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Gene: Vps50 (VPS50 subunit of EARP/GARPII complex) Rattus norvegicus
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Symbol: Vps50
Name: VPS50 subunit of EARP/GARPII complex
Description: Predicted to have SNARE binding activity. Predicted to be involved in endocytic recycling. Localizes to the perinuclear region of cytoplasm and recycling endosome. Orthologous to human VPS50 (VPS50 subunit of EARP/GARPII complex); INTERACTS WITH (S)-10-[(DIMETHYLAMINO)METHYL]-4-ETHYL-4,9-DIHYDROXY-1H-PYRANO[3',4':6,7]INOLIZINO[1,2-B]-QUINOLINE-3,14(4H,12H)-DIONE; 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: Ccdc132; coiled-coil domain containing 132; coiled-coil domain-containing protein 132; EARP/GARPII complex subunit VPS50; LOC312083; RGD1304751; similar to RIKEN cDNA 1700034M03 gene; syndetin; VPS50 EARP/GARPII complex subunit
Orthologs:
Homo sapiens (human) : VPS50 (VPS50 subunit of EARP/GARPII complex)  HGNC  Alliance
Mus musculus (house mouse) : Vps50 (VPS50 EARP/GARPII complex subunit)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Vps50 (VPS50 subunit of EARP/GARPII complex)
Pan paniscus (bonobo/pygmy chimpanzee) : VPS50 (VPS50 subunit of EARP/GARPII complex)
Canis lupus familiaris (dog) : VPS50 (VPS50 subunit of EARP/GARPII complex)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Vps50 (VPS50 subunit of EARP/GARPII complex)
Sus scrofa (pig) : VPS50 (VPS50 subunit of EARP/GARPII complex)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0428,441,255 - 28,551,784 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0428,344,487 - 28,455,450 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,304,788 - 28,410,697 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1428,318,488 - 28,424,228 (+)NCBI
Celera426,870,657 - 26,971,611 (+)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome
Promoters

Strain Variation

Strain Sequence Variants (Rnor 5.0)

Additional Information

External Database Links
Nomenclature History
 
More on Vps50
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1304751
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2019-08-20
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.