Fam133b (family with sequence similarity 133, member B) - Rat Genome Database

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Gene: Fam133b (family with sequence similarity 133, member B) Rattus norvegicus
Analyze
Symbol: Fam133b
Name: family with sequence similarity 133, member B
RGD ID: 1306302
Description: Orthologous to several human genes including FAM133B (family with sequence similarity 133 member B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC362320; LOC362320; RGD1306302; similar to RIKEN cDNA 5830415L20
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,544,458 - 31,571,056 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl431,544,458 - 31,570,780 (-)EnsemblGRCr8
mRatBN7.2430,589,646 - 30,616,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,589,635 - 30,616,040 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx435,562,476 - 35,588,799 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,488,560 - 31,514,883 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,884,597 - 29,910,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,728,883 - 27,755,182 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,730,051 - 27,755,103 (-)Ensemblrn6Rnor6.0
Rnor_5.0427,632,125 - 27,658,802 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4427,305,922 - 27,332,221 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera426,014,093 - 26,040,392 (-)NCBICelera
RGSC_v3.1427,332,822 - 27,349,419 (-)NCBI
Cytogenetic Map4q13NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:22681889  


Genomics

Comparative Map Data
Fam133b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,544,458 - 31,571,056 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl431,544,458 - 31,570,780 (-)EnsemblGRCr8
mRatBN7.2430,589,646 - 30,616,291 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,589,635 - 30,616,040 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx435,562,476 - 35,588,799 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,488,560 - 31,514,883 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,884,597 - 29,910,919 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,728,883 - 27,755,182 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,730,051 - 27,755,103 (-)Ensemblrn6Rnor6.0
Rnor_5.0427,632,125 - 27,658,802 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4427,305,922 - 27,332,221 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera426,014,093 - 26,040,392 (-)NCBICelera
RGSC_v3.1427,332,822 - 27,349,419 (-)NCBI
Cytogenetic Map4q13NCBI
FAM133B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38792,560,758 - 92,590,390 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl792,560,758 - 92,590,393 (-)Ensemblhg38GRCh38
GRCh37792,190,072 - 92,219,704 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36792,028,008 - 92,057,642 (-)NCBIBuild 36Build 36hg18NCBI36
Celera786,894,604 - 86,924,236 (-)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef786,799,447 - 86,829,074 (-)NCBIHuRef
CHM1_1792,120,110 - 92,149,746 (-)NCBICHM1_1
T2T-CHM13v2.0793,802,706 - 93,832,343 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2791,519,294 - 91,548,926 (-)NCBI
Fam133b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3953,593,833 - 3,620,548 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl53,593,833 - 3,620,238 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3853,543,833 - 3,570,548 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl53,543,833 - 3,570,238 (+)Ensemblmm10GRCm38
MGSCv3753,543,833 - 3,570,548 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3653,549,850 - 3,575,817 (+)NCBIMGSCv36mm8
Celera53,479,777 - 3,506,492 (+)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.22NCBI
Fam133b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554329,484,972 - 9,502,485 (-)Ensembl
ChiLan1.0NW_0049554329,484,967 - 9,502,484 (-)NCBIChiLan1.0ChiLan1.0
FAM133B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26110,446,977 - 110,476,694 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17158,711,686 - 158,741,352 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0784,559,264 - 84,589,085 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1798,154,953 - 98,184,213 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl798,156,201 - 98,184,114 (-)EnsemblpanPan2panpan1.1
FAM133B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11418,145,882 - 18,168,367 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl130,781,898 - 30,783,509 (+)EnsemblcanFam3CanFam3.1
CanFam3.1 Ensembl1418,147,576 - 18,168,274 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1417,706,754 - 17,729,075 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01417,952,687 - 17,975,186 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1417,952,700 - 17,975,143 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11418,113,143 - 18,135,428 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01417,825,217 - 17,847,483 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01418,099,459 - 18,121,970 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam133b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511831,533,094 - 31,556,759 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049368031,243,268 - 1,265,292 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049368031,243,180 - 1,266,500 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM133B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl972,472,338 - 72,503,756 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1972,470,990 - 72,503,822 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2979,200,174 - 79,232,806 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM133B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12156,420,342 - 56,449,685 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604247,830,947 - 47,860,341 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam133b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624809597,656 - 640,691 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_004624809597,535 - 643,122 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Fam133b
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:159
Count of miRNA genes:118
Interacting mature miRNAs:137
Transcripts:ENSRNOT00000012253
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41794699962946999Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat

Markers in Region
RH140194  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2430,590,044 - 30,590,246 (+)MAPPERmRatBN7.2
Rnor_6.0427,729,210 - 27,729,411NCBIRnor6.0
Rnor_5.0427,632,524 - 27,632,725UniSTSRnor5.0
RGSC_v3.4427,306,249 - 27,306,450UniSTSRGSC3.4
Celera426,014,420 - 26,014,621UniSTS
Cytogenetic Map4q13UniSTS
BE106498  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X10,005,318 - 10,005,468 (+)MAPPERmRatBN7.2
Rnor_6.0X10,932,293 - 10,932,442NCBIRnor6.0
Rnor_5.0X11,730,875 - 11,731,024UniSTSRnor5.0
RGSC_v3.4X22,085,321 - 22,085,470UniSTSRGSC3.4
CeleraX10,531,080 - 10,531,229UniSTS
RH 3.4 MapX31.2UniSTS
Cytogenetic MapXq13UniSTS
Cytogenetic Map4q13UniSTS
RH137530  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2430,590,668 - 30,590,876 (+)MAPPERmRatBN7.2
mRatBN7.2X10,004,854 - 10,005,062 (+)MAPPERmRatBN7.2
Rnor_6.0X10,931,828 - 10,932,035NCBIRnor6.0
Rnor_6.0427,729,834 - 27,730,041NCBIRnor6.0
Rnor_5.0427,633,148 - 27,633,355UniSTSRnor5.0
Rnor_5.0X11,730,410 - 11,730,617UniSTSRnor5.0
RGSC_v3.4X22,084,857 - 22,085,064UniSTSRGSC3.4
RGSC_v3.4427,306,873 - 27,307,080UniSTSRGSC3.4
Celera426,015,044 - 26,015,251UniSTS
CeleraX10,530,616 - 10,530,823UniSTS
Cytogenetic MapXq13UniSTS
Cytogenetic Map4q13UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000012253   ⟹   ENSRNOP00000012253
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl431,544,458 - 31,570,780 (-)Ensembl
mRatBN7.2 Ensembl430,589,718 - 30,616,016 (-)Ensembl
Rnor_6.0 Ensembl427,730,051 - 27,755,103 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097111   ⟹   ENSRNOP00000078153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,589,635 - 30,605,018 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000111265   ⟹   ENSRNOP00000090523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl431,544,462 - 31,570,769 (-)Ensembl
mRatBN7.2 Ensembl430,589,848 - 30,616,040 (-)Ensembl
RefSeq Acc Id: NM_001024799   ⟹   NP_001019970
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,570,780 (-)NCBI
mRatBN7.2430,589,718 - 30,616,046 (-)NCBI
Rnor_6.0427,728,883 - 27,755,182 (-)NCBI
Rnor_5.0427,632,125 - 27,658,802 (-)NCBI
RGSC_v3.4427,305,922 - 27,332,221 (-)RGD
Celera426,014,093 - 26,040,392 (-)RGD
Sequence:
RefSeq Acc Id: XM_039107763   ⟹   XP_038963691
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,571,056 (-)NCBI
mRatBN7.2430,589,646 - 30,616,159 (-)NCBI
RefSeq Acc Id: XM_039107764   ⟹   XP_038963692
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,646 - 30,616,183 (-)NCBI
RefSeq Acc Id: XM_039107765   ⟹   XP_038963693
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,646 - 30,616,179 (-)NCBI
RefSeq Acc Id: XM_039107766   ⟹   XP_038963694
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,718 - 30,616,291 (-)NCBI
RefSeq Acc Id: XM_039107767   ⟹   XP_038963695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,556,514 (-)NCBI
mRatBN7.2430,589,718 - 30,616,286 (-)NCBI
RefSeq Acc Id: XM_063286232   ⟹   XP_063142302
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,570,623 (-)NCBI
RefSeq Acc Id: XM_063286233   ⟹   XP_063142303
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,571,056 (-)NCBI
RefSeq Acc Id: XM_063286234   ⟹   XP_063142304
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,544,458 - 31,571,056 (-)NCBI
RefSeq Acc Id: NP_001019970   ⟸   NM_001024799
- UniProtKB: Q505I5 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSRNOP00000012253   ⟸   ENSRNOT00000012253
RefSeq Acc Id: XP_038963692   ⟸   XM_039107764
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038963693   ⟸   XM_039107765
- Peptide Label: isoform X6
RefSeq Acc Id: XP_038963691   ⟸   XM_039107763
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ANF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038963694   ⟸   XM_039107766
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038963695   ⟸   XM_039107767
- Peptide Label: isoform X8
Ensembl Acc Id: ENSRNOP00000078153   ⟸   ENSRNOT00000097111
Ensembl Acc Id: ENSRNOP00000090523   ⟸   ENSRNOT00000111265
RefSeq Acc Id: XP_063142304   ⟸   XM_063286234
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063142303   ⟸   XM_063286233
- Peptide Label: isoform X3
- UniProtKB: A6K289 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063142302   ⟸   XM_063286232
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q505I5-F1-model_v2 AlphaFold Q505I5 1-245 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692851
Promoter ID:EPDNEW_R3375
Type:initiation region
Name:Fam133b_1
Description:family with sequence similarity 133, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0427,755,150 - 27,755,210EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1306302 AgrOrtholog
BioCyc Gene G2FUF-45760 BioCyc
Ensembl Genes ENSRNOG00000009163 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000012253 ENTREZGENE
  ENSRNOT00000111265 ENTREZGENE
IMAGE_CLONE IMAGE:7320019 IMAGE-MGC_LOAD
InterPro Fam133 UniProtKB/Swiss-Prot
KEGG Report rno:362320 UniProtKB/Swiss-Prot
MGC_CLONE MGC:105633 IMAGE-MGC_LOAD
NCBI Gene 362320 ENTREZGENE
PANTHER PROTEIN FAM133B UniProtKB/Swiss-Prot
  PTHR31911 UniProtKB/Swiss-Prot
PhenoGen Fam133b PhenoGen
RatGTEx ENSRNOG00000009163 RatGTEx
UniProt A0A8I5ZJP5_RAT UniProtKB/TrEMBL
  A0A8I6ANF8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2Q616_RAT UniProtKB/TrEMBL
  A6K289 ENTREZGENE, UniProtKB/TrEMBL
  F133B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-07 Fam133b  family with sequence similarity 133, member B  RGD1306302  similar to RIKEN cDNA 5830415L20  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-12-06 RGD1306302  similar to RIKEN cDNA 5830415L20  RGD1306302_predicted  similar to RIKEN cDNA 5830415L20 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-20 RGD1306302_predicted  similar to RIKEN cDNA 5830415L20 (predicted)  LOC362320_predicted    Symbol and Name status set to approved 1331353 APPROVED
2005-01-12 LOC362320_predicted  similar to RIKEN cDNA 5830415L20 (predicted)      Symbol and Name status set to provisional 70820 PROVISIONAL