Phf14 (PHD finger protein 14) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Phf14 (PHD finger protein 14) Rattus norvegicus
Analyze
Symbol: Phf14
Name: PHD finger protein 14
RGD ID: 1563764
Description: Predicted to enable histone binding activity. Predicted to be involved in germinal center B cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including lung alveolus development; negative regulation of mesenchymal cell proliferation involved in lung development; and negative regulation of platelet-derived growth factor receptor-alpha signaling pathway. Predicted to be located in chromatin; cytoplasm; and nucleus. Orthologous to human PHF14 (PHD finger protein 14); INTERACTS WITH 1,2-dimethylhydrazine; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC500030; RGD1563764; similar to PHD finger protein 14 isoform 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2440,009,691 - 40,195,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl440,009,264 - 40,195,885 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx444,996,579 - 45,165,989 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0440,922,781 - 41,092,192 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0439,326,300 - 39,495,708 (+)NCBIRnor_WKY
Rnor_6.0438,241,189 - 38,420,199 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl438,240,728 - 38,420,205 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0438,078,577 - 38,258,235 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4437,147,379 - 37,253,334 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera435,435,842 - 35,519,141 (+)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:22730381  


Genomics

Comparative Map Data
Phf14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2440,009,691 - 40,195,870 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl440,009,264 - 40,195,885 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx444,996,579 - 45,165,989 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0440,922,781 - 41,092,192 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0439,326,300 - 39,495,708 (+)NCBIRnor_WKY
Rnor_6.0438,241,189 - 38,420,199 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl438,240,728 - 38,420,205 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0438,078,577 - 38,258,235 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4437,147,379 - 37,253,334 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera435,435,842 - 35,519,141 (+)NCBICelera
Cytogenetic Map4q21NCBI
PHF14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38710,973,872 - 11,169,618 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl710,973,336 - 11,169,623 (+)EnsemblGRCh38hg38GRCh38
GRCh37711,013,499 - 11,209,245 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36710,980,041 - 11,175,770 (+)NCBINCBI36Build 36hg18NCBI36
Build 34710,786,755 - 10,916,522NCBI
Celera710,988,278 - 11,184,064 (+)NCBICelera
Cytogenetic Map7p21.3NCBI
HuRef710,871,710 - 11,067,466 (+)NCBIHuRef
CHM1_1711,014,060 - 11,209,823 (+)NCBICHM1_1
T2T-CHM13v2.0711,104,462 - 11,300,224 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2711,067,044 - 11,262,833 (+)NCBI
Phf14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39611,907,728 - 12,100,155 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl611,907,808 - 12,081,204 (+)EnsemblGRCm39 Ensembl
GRCm38611,907,725 - 12,100,156 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl611,907,809 - 12,081,205 (+)EnsemblGRCm38mm10GRCm38
MGSCv37611,875,881 - 12,031,198 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36611,875,881 - 11,958,012 (+)NCBIMGSCv36mm8
Celera612,018,537 - 12,179,864 (+)NCBICelera
Cytogenetic Map6A1NCBI
Phf14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543217,535,224 - 17,697,936 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543217,535,222 - 17,807,106 (+)NCBIChiLan1.0ChiLan1.0
PHF14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.1710,972,523 - 11,169,377 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl710,972,503 - 11,169,377 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0711,608,934 - 11,822,039 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PHF14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11425,907,955 - 26,089,666 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1425,914,188 - 26,125,766 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1425,490,268 - 25,706,731 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01425,717,801 - 25,935,411 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1425,717,924 - 25,943,151 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11425,886,137 - 26,102,950 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01425,615,308 - 25,832,273 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01425,869,132 - 26,085,885 (+)NCBIUU_Cfam_GSD_1.0
Phf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511839,464,583 - 39,648,117 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936761561,443 - 768,792 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936761585,261 - 768,794 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHF14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl980,678,207 - 80,866,146 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1980,677,185 - 80,866,160 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2988,596,841 - 88,786,401 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHF14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12147,013,239 - 47,213,030 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2147,013,251 - 47,212,968 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604257,227,594 - 57,432,108 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phf14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248278,122,307 - 8,366,113 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248278,122,179 - 8,337,721 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phf14
911 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:126
Count of miRNA genes:96
Interacting mature miRNAs:111
Transcripts:ENSRNOT00000047029, ENSRNOT00000065649
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
4889511Gluco61Glucose level QTL 614.70.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795040869000Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat

Markers in Region
D4Rat211  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,193,496 - 40,193,597 (+)MAPPERmRatBN7.2
Rnor_6.0438,417,819 - 38,417,919NCBIRnor6.0
Rnor_5.0438,255,855 - 38,255,955UniSTSRnor5.0
RGSC_v3.4437,341,251 - 37,341,351RGDRGSC3.4
RGSC_v3.4437,341,251 - 37,341,351UniSTSRGSC3.4
RGSC_v3.1437,459,791 - 37,459,891RGD
Celera435,597,962 - 35,598,062UniSTS
RH 3.4 Map4222.5RGD
RH 3.4 Map4222.5UniSTS
FHH x ACI Map423.1799RGD
FHH x ACI Map423.1799UniSTS
Cytogenetic Map4q21UniSTS
D4Got26  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,193,312 - 40,193,610 (+)MAPPERmRatBN7.2
Rnor_6.0438,417,635 - 38,417,932NCBIRnor6.0
Rnor_5.0438,255,671 - 38,255,968UniSTSRnor5.0
RGSC_v3.4437,341,066 - 37,341,364RGDRGSC3.4
RGSC_v3.4437,341,067 - 37,341,364UniSTSRGSC3.4
RGSC_v3.1437,459,607 - 37,459,904RGD
Celera435,597,778 - 35,598,075UniSTS
RH 3.4 Map4220.61RGD
RH 3.4 Map4220.61UniSTS
Cytogenetic Map4q21UniSTS
RH135354  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2440,158,488 - 40,158,679 (+)MAPPERmRatBN7.2
Rnor_6.0438,388,126 - 38,388,316NCBIRnor6.0
Rnor_5.0438,225,519 - 38,225,709UniSTSRnor5.0
RGSC_v3.4437,301,217 - 37,301,407UniSTSRGSC3.4
Celera435,567,006 - 35,567,196UniSTS
RH 3.4 Map4222.3UniSTS
Cytogenetic Map4q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 36 38 22 19 22 6 6 74 35 41 11 6
Low 7 19 19 19 2 5 2
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001110492 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398908 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001398909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_174140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236111 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592776 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017592777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108097 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AY383666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ209867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ221829 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000047029   ⟹   ENSRNOP00000044448
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,009,264 - 40,040,597 (+)Ensembl
Rnor_6.0 Ensembl438,240,728 - 38,272,055 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000065649   ⟹   ENSRNOP00000059404
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,023,724 - 40,110,602 (+)Ensembl
Rnor_6.0 Ensembl438,255,182 - 38,340,127 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000089897   ⟹   ENSRNOP00000074287
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,023,760 - 40,195,876 (+)Ensembl
Rnor_6.0 Ensembl438,255,413 - 38,420,205 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094938   ⟹   ENSRNOP00000089184
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,009,652 - 40,195,876 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000099466   ⟹   ENSRNOP00000082992
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,009,264 - 40,040,520 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000103513   ⟹   ENSRNOP00000079696
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,023,724 - 40,195,797 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000106332   ⟹   ENSRNOP00000095907
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,023,998 - 40,195,885 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108109   ⟹   ENSRNOP00000077762
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,023,724 - 40,144,956 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000120231   ⟹   ENSRNOP00000098004
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl440,024,563 - 40,150,744 (+)Ensembl
RefSeq Acc Id: NM_001110492   ⟹   NP_001103962
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2440,023,724 - 40,110,602 (+)NCBI
Rnor_6.0438,255,182 - 38,340,127 (+)NCBI
Rnor_5.0438,078,577 - 38,258,235 (+)NCBI
RGSC_v3.4437,147,379 - 37,253,334 (+)RGD
Celera435,435,842 - 35,519,141 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236104   ⟹   XP_006236166
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2440,023,443 - 40,195,870 (+)NCBI
Rnor_6.0438,255,204 - 38,420,199 (+)NCBI
Rnor_5.0438,078,577 - 38,258,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236105   ⟹   XP_006236167
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2440,009,691 - 40,195,870 (+)NCBI
Rnor_6.0438,241,189 - 38,420,199 (+)NCBI
Rnor_5.0438,078,577 - 38,258,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236107   ⟹   XP_006236169
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2440,023,443 - 40,195,870 (+)NCBI
Rnor_6.0438,255,204 - 38,420,199 (+)NCBI
Rnor_5.0438,078,577 - 38,258,235 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108097   ⟹   XP_038964025
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2440,023,443 - 40,195,870 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_001103962   ⟸   NM_001110492
- UniProtKB: G3V9T6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236167   ⟸   XM_006236105
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006236166   ⟸   XM_006236104
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006236169   ⟸   XM_006236107
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSRNOP00000059404   ⟸   ENSRNOT00000065649
RefSeq Acc Id: ENSRNOP00000074287   ⟸   ENSRNOT00000089897
RefSeq Acc Id: ENSRNOP00000044448   ⟸   ENSRNOT00000047029
RefSeq Acc Id: XP_038964025   ⟸   XM_039108097
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000095907   ⟸   ENSRNOT00000106332
RefSeq Acc Id: ENSRNOP00000089184   ⟸   ENSRNOT00000094938
RefSeq Acc Id: ENSRNOP00000079696   ⟸   ENSRNOT00000103513
RefSeq Acc Id: ENSRNOP00000077762   ⟸   ENSRNOT00000108109
RefSeq Acc Id: ENSRNOP00000098004   ⟸   ENSRNOT00000120231
RefSeq Acc Id: ENSRNOP00000082992   ⟸   ENSRNOT00000099466
Protein Domains
PHD-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K7P2-F1-model_v2 AlphaFold A0A0G2K7P2 1-928 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692879
Promoter ID:EPDNEW_R3404
Type:initiation region
Name:Phf14_1
Description:PHD finger protein 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3405  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0438,255,218 - 38,255,278EPDNEW
RGD ID:13692882
Promoter ID:EPDNEW_R3405
Type:initiation region
Name:Phf14_2
Description:PHD finger protein 14
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3404  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0438,255,457 - 38,255,517EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563764 AgrOrtholog
BioCyc Gene G2FUF-45633 BioCyc
Ensembl Genes ENSRNOG00000005775 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000044448.1 UniProtKB/TrEMBL
  ENSRNOP00000059404 ENTREZGENE
  ENSRNOP00000059404.1 UniProtKB/TrEMBL
  ENSRNOP00000074287 ENTREZGENE
  ENSRNOP00000074287.2 UniProtKB/TrEMBL
  ENSRNOP00000077762.1 UniProtKB/TrEMBL
  ENSRNOP00000079696 ENTREZGENE
  ENSRNOP00000079696.1 UniProtKB/TrEMBL
  ENSRNOP00000082992.1 UniProtKB/TrEMBL
  ENSRNOP00000089184 ENTREZGENE
  ENSRNOP00000089184.1 UniProtKB/TrEMBL
  ENSRNOP00000095907 ENTREZGENE
  ENSRNOP00000095907.1 UniProtKB/TrEMBL
  ENSRNOP00000098004.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047029.4 UniProtKB/TrEMBL
  ENSRNOT00000065649 ENTREZGENE
  ENSRNOT00000065649.3 UniProtKB/TrEMBL
  ENSRNOT00000089897 ENTREZGENE
  ENSRNOT00000089897.2 UniProtKB/TrEMBL
  ENSRNOT00000094938 ENTREZGENE
  ENSRNOT00000094938.1 UniProtKB/TrEMBL
  ENSRNOT00000099466.1 UniProtKB/TrEMBL
  ENSRNOT00000103513 ENTREZGENE
  ENSRNOT00000103513.1 UniProtKB/TrEMBL
  ENSRNOT00000106332 ENTREZGENE
  ENSRNOT00000106332.1 UniProtKB/TrEMBL
  ENSRNOT00000108109.1 UniProtKB/TrEMBL
  ENSRNOT00000120231.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9025134 IMAGE-MGC_LOAD
InterPro EPHD UniProtKB/TrEMBL
  Zinc_finger_PHD-type_CS UniProtKB/TrEMBL
  Znf_FYVE_PHD UniProtKB/TrEMBL
  Znf_PHD UniProtKB/TrEMBL
  Znf_PHD-finger UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
KEGG Report rno:500030 UniProtKB/TrEMBL
MGC_CLONE MGC:187735 IMAGE-MGC_LOAD
NCBI Gene 500030 ENTREZGENE
Pfam PHD UniProtKB/TrEMBL
PhenoGen Phf14 PhenoGen
PROSITE EPHD UniProtKB/TrEMBL
  ZF_PHD_1 UniProtKB/TrEMBL
  ZF_PHD_2 UniProtKB/TrEMBL
SMART PHD UniProtKB/TrEMBL
Superfamily-SCOP FYVE_PHD_ZnF UniProtKB/TrEMBL
UniProt A0A0G2K7P2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5Y7V8_RAT UniProtKB/TrEMBL
  A0A8I5ZNB3_RAT UniProtKB/TrEMBL
  A0A8I5ZZ10_RAT UniProtKB/TrEMBL
  A0A8I6ASF3_RAT UniProtKB/TrEMBL
  A0A8I6ASZ4_RAT UniProtKB/TrEMBL
  B2GUY7 ENTREZGENE, UniProtKB/TrEMBL
  G3V9T6 ENTREZGENE, UniProtKB/TrEMBL
  Q6TXI8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Phf14  PHD finger protein 14  RGD1563764_predicted  similar to PHD finger protein 14 isoform 1 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563764_predicted  similar to PHD finger protein 14 isoform 1 (predicted)  LOC500030  similar to PHD finger protein 14 isoform 1  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500030  similar to PHD finger protein 14 isoform 1      Symbol and Name status set to provisional 70820 PROVISIONAL