968

RefSeq Acc Id:

ENSRNOP00000073847 ⟸ ENSRNOT00000091799

RefSeq Acc Id:	XP_038964384 ⟸ XM_039108456
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964382 ⟸ XM_039108454
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964381 ⟸ XM_039108453
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964386 ⟸ XM_039108458
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038964380 ⟸ XM_039108452
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_038964385 ⟸ XM_039108457
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964383 ⟸ XM_039108455
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038964388 ⟸ XM_039108460
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038964387 ⟸ XM_039108459
- Peptide Label:	isoform X4

Protein Domains

Carn_acyltransf

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692826

Promoter ID:

EPDNEW_R3351

Type:

initiation region

Name:

Crot_1

Description:

carnitine O-octanoyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	22,081,564 - 22,081,624	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

ACI/EurMcwi (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

ACI/N (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

BBDP/Wor (RGD)

Visual

CSV

TAB

Printer

Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

BN/SsN (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Buf/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

COP/CrCrl (MCW & UW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

F344/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

F344/NRrrc (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

FHH/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHH/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

FHL/EurMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

GH/OmrMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LE/Stm (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/Crl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LEW/NCrlBR (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LH/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LL/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

LN/MavRrrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

M520/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

MHS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MNS/Gib (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

MR/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

SBH/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBH/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SBN/Ygl (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SBN/Ygl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHR/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SHRSP/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SR/JrHsd (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SR/JrHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/Jr (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

SS/JrHsdMcwi (MCW)

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Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.7.7 and GATK v3.2-2
Breeder:	Medical College of Wisconsin
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/JrHsdMcwi (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WAG/Rij (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/Gcrc (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

WKY/NCrl (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WKY/NHsd (RGD)

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Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA mem 0.7.15, GATK v.3.6-0
Description:	Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD

WN/N (MCW)

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Sequenced By:	Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen) Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform:	SOLiD 4 and 5500
Secondary Analysis:	liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder:	National Institutes of Health
Description:	Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	22043917	22043918	G	A	snv	DOB/Oda (KyushuU)
4	22043918	22043919	A	T	snv	DOB/Oda (KyushuU)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:70908	AgrOrtholog
Ensembl Genes	ENSRNOG00000006779	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000063856	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOP00000071087	UniProtKB/TrEMBL
	ENSRNOP00000073847	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000067462	ENTREZGENE, UniProtKB/TrEMBL
	ENSRNOT00000090968	UniProtKB/TrEMBL
	ENSRNOT00000091799	UniProtKB/TrEMBL
Gene3D-CATH	3.30.559.10	UniProtKB/TrEMBL
	3.30.559.40	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.30.559.70	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7098081	IMAGE-MGC_LOAD
InterPro	Carn_acyl_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CAT-like_dom_sf	UniProtKB/TrEMBL
	Cho/carn_acyl_trans	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cho/carn_acyl_trans_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cho/carn_acyl_trans_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:83842	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:91606	IMAGE-MGC_LOAD
NCBI Gene	83842	ENTREZGENE
PANTHER	PTHR22589	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	Carn_acyltransf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Crot	PhenoGen
PROSITE	ACYLTRANSF_C_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ACYLTRANSF_C_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A0G2JZK8_RAT	UniProtKB/TrEMBL
	OCTC_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q6GMN6	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	P48033	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2002-07-09	Crot	carnitine O-octanoyltransferase			Symbol and Name updated to reflect Human and Mouse nomenclature	70877	APPROVED

RGD Curation Notes

Note Type	Note	Reference
gene_regulation	activity is inhibited by malonyl-CoA	727629

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - SMPDB