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Analyze GeneStrainQTL List |
 Gene Annotator (Functional Annotation) unavailable |
 Gene Annotator (Annotation Distribution) unavailable |
 Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable |
Gene Annotator (Functional Annotation) |
Gene Annotator (Annotation Distribution) |
Variant Visualizer (Genomic Variants) |
 InterViewer (Protein-Protein Interactions) unavailable |
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 Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable |
InterViewer (Protein-Protein Interactions) |
GViewer (Genome Viewer) |
Variant Visualizer (Damaging Variants) |
 Gene Annotator (Annotation Comparison) unavailable |
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Gene Annotator (Annotation Comparison) |
OLGA (Gene List Generator) |
Excel (Download) |
 MOET (Multi-Ontology Enrichement) unavailable |
 GOLF (Gene-Ortholog Location Finder) unavailable |
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MOET (Multi-Ontology Enrichement) |
GOLF (Gene-Ortholog Location Finder) |
Imported Annotations - CTD | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| peripheral nervous system disease | ISO | RGD:734329 | 11554173 | CTD Direct Evidence: marker/mechanism | CTD | PMID:21228734 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene-Chemical Interaction AnnotationsGene Ontology AnnotationsMolecular Pathway AnnotationsDisease AnnotationsGene-Chemical Interaction Annotations
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Gene Ontology Annotations
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Molecular Pathway AnnotationsReferences - curated| 1. | Allan VJ, Biochem Soc Trans. 2011 Oct;39(5):1169-78. doi: 10.1042/BST0391169. |
| 2. | Fejtova A, etal., J Cell Biol. 2009 Apr 20;185(2):341-55. doi: 10.1083/jcb.200807155. |
| 3. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
| 4. | GOA data from the GO Consortium |
| 5. | Ligon LA, etal., J Biol Chem. 2004 Apr 30;279(18):19201-8. Epub 2004 Feb 24. |
| 6. | MGD data from the GO Consortium |
| 7. | Paschal BM, etal., J Cell Biol 1992 Sep;118(5):1133-43. |
| 8. | Pfister KK, etal., Mol Biol Cell. 1996 Feb;7(2):331-43. |
| 9. | Pipeline to import KEGG annotations from KEGG into RGD |
| 10. | RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations |
| 11. | RGD automated import pipeline for gene-chemical interactions |
| 12. | Tentative Sequence Data IDs. TIGR Gene Index, Rat Data |
References - uncurated| PubMed | 11148215 15121898 15748847 16051887 16449194 19229290 20682791 21911489 22871113 23577064 23704327 24561039 25540360 |
Comparative Map Data| Dync1i1 (Rattus norvegicus - Norway rat) |
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| DYNC1I1 (Homo sapiens - human) |
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| Dync1i1 (Mus musculus - house mouse) |
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| Dync1i1 (Chinchilla lanigera - long-tailed chinchilla) |
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| DYNC1I1 (Pan paniscus - bonobo/pygmy chimpanzee) |
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| DYNC1I1 (Canis lupus familiaris - dog) |
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| Dync1i1 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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| DYNC1I1 (Sus scrofa - pig) |
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| DYNC1I1 (Chlorocebus sabaeus - African green monkey) |
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| Dync1i1 (Heterocephalus glaber - naked mole-rat) |
No map positions available. | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
QTLs in Region (Rnor_6.0)| The following QTLs overlap with this region. |  | Full Report | | CSV | | TAB | | Printer | | Gviewer |
miRNA Target Status
| The detailed report is available here: | | Full Report | | CSV | | TAB | | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
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RNA-SEQ Expression| alimentary part of gastrointestinal system | circulatory system | endocrine system | exocrine system | hemolymphoid system | hepatobiliary system | integumental system | musculoskeletal system | nervous system | renal system | reproductive system | respiratory system | appendage | |
| High | |||||||||||||
| Medium | 8 | 58 | 1 | ||||||||||
| Low | 2 | 6 | 19 | 12 | 9 | 12 | 7 | 8 | 14 | 16 | 40 | 2 | 7 |
| Below cutoff | 1 | 32 | 24 | 23 | 8 | 23 | 1 | 3 | 2 | 12 | 7 | 1 |
Nucleotide Sequences| RefSeq Transcripts | NM_019234 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| XM_006236026 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592507 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592508 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592509 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| XM_017592510 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| GenBank Nucleotide | AAHX01028357 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| AAHX01028358 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01028359 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AAHX01028360 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC091353 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC095999 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| AC099174 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| CH473959 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| KU343212 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| KU343213 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| KU343214 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| KU343215 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
| X66845 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
| RefSeq Acc Id: | ENSRNOT00000013184 ⟹ ENSRNOP00000013184 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| RefSeq Acc Id: | NM_019234 ⟹ NP_062107 | ||||||||||||||||||||
| RefSeq Status: | PROVISIONAL | ||||||||||||||||||||
| Type: | CODING | ||||||||||||||||||||
| Position: |
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| Sequence: |
CCAAGCTCAGGAGAGAGGAAGTGATCGCTCCGGGAGGAGCTAGCCTAGCCGCGCAGTGAGACAGhide sequence |
| RefSeq Acc Id: | XM_006236026 ⟹ XP_006236088 | ||||||||||||
| RefSeq Status: | |||||||||||||
| Type: | CODING | ||||||||||||
| Position: |
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| Sequence: |
GGCTGGCCCCGAGGCGGTGCTGCGCTGTGCGGAGGCCCTCCCGCGGGAGGCGCGGGCGTGGAGGhide sequence |
| RefSeq Acc Id: | XM_017592507 ⟹ XP_017447996 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GCCAGGCTGGCCCCGAGGCGGTGCTGCGCTGTGCGGAGGCCCTCCCGCGGGAGGCGCGGGCGTGhide sequence |
| RefSeq Acc Id: | XM_017592508 ⟹ XP_017447997 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CCAGGCTGGCCCCGAGGCGGTGCTGCGCTGTGCGGAGGCCCTCCCGCGGGAGGCGCGGGCGTGGhide sequence |
| RefSeq Acc Id: | XM_017592509 ⟹ XP_017447998 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
GGCTGGCCCCGAGGCGGTGCTGCGCTGTGCGGAGGCCCTCCCGCGGGAGGCGCGGGCGTGGAGGhide sequence |
| RefSeq Acc Id: | XM_017592510 ⟹ XP_017447999 | ||||||||
| RefSeq Status: | |||||||||
| Type: | CODING | ||||||||
| Position: |
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| Sequence: |
CAGGCTGGCCCCGAGGCGGTGCTGCGCTGTGCGGAGGCCCTCCCGCGGGAGGCGCGGGCGTGGAhide sequence |
Protein Sequences| Protein RefSeqs | NP_062107 | (Get FASTA) | NCBI Sequence Viewer |
| XP_006236088 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447996 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447997 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447998 | (Get FASTA) | NCBI Sequence Viewer | |
| XP_017447999 | (Get FASTA) | NCBI Sequence Viewer | |
| GenBank Protein | ANG60407 | (Get FASTA) | NCBI Sequence Viewer |
| ANG60408 | (Get FASTA) | NCBI Sequence Viewer | |
| ANG60409 | (Get FASTA) | NCBI Sequence Viewer | |
| ANG60410 | (Get FASTA) | NCBI Sequence Viewer | |
| CAA47321 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM15026 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM15027 | (Get FASTA) | NCBI Sequence Viewer | |
| EDM15028 | (Get FASTA) | NCBI Sequence Viewer | |
| Q63100 | (Get FASTA) | NCBI Sequence Viewer |
| RefSeq Acc Id: | NP_062107 ⟸ NM_019234 |
| - UniProtKB: | Q63100 (UniProtKB/Swiss-Prot) |
| - Sequence: |
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSDLDRKRRETEALLQhide sequence |
| RefSeq Acc Id: | XP_006236088 ⟸ XM_006236026 |
| - Peptide Label: | isoform X1 |
| - UniProtKB: | A0A173DW29 (UniProtKB/TrEMBL) |
| - Sequence: |
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSDLDRKRRETEALLQhide sequence |
| RefSeq Acc Id: | XP_017447996 ⟸ XM_017592507 |
| - Peptide Label: | isoform X2 |
| - Sequence: |
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSDLDRKRRETEALLQhide sequence |
| RefSeq Acc Id: | XP_017447997 ⟸ XM_017592508 |
| - Peptide Label: | isoform X3 |
| - Sequence: |
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSDLDRKRRETEALLQhide sequence |
| RefSeq Acc Id: | XP_017447999 ⟸ XM_017592510 |
| - Peptide Label: | isoform X5 |
| - Sequence: |
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSDLDRKRRETEALLQhide sequence |
| RefSeq Acc Id: | XP_017447998 ⟸ XM_017592509 |
| - Peptide Label: | isoform X4 |
| - Sequence: |
MSDKSDLKAELERKKQRLAQIREEKKRKEEERKKKEADMQQKKEPVPDDSDLDRKRRETEALLQhide sequence |
| RefSeq Acc Id: | ENSRNOP00000013184 ⟸ ENSRNOT00000013184 |
TranscriptomePromoters| RGD ID: | 13692862 | ||||||||
| Promoter ID: | EPDNEW_R3386 | ||||||||
| Type: | initiation region | ||||||||
| Name: | Dync1i1_1 | ||||||||
| Description: | dynein cytoplasmic 1 intermediate chain 1 | ||||||||
| SO ACC ID: | SO:0000170 | ||||||||
| Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
| Experiment Methods: | Single-end sequencing. | ||||||||
| Position: |
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Strain Sequence Variants (Rnor 6.0)
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External Database Links| Database | Acc Id | Source(s) |
| AGR Gene | RGD:2512 | AgrOrtholog |
| Ensembl Genes | ENSRNOG00000009700 | Ensembl, ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Protein | ENSRNOP00000013184 | ENTREZGENE, UniProtKB/TrEMBL |
| Ensembl Transcript | ENSRNOT00000013184 | ENTREZGENE, UniProtKB/TrEMBL |
| Gene3D-CATH | 2.130.10.10 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| InterPro | DYNC1I1/DYNC1I2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| WD40/YVTN_repeat-like_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| WD40_repeat | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| WD40_repeat_dom | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| WD40_repeat_dom_sf | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| KEGG Report | rno:29564 | UniProtKB/Swiss-Prot |
| NCBI Gene | 29564 | ENTREZGENE |
| Pfam | Dynein_IC2 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| WD40 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL | |
| PhenoGen | Dync1i1 | PhenoGen |
| PROSITE | WD_REPEATS_REGION | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| SMART | WD40 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| Superfamily-SCOP | SSF50978 | UniProtKB/Swiss-Prot, UniProtKB/TrEMBL |
| TIGR | TC206306 | |
| UniGene | Rn.11273 | ENTREZGENE |
| UniProt | A0A173DW29 | ENTREZGENE, UniProtKB/TrEMBL |
| DC1I1_RAT | UniProtKB/Swiss-Prot | |
| G3V792_RAT | UniProtKB/TrEMBL | |
| Q63100 | ENTREZGENE |
Nomenclature History| Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
|---|---|---|---|---|---|---|---|
| 2006-03-30 | Dync1i1 | dynein cytoplasmic 1 intermediate chain 1 | Dncic1 | dynein, cytoplasmic, intermediate chain 1 | Symbol and Name updated | 1299863 | APPROVED |
| 2002-11-06 | Dncic1 | dynein, cytoplasmic, intermediate chain 1 | Dnci1 | Symbol and Name updated | 625702 | APPROVED | |
| 2002-06-10 | Dnci1 | dynein, cytoplasmic, intermediate chain 1 | Name updated | 70584 | APPROVED | ||
| 2001-12-06 | Dnci 1 | dynein, cytoplasmic, intermediate chain 1 | Symbol updated to reflect Human and Mouse nomenclature | 69665 | APPROVED |
RGD Curation Notes| Note Type | Note | Reference |
|---|---|---|
| gene_physical_interaction | binds alpha tubulin | 69826 |
| gene_process | may mediate the interaction of cytoplasmic dynein with membranous organelles and kinetochores | 69826 |
| gene_process | may be involved in subcellular targeting | 69826 |
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| More on Dync1i1 | |
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Alliance Gene |
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NCBI Gene |
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Ensembl Gene |
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JBrowse: rn5 rn6 |
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NCBI Genome Data Viewer |
| RGD Object Information | |
| RGD ID: | 2512 |
| Created: | 2000-05-25 |
| Species: | Rattus norvegicus |
| Last Modified: | 2020-08-20 |
| Status: | ACTIVE |
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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.
