Rps29-ps20 (ribosomal protein S29, pseudogene 20) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Rps29-ps20 (ribosomal protein S29, pseudogene 20) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps29-ps20
Name: ribosomal protein S29, pseudogene 20
RGD ID: 11435887
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Orthologous to human RPL29 (ribosomal protein L29).
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 60S ribosomal protein L29 pseudogene; 60S ribosomal protein L29-like; large ribosomal subunit protein eL29-like; LOC108350852; ribosomal protein S29 like 1; Rps29l1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8434,630,558 - 34,631,089 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl434,630,575 - 34,631,045 (-)EnsemblGRCr8
mRatBN7.2433,664,050 - 33,666,091 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl433,664,050 - 33,664,520 (-)EnsemblmRatBN7.2
Rnor_6.0430,619,020 - 30,619,526 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Celera429,190,618 - 29,191,124 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Rps29-ps20
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41794699962946999Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
sensory system
visual system
2 4 4 4 12 8 7 2 4 2 2

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063286821 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000050331   ⟹   ENSRNOP00000088373
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl434,630,575 - 34,631,045 (-)Ensembl
mRatBN7.2 Ensembl433,664,050 - 33,664,520 (-)Ensembl
Rnor_6.0 Ensembl430,619,020 - 30,619,490 (-)Ensembl
RefSeq Acc Id: XM_063286821   ⟹   XP_063142891
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8434,630,558 - 34,631,089 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063142891 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041744.4
  ENSRNOP00000088373
  ENSRNOP00000088373.1
Ensembl Acc Id: ENSRNOP00000088373   ⟸   ENSRNOT00000050331
RefSeq Acc Id: XP_063142891   ⟸   XM_063286821
- UniProtKB: A0A8I6AIR9 (UniProtKB/TrEMBL),   F1LYI5 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:11435887 AgrOrtholog
BioCyc Gene G2FUF-45703 BioCyc
Ensembl Genes ENSRNOG00000033695 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000037172 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000050117.5 UniProtKB/TrEMBL
  ENSRNOT00000050331 ENTREZGENE
  ENSRNOT00000050331.6 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1730 UniProtKB/TrEMBL
InterPro Ribosomal_L29e UniProtKB/TrEMBL
NCBI Gene LOC108350852 ENTREZGENE
PANTHER 60S RIBOSOMAL PROTEIN L29 UniProtKB/TrEMBL
  PTHR12884 UniProtKB/TrEMBL
Pfam Ribosomal_L29e UniProtKB/TrEMBL
PhenoGen Rps29-ps20 PhenoGen
RatGTEx ENSRNOG00000033695 RatGTEx
  ENSRNOG00000037172 RatGTEx
UniProt A0A8I6AIR9 ENTREZGENE, UniProtKB/TrEMBL
  F1LYI5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-12-01 Rps29-ps20  ribosomal protein S29, pseudogene 20  Rps29l1  ribosomal protein S29 like 1  Name and Symbol changed 629549 APPROVED
2023-09-19 Rps29l1  ribosomal protein S29 like 1  LOC108350852  60S ribosomal protein L29 pseudogene  Symbol and Name Changed 1299863 APPROVED
2016-08-02 LOC108350852  60S ribosomal protein L29 pseudogene      Symbol and Name status set to provisional 70820 PROVISIONAL