 Gene Ontology AnnotationsReferences - curatedGenomics
Position Markers
QTLs in Region (Rnor_6.0)
RGD ID | Symbol | Name | LOD | P Value | Trait | Sub Trait | Chr | Start | Stop | Species | 9589046 | Scfw2 | Subcutaneous fat weight QTL 2 | 5.54 | 0.001 | subcutaneous adipose mass (VT:1000472) | abdominal subcutaneous fat pad weight (CMO:0002069) | 4 | 1 | 28352196 | Rat | 9589097 | Slep11 | Serum leptin concentration QTL 11 | 5.09 | 0.001 | blood leptin amount (VT:0005667) | plasma leptin level (CMO:0000781) | 4 | 1 | 28352196 | Rat | 9590100 | Sffal4 | Serum free fatty acids level QTL 4 | 7.36 | 0.05 | blood free fatty acid amount (VT:0001553) | plasma free fatty acids level (CMO:0000546) | 4 | 1 | 28352196 | Rat | 8552903 | Pigfal2 | Plasma insulin-like growth factor 1 level QTL 2 | 7.3 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 4 | 1 | 28352196 | Rat | 1357343 | Gluco4 | Glucose level QTL 4 | 0.00002 | adipocyte glucose uptake trait (VT:0004185) | adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874) | 4 | 1 | 29778604 | Rat | 1357341 | Gluco5 | Glucose level QTL 5 | 6.4 | adipocyte free fatty acid secretion trait (VT:0010465) | absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446) | 4 | 1 | 29778604 | Rat | 738021 | Hcar13 | Hepatocarcinoma resistance QTL 13 | 4.3 | liver integrity trait (VT:0010547) | liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464) | 4 | 1 | 31554484 | Rat | 634323 | Hc2 | Hypercalciuria QTL 2 | 2.15 | urine calcium amount (VT:0002985) | urine calcium excretion rate (CMO:0000763) | 4 | 1 | 42118977 | Rat | 619616 | Bp79 | Blood pressure QTL 79 | 0.0292 | arterial blood pressure trait (VT:2000000) | systolic blood pressure (CMO:0000004) | 4 | 3043231 | 79575658 | Rat | 2303168 | Bp330 | Blood pressure QTL 330 | 4.25 | 0.017 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 4 | 3043231 | 145254791 | Rat | 2302371 | Stl22 | Serum triglyceride level QTL 22 | 5.15 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 4 | 3044017 | 55791834 | Rat | 1358203 | Stl19 | Serum triglyceride level QTL 19 | 2.8 | 0.002 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 4 | 3044017 | 64915903 | Rat | 631642 | Stl2 | Serum triglyceride level QTL 2 | 3.3 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 4 | 3047807 | 55324857 | Rat | 631209 | Bw2 | Body weight QTL2 | 4.2 | retroperitoneal fat pad mass (VT:0010430) | retroperitoneal fat pad weight to body weight ratio (CMO:0000635) | 4 | 6467693 | 43414792 | Rat | 1300141 | Bp178 | Blood pressure QTL 178 | arterial blood pressure trait (VT:2000000) | mean arterial blood pressure (CMO:0000009) | 4 | 6572939 | 37703537 | Rat | 631261 | Tcas3 | Tongue tumor susceptibility QTL 3 | 6.88 | tongue integrity trait (VT:0010553) | number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950) | 4 | 7342404 | 92484039 | Rat | 2316958 | Gluco58 | Glucose level QTL 58 | 10 | blood glucose amount (VT:0000188) | blood glucose level (CMO:0000046) | 4 | 7850904 | 182171018 | Rat | 9590304 | Scort17 | Serum corticosterone level QTL 17 | 4.96 | 0.001 | blood corticosterone amount (VT:0005345) | plasma corticosterone level (CMO:0001173) | 4 | 8052189 | 53052189 | Rat | 6478724 | Anxrr35 | Anxiety related response QTL 35 | 0.00449 | defecation behavior trait (VT:0010462) | defecation measurement (CMO:0000997) | 4 | 8052189 | 53052189 | Rat | 6478766 | Anxrr47 | Anxiety related response QTL 47 | 0.09637 | locomotor behavior trait (VT:0001392) | number of entries into a discrete space in an experimental apparatus (CMO:0000960) | 4 | 8052189 | 53052189 | Rat | 6478769 | Anxrr48 | Anxiety related response QTL 48 | 0.02514 | locomotor behavior trait (VT:0001392) | amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958) | 4 | 8052189 | 53052189 | Rat | 8552906 | Pigfal3 | Plasma insulin-like growth factor 1 level QTL 3 | blood insulin-like growth factor amount (VT:0010479) | plasma insulin-like growth factor 1 level (CMO:0001299) | 4 | 8052189 | 53052189 | Rat | 8694374 | Bw155 | Body weight QTL 155 | 3.39 | 0.001 | body lean mass (VT:0010483) | lean tissue morphological measurement (CMO:0002184) | 4 | 8052189 | 53052189 | Rat | 2303585 | Bw86 | Body weight QTL 86 | 4 | body mass (VT:0001259) | body weight (CMO:0000012) | 4 | 12638974 | 57638974 | Rat | 7387227 | Uae40 | Urinary albumin excretion QTL 40 | 2.9 | 0.0052 | urine albumin amount (VT:0002871) | urine albumin excretion rate (CMO:0000757) | 4 | 16149941 | 61149941 | Rat | 70222 | Eae2 | Experimental allergic encephalomyelitis QTL 2 | 4.3 | nervous system integrity trait (VT:0010566) | experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046) | 4 | 18222187 | 37685319 | Rat | 1354665 | Stl10 | Serum triglyceride level QTL 10 | 3.57 | blood triglyceride amount (VT:0002644) | serum triglyceride level (CMO:0000360) | 4 | 18222187 | 43414792 | Rat | 61412 | Pia2 | Pristane induced arthritis QTL 2 | 3.9 | joint integrity trait (VT:0010548) | post-insult time to onset of experimental arthritis (CMO:0001450) | 4 | 18222187 | 61039065 | Rat | 8552803 | Bw144 | Body weight QTL 144 | 16 | body mass (VT:0001259) | change in body weight to body weight ratio (CMO:0002216) | 4 | 19618866 | 31825560 | Rat | 10755501 | Bp390 | Blood pressure QTL 390 | 2.5 | arterial blood pressure trait (VT:2000000) | diastolic blood pressure (CMO:0000005) | 4 | 23850384 | 169318094 | Rat | 6909122 | Insul22 | Insulin level QTL 22 | 4.63 | blood insulin amount (VT:0001560) | plasma insulin level (CMO:0000342) | 4 | 23991721 | 76238799 | Rat | 6909128 | Pancm4 | Pancreatic morphology QTL 4 | 11.35 | pancreas mass (VT:0010144) | pancreas wet weight (CMO:0000626) | 4 | 23991721 | 76238799 | Rat | 1578655 | Bmd11 | Bone mineral density QTL 11 | 11 | femur mineral mass (VT:0010011) | total volumetric bone mineral density (CMO:0001728) | 4 | 24631874 | 69631874 | Rat | 8655906 | Rf60 | Renal function QTL 60 | 3.8 | blood creatinine amount (VT:0005328) | creatinine clearance (CMO:0000765) | 4 | 26654749 | 81874227 | Rat | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
miRNA Target Status
Predicted Target Of
| The detailed report is available here: |  | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 7 | ||||||||||||
| Low | 15 | 21 | 5 | 19 | 5 | 8 | 10 | 16 | 9 | 10 | 10 | 8 | |
| Below cutoff | 3 | 28 | 23 | 23 | 23 | 1 | 58 | 26 | 22 | 1 |
View RNA-SEQ Expression Data
Sequence
Nucleotide SequencesReference Sequences
| RefSeq Acc Id: | ENSRNOT00000068499 ⟹ ENSRNOP00000060110 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | XM_006224821 ⟹ XP_006224883 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
TGTACACTTATACAATCAGGTTGTGAAATAGAACAGTGCACAGTTGTGCCAGTCCCAGAGGCTGhide sequence |
| RefSeq Acc Id: | XM_006236077 ⟹ XP_006236139 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
TGTACACTTATACAATCAGGTTGTGAAATAGAACAGTGCACAGTTGTGCCAGTCCCAGAGGCTGhide sequence |
Protein Sequences| Protein RefSeqs | XP_006224883 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006236139 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | XP_006224883 ⟸ XM_006224821 |
| - UniProtKB: | F1LX06 (UniProtKB/TrEMBL) |
| - Sequence: |
MEQRALKKLVESFRKTVKCFKKFEVECLIQLFYSLAGCPIGKVDNTKLDCNAFRGVLQNFFGMThide sequence |
| RefSeq Acc Id: | XP_006236139 ⟸ XM_006236077 |
| - UniProtKB: | F1LX06 (UniProtKB/TrEMBL) |
| - Sequence: |
MEQRALKKLVESFRKTVKCFKKFEVECLIQLFYSLAGCPIGKVDNTKLDCNAFRGVLQNFFGMThide sequence |
| RefSeq Acc Id: | ENSRNOP00000060110 ⟸ ENSRNOT00000068499 |
Protein Domains
EF-hand
TranscriptomePromoters| RGD ID: | 13692861 | ||||||||
| Promoter ID: | EPDNEW_R3374 | ||||||||
| Type: | single initiation site | ||||||||
| Name: | LOC500007_1 | ||||||||
| Description: | similar to EF hand calcium binding domain 1 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Variation
Strain Sequence Variants (Rnor 6.0)
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Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1588445 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000009135 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000060110 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000068499 | ENTREZGENE, UniProtKB/TrEMBL |
| InterPro | EF-hand-dom_pair | UniProtKB/TrEMBL |
| EF_Hand_1_Ca_BS | UniProtKB/TrEMBL | |
| EF_hand_dom | UniProtKB/TrEMBL | |
| Recoverin | UniProtKB/TrEMBL | |
| KEGG Report | rno:500007 | UniProtKB/TrEMBL |
| NCBI Gene | 500007 | ENTREZGENE |
| PANTHER | PTHR23055 | UniProtKB/TrEMBL |
| Pfam | EF-hand_7 | UniProtKB/TrEMBL |
| PhenoGen | LOC500007 | PhenoGen |
| PROSITE | EF_HAND_1 | UniProtKB/TrEMBL |
| EF_HAND_2 | UniProtKB/TrEMBL | |
| SMART | EFh | UniProtKB/TrEMBL |
| Superfamily-SCOP | SSF47473 | UniProtKB/TrEMBL |
| UniProt | F1LX06 | ENTREZGENE, UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2006-11-19 | LOC500007 | similar to EF hand calcium binding domain 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
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| More on LOC500007 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1588445 |
| Created: | 2006-11-19 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
