Bp179 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Bp179 (Blood pressure QTL 179) Rattus norvegicus

Symbol: Bp179
Name: Blood pressure QTL 179
RGD ID: 1300156
Previously known as: Specialized Center of Research QTL 13; SCOR13
Trait: arterial blood pressure trait   (VT:2000000)    
Measurement Type: mean arterial blood pressure   (CMO:0000009)    
LOD Score: 2.85
P Value: Not Available
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2438,465,774 - 39,524,530RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.0436,615,599 - 37,703,537RGD_MAPPER_PIPELINERnor6.0
Rnor_5.0436,467,227 - 37,552,486RGDRnor5.0
RGSC_v3.4415,744,638 - 36,612,108RGDRGSC3.4
RGSC_v3.1415,657,894 - 36,730,648RGD
Cross Type: Not Available
Strains Crossed: BN/SsNHsd SS/JrHsdMcwi 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View
hypertension  (IDA)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Clinical Measurement

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN/SsNHsd  (IEA)
SS/JrHsdMcwi  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Genomic map of cardiovascular phenotypes of hypertension in female Dahl S rats. Moreno C, etal., Physiol Genomics 2003 Nov 11;15(3):243-57. Epub 2003 Oct 07.
Related QTLs

Related QTL Description Reference
Bp178 maps to same region RGD:727992


Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
1585825Hmgn1l1high mobility group nucleosomal binding domain 1 like 143860485638606026Rat
40971411LOC120102154uncharacterized LOC12010215443864163538646263Rat
41248065LOC120102234uncharacterized LOC12010223443890194838907419Rat
2322154Psma6-ps3proteasome 20S subunit alpha 6, pseudogene 343919157039192321Rat
1562387Gtpbp4-ps3GTP binding protein 4, pseudogene 343939107939425066Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
34238D4Mgh225043952426439524530Ratregion
34716D4Mgh1413343950527539505420Ratregion
35847D4Rat1214643846577438465927Ratregion
38628D4Rat13022243865742738657645Ratregion
42158D4Arb2613043950527539505418Ratregion
42691D4Rat22321243884718238847397Ratregion
42691D4Rat22321243884718238847569Ratregion
43782D4Got2017943854696138547140Ratregion
43787D4Got2517643896180238961978Ratregion
625773D4Got2317343854696938547140Ratregion
1627175D4Uia1043928891439289215Ratregion
Position Markers

Flank 1: (D4Rat12)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2438,465,774 - 38,465,927 (+)MAPPER
Rnor_6.0436,615,599 - 36,615,751NCBI
Rnor_5.0436,467,227 - 36,467,379UniSTS
Celera433,924,454 - 33,924,606UniSTS
RH 3.4 Map4184.6UniSTS
RH 3.4 Map4184.6RGD
RH 2.0 Map4272.0RGD
SHRSP x BN Map420.45RGD
FHH x ACI Map423.22RGD
Peak: (D4Rat126)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2429,494,195 - 29,494,328 (+)MAPPER
Rnor_6.0426,654,749 - 26,654,881NCBI
Rnor_5.0426,562,048 - 26,562,180UniSTS
RGSC_v3.4426,178,307 - 26,178,440RGD
RGSC_v3.4426,178,308 - 26,178,440UniSTS
RGSC_v3.1426,194,205 - 26,194,337RGD
Celera424,926,365 - 24,926,497UniSTS
RH 3.4 Map4168.9UniSTS
RH 3.4 Map4168.9RGD
RH 2.0 Map4187.8RGD
SHRSP x BN Map411.3899RGD
FHH x ACI Map414.3099RGD
Flank 2: (D4Mgh2)
Rat AssemblyChrPosition (strand)Source
mRatBN7.2439,524,264 - 39,524,530 (+)MAPPER
Rnor_6.0437,703,272 - 37,703,537NCBI
Rnor_5.0437,552,221 - 37,552,486UniSTS
RGSC_v3.4436,611,842 - 36,612,108RGD
RGSC_v3.4436,611,843 - 36,612,108UniSTS
RGSC_v3.1436,730,383 - 36,730,648RGD
Celera434,962,419 - 34,962,668UniSTS
RH 3.4 Map4219.81UniSTS
RH 3.4 Map4219.81RGD
SHRSP x BN Map421.52UniSTS
SHRSP x BN Map421.52RGD
Cytogenetic Map4 RGD


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1300156Bp179Blood pressure QTL 1792.85arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)43846577439524530Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Bp179

RGD Curation Notes
Note Type Note Reference
qtl_general additional information, including phenotype and mapping information, can be found at Genomic Map of Cardiovascular Phenotypes 727992
qtl_general mean blood pressure, high versus low salt diet, averaged over 3 hours with lights on and animal asleep (SCOR13) 727992