 Gene Ontology Annotations | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Cellular Component
Molecular Function
 |
Welcome {{ username}}
Message Center
{{ messageCount }} Messages
Watched Genes
{{$index + 1}}. {{ watchedObject.symbol }} (RGD ID:{{watchedObject.rgdId}})
Watched Ontology Terms
{{gene.symbol}}: {{ gene.description }}
Save List to My RGD
| Create Name: | |
| Description: |
|
| Save what matters to you |
| {{ loginError }} |
| Sign in with your RGD account |
| Create New Account | Recover Password |
{{ watchLinkText }}
Select categories you would like to watch. Updates to this gene will be send to {{ username }}
Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
 Gviewer (Genome Viewer) unavailable |
 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
 OLGA (Gene List Generator) unavailable |
 |
Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
|
MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Cellular Component
Molecular Function
Gene-Chemical Interaction Annotations
|
|
|
Gene Ontology AnnotationsBiological Process
|
|
Cellular Component
|
|
Molecular Function
|
|
References - curated| 1. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 2. | RGD automated data pipeline |
| 3. | RGD automated import pipeline for gene-chemical interactions |
References - uncuratedGenomics
Comparative Map Data| Phf14 (Rattus norvegicus - Norway rat) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PHF14 (Homo sapiens - human) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phf14 (Mus musculus - house mouse) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phf14 (Chinchilla lanigera - long-tailed chinchilla) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PHF14 (Pan paniscus - bonobo/pygmy chimpanzee) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PHF14 (Canis lupus familiaris - dog) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phf14 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PHF14 (Sus scrofa - pig) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| PHF14 (Chlorocebus sabaeus - African green monkey) |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Phf14 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Position Markers| D4Rat211 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| D4Got26 |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| RH135354 |
|
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
Predicted Target Of
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
||||||||
Expression
RNA-SEQ ExpressionHigh: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM
| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 3 | 36 | 38 | 22 | 19 | 22 | 6 | 6 | 74 | 35 | 41 | 11 | 6 |
| Low | 7 | 19 | 19 | 19 | 2 | 5 | 2 | ||||||
| Below cutoff |
View RNA-SEQ Expression Data
Sequence
Nucleotide Sequences| RefSeq Transcripts | NM_001110492 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006236104 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236105 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236107 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236108 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236109 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_006236111 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_008762716 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592776 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592777 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AABR07059851 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AABR07059852 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07059853 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07059854 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07059855 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AABR07059856 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01028590 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01028591 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01028592 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01028593 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AY383666 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| BC166456 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473959 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ209867 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| FQ221829 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Reference Sequences
| RefSeq Acc Id: | ENSRNOT00000047029 ⟹ ENSRNOP00000044448 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | ENSRNOT00000065649 ⟹ ENSRNOP00000059404 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | ENSRNOT00000089897 ⟹ ENSRNOP00000074287 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
| RefSeq Acc Id: | NM_001110492 ⟹ NP_001103962 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
|
||||||||||||||||||||
| Sequence: |
TTACTTCCTTCTTGGCAGAGCTGTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGChide sequence |
| RefSeq Acc Id: | XM_006236104 ⟹ XP_006236166 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
| RefSeq Acc Id: | XM_006236105 ⟹ XP_006236167 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
TGCGGTGCGCGCGCTGGGCCTCTCAGAGAGCCCCAGAGGGAGCTGCCAGGCGCCTCTGCAGGCGhide sequence |
| RefSeq Acc Id: | XM_006236107 ⟹ XP_006236169 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
| RefSeq Acc Id: | XM_006236108 ⟹ XP_006236170 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
| RefSeq Acc Id: | XM_006236109 ⟹ XP_006236171 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
| RefSeq Acc Id: | XM_006236111 ⟹ XP_006236173 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
|
||||||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
| RefSeq Acc Id: | XM_008762716 ⟹ XP_008760938 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
| RefSeq Acc Id: | XM_017592776 ⟹ XP_017448265 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
| RefSeq Acc Id: | XM_017592777 ⟹ XP_017448266 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
|
||||||||
| Sequence: |
GTATCCGGGTCGTTCTTCTCCCTATTGTCTCTGACAGTCGGCCCTCGACTGGAAATTCTGGGTChide sequence |
Protein Sequences| Protein RefSeqs | NP_001103962 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006236166 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236167 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236169 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236170 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236171 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_006236173 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_008760938 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448265 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017448266 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | AAI66456 | (Get FASTA) | NCBI Sequence Viewer |
| AAQ96224 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM15078 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM15079 | (Get FASTA) | NCBI Sequence Viewer |
Reference Sequences
| RefSeq Acc Id: | NP_001103962 ⟸ NM_001110492 |
| - UniProtKB: | G3V9T6 (UniProtKB/TrEMBL) |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_006236167 ⟸ XM_006236105 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_006236170 ⟸ XM_006236108 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_006236166 ⟸ XM_006236104 |
| - Peptide Label: | isoform X1 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_006236171 ⟸ XM_006236109 |
| - Peptide Label: | isoform X7 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_006236169 ⟸ XM_006236107 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_006236173 ⟸ XM_006236111 |
| - Peptide Label: | isoform X8 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_008760938 ⟸ XM_008762716 |
| - Peptide Label: | isoform X6 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_017448265 ⟸ XM_017592776 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | XP_017448266 ⟸ XM_017592777 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MDRSSKRRQVKPLAASLLEALDYDSSDDSDFKVGDASDSEGSGNGSEDPSKDSGEGSCSDSEENhide sequence |
| RefSeq Acc Id: | ENSRNOP00000059404 ⟸ ENSRNOT00000065649 |
| RefSeq Acc Id: | ENSRNOP00000074287 ⟸ ENSRNOT00000089897 |
| RefSeq Acc Id: | ENSRNOP00000044448 ⟸ ENSRNOT00000047029 |
Protein Domains
PHD-type
TranscriptomePromoters| RGD ID: | 13692879 | ||||||||
| Promoter ID: | EPDNEW_R3404 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Phf14_1 | ||||||||
| Description: | PHD finger protein 14 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Alternative Promoters: | null; see alsoEPDNEW_R3405 | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
|
| RGD ID: | 13692882 | ||||||||
| Promoter ID: | EPDNEW_R3405 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Phf14_2 | ||||||||
| Description: | PHD finger protein 14 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Alternative Promoters: | null; see alsoEPDNEW_R3404 | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
|
Strain Variation
Strain Sequence Variants (Rnor 6.0)
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
|
||||||||||||||||||||
Additional Information
External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:1563764 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000005775 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000044448 | UniProtKB/TrEMBL |
| ENSRNOP00000059404 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSRNOP00000074287 | ENTREZGENE, UniProtKB/TrEMBL | |
| Ensembl Transcript | ENSRNOT00000047029 | UniProtKB/TrEMBL |
| ENSRNOT00000065649 | ENTREZGENE, UniProtKB/TrEMBL | |
| ENSRNOT00000089897 | ENTREZGENE, UniProtKB/TrEMBL | |
| Gene3D-CATH | 3.30.40.10 | UniProtKB/TrEMBL |
| IMAGE_CLONE | IMAGE:9025134 | IMAGE-MGC_LOAD |
| InterPro | EPHD | UniProtKB/TrEMBL |
| Zinc_finger_PHD-type_CS | UniProtKB/TrEMBL | |
| Znf_FYVE_PHD | UniProtKB/TrEMBL | |
| Znf_PHD | UniProtKB/TrEMBL | |
| Znf_PHD-finger | UniProtKB/TrEMBL | |
| Znf_RING/FYVE/PHD | UniProtKB/TrEMBL | |
| KEGG Report | rno:500030 | UniProtKB/TrEMBL |
| MGC_CLONE | MGC:187735 | IMAGE-MGC_LOAD |
| NCBI Gene | 500030 | ENTREZGENE |
| Pfam | PHD | UniProtKB/TrEMBL |
| PhenoGen | Phf14 | PhenoGen |
| PROSITE | EPHD | UniProtKB/TrEMBL |
| ZF_PHD_1 | UniProtKB/TrEMBL | |
| ZF_PHD_2 | UniProtKB/TrEMBL | |
| SMART | PHD | UniProtKB/TrEMBL |
| Superfamily-SCOP | FYVE_PHD_ZnF | UniProtKB/TrEMBL |
| UniGene | Rn.117647 | ENTREZGENE |
| UniProt | A0A0G2K7P2_RAT | UniProtKB/TrEMBL |
| B2GUY7_RAT | UniProtKB/TrEMBL | |
| G3V9T6 | ENTREZGENE, UniProtKB/TrEMBL | |
| Q6TXI8_RAT | UniProtKB/TrEMBL |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2008-03-06 | Phf14 | PHD finger protein 14 | RGD1563764_predicted | similar to PHD finger protein 14 isoform 1 (predicted) | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
| 2006-03-07 | RGD1563764_predicted | similar to PHD finger protein 14 isoform 1 (predicted) | LOC500030 | similar to PHD finger protein 14 isoform 1 | Symbol and Name status set to approved | 1299863 | APPROVED |
| 2006-02-09 | LOC500030 | similar to PHD finger protein 14 isoform 1 | Symbol and Name status set to provisional | 70820 | PROVISIONAL |
 |
| More on Phf14 | |
|
Alliance Gene |
|
NCBI Gene |
|
Ensembl Gene |
|
|
JBrowse: rn5 rn6 |
|
NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 1563764 |
| Created: | 2006-02-09 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
