Scl23 QTL Report (Rattus norvegicus) - Rat Genome Database

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QTL Registration

QTL: Scl23 (Serum cholesterol level QTL 23) Rattus norvegicus

Symbol: Scl23
Name: Serum cholesterol level QTL 23
RGD ID: 61408
Previously known as: Lil2; Lipid Level QTL 2; Spl1; Serum phospholipid level QTL 1
Trait: blood HDL phospholipid amount   (VT:0010504)    
Measurement Type: serum high density lipoprotein phospholipid level   (CMO:0001567)    
LOD Score: Not Available
P Value: 5.0E-4
Variance: Not Available
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.241 - 27,716,890RGD_MAPPER_PIPELINEmRatBN7.2
Rnor_6.041 - 25,545,519RGD_MAPPER_PIPELINERnor6.0
Rnor_5.041 - 25,597,824RGD_MAPPER_PIPELINERnor5.0
RGSC_v3.441 - 22,959,087RGD_MAPPER_PIPELINERGSC3.4
RGSC_v3.140 - 22,959,087RGD
Cross Type: F2
Strains Crossed: SHR/Ola BN-Lx 
JBrowse: View Region in Genome Browser (JBrowse)
Model



Disease Annotations     Click to see Annotation Detail View

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
Experimental Data Annotations     Click to see Annotation Detail View

Experimental Condition

Measurement Method

Vertebrate Trait

Rat Strain
BN-Lx  (IEA)
SHR/Ola  (IEA)

References

References - curated
# Reference Title Reference Citation
1. Quantitative trait loci influencing cholesterol and phospholipid phenotypes map to chromosomes that contain genes regulating blood pressure in the spontaneously hypertensive rat. Bottger A, etal., J Clin Invest 1996 Aug 1;98(3):856-62

Region

Genes in Region
The following Genes overlap with this region.    Full Report CSV TAB Printer Analysis Tools
RGD IDSymbolNameChrStartStopSpecies
40953092Nid2-ps12nidogen 2, pseudogene 1243591455279Rat
9345060Ervkl-ps1endogenous retrovirus group K like, pseudogene 14115173117996Rat
41235420Ube2v1-ps12ubiquitin conjugating enzyme E2 V1, pseudogene 124194145195559Rat
41246724LOC120102192uncharacterized LOC1201021924362232376265Rat
41140831LOC120102190uncharacterized LOC1201021904479781509877Rat
41231670Ube2v1-ps18ubiquitin conjugating enzyme E2 V1, pseudogene 184482975484423Rat
41088472LOC1201025915.8S ribosomal RNA4494813494965Rat
41248797LOC1201027615.8S ribosomal RNA4598721598874Rat
7658986LOC102555256uncharacterized LOC1025552564605174660975Rat
41158717Uba52-ps14ubiquitin A-52 residue ribosomal protein fusion product 1, pseudogene 144654676655228Rat
40930419LOC1201025695.8S ribosomal RNA4749258749410Rat
41187448LOC1201026135.8S ribosomal RNA415464021546554Rat
41380460Vmn2r116l-ps20vomeronasal 2, receptor 116 like, pseudogene 20415473251636961Rat
41298104LOC1201026245.8S ribosomal RNA417891021789254Rat
41301541LOC1201026465.8S ribosomal RNA419298841930037Rat
9271714LOC103691583ATP synthase-coupling factor 6, mitochondrial pseudogene424971292500406Rat
40990800LOC1201026355.8S ribosomal RNA428779442878097Rat
41180048Ube2v1-ps14ubiquitin conjugating enzyme E2 V1, pseudogene 14429330092934492Rat
41229821LOC1201025805.8S ribosomal RNA429536932953845Rat
41198355Atp5pf-ps2ATP synthase peripheral stalk subunit F6, pseudogene 2433402343411812Rat
41322533LOC12010245360S ribosomal protein L17-like434293423429926Rat
9291847LOC103691954zinc finger protein 431-like437828863785748Rat
1590940Ube2v1-ps23ubiquitin conjugating enzyme E2 V1, pseudogene 23438085403809296Rat
40953497Rpl17-ps4ribosomal protein L17, pseudogene 4438732683873880Rat
41198911LOC1201027725.8S ribosomal RNA439165803916732Rat
41116805LOC1201025585.8S ribosomal RNA440134504013602Rat
7734302Ralbp1l3ralA binding protein 1 like 3445557004626990Rat
11385037Nid2l3nidogen 2 like 3446586894664208Rat
41164957LOC120102556U4 spliceosomal RNA446631144663273Rat
41389015LOC1201026025.8S ribosomal RNA447386154738766Rat
6500397Haus8-ps2HAUS augmin-like complex, subunit 8, pseudogene 2451360595149904Rat
2318720Tmed10-ps1transmembrane p24 trafficking protein 10, pseudogene 1451598915160624Rat
1563546Dhfr-ps1dihydrofolate reductase, pseudogene 1451690695173434Rat
2901Il6interleukin 6452146025219178Rat
11379972LOC10835085060S ribosomal protein L34 pseudogene453431965343591Rat
40930566LOC120102202uncharacterized LOC120102202454179535443360Rat
11457732LOC10835080360S ribosomal protein L7 pseudogene454435015452484Rat
1308207Dnajb6DnaJ heat shock protein family (Hsp40) member B6454526835556679Rat
1559986Ube3cubiquitin protein ligase E3C456489325749922Rat
1583498Polr2sl1RNA polymerase II, I and III subunit like 1457430675743270Rat
1588091Mnx1motor neuron and pancreas homeobox 1458665065871465Rat
1588109Nom1nucleolar protein with MIF4G domain 1458912205910741Rat
1588121Rsl24d1-ps1ribosomal L24 domain containing 1, pseudogene 1459362075936690Rat
1563910Lmbr1limb development membrane protein 1459746876146348Rat
1308287Rnf32ring finger protein 32461447496209320Rat
1596704Nsa2l2NSA2 ribosome biogenesis factor like 2463461226346808Rat
7571041LOC102550082uncharacterized LOC102550082464438396529474Rat
40945507LOC120102203uncharacterized LOC120102203468852886889077Rat
7585075LOC102546975uncharacterized LOC102546975469457526957648Rat
3673Shhsonic hedgehog signaling molecule469540176963170Rat
1310651Rbm33RNA binding motif protein 33469808077088334Rat
1583296Cnpy1canopy FGF signaling regulator 1471823117191408Rat
1561842En2engrailed homeobox 2472210967226943Rat
708457Insig1insulin induced gene 1473154947323972Rat
7528367LOC102546740uncharacterized LOC102546740473438867366843Rat
9428705LOC103692012uncharacterized LOC103692012474012697414270Rat
2851Htr5a5-hydroxytryptamine receptor 5A474449687454651Rat
41084820LOC120102658small nucleolar RNA SNORA48474975577497679Rat
1307547Paxip1PAX interacting protein 1475251327576659Rat
41057209Trnav-aac11transfer RNA valine (anticodon AAC) 11475722247572296Rat
68402Dpp6dipeptidyl peptidase like 6475893868508666Rat
41361083Gapdh-ps89Glyceraldehyde-3-phosphate dehydrogenase, pseudogene 89476189377621235Rat
41104292LOC120102469uncharacterized LOC120102469476565417658707Rat
11471061LOC10835082860S ribosomal protein L10a pseudogene478453707857436Rat
41258656Nme2-ps4NME/NM23 nucleoside diphosphate kinase 2, pseudogene 4484972618497711Rat
41188942LOC120102576U6 spliceosomal RNA486173358617438Rat
41145582Cdk4-ps4cyclin-dependent kinase 4, pseudogene 4487039278732472Rat
41324069LOC120102206uncharacterized LOC120102206490687469071677Rat
7659798LOC102548175uncharacterized LOC102548175492055729215261Rat
1565759Actr3bactin related protein 3B492616319355496Rat
1564823Xrcc2X-ray repair cross complementing 2494238739502980Rat
41264669LOC120102207uncharacterized LOC120102207494664469476462Rat
11382704LOC108350851protein transport protein Sec61 subunit gamma pseudogene495574929557698Rat
2322811Rpl10a-ps9ribosomal protein L10A, pseudogene 9495895019590219Rat
1561536Cct8l2chaperonin containing TCP1 subunit 8 like 2496050359606971Rat
1587205Kmt2clysine methyltransferase 2C496206389834787Rat
41231425Map1lc3b-ps2microtubule-associated protein 1 light chain 3 beta, pseudogene 2497159929716689Rat
735097Galnt11polypeptide N-acetylgalactosaminyltransferase 11498376299871141Rat
11418580Rpl30-ps8ribosomal protein L30, pseudogene 8498565579856977Rat
1565271Galntl5polypeptide N-acetylgalactosaminyltransferase-like 5498734269923297Rat
41090173LOC120102456calcineurin B homologous protein 1-like499473129949851Rat
2323464LOC100359776hypothetical LOC100359776499839009993989Rat
727782Prkag2protein kinase AMP-activated non-catalytic subunit gamma 241001089010252155Rat
7526315LOC102554253uncharacterized LOC10255425341012088310125470Rat
7680602LOC102554193uncharacterized LOC10255419341016303510164178Rat
41315240LOC120102471uncharacterized LOC12010247141024574610251046Rat
621840RhebRas homolog, mTORC1 binding41027897010320160Rat
41241150LOC120102594U6 spliceosomal RNA41035377810353879Rat
1308547Crygncrystallin, gamma N41039401510401542Rat
41355964LOC120102472uncharacterized LOC12010247241042349610437437Rat
1566180Wdr86WD repeat domain 8641042349610443473Rat
1359489Nub1negative regulator of ubiquitin-like proteins 141044291710473689Rat
1561560Gpd1l3glycerol-3-phosphate dehydrogenase 1 like 341052377710527072Rat
1311869Smarcd3SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 341054869310580334Rat
1306404Chpf2chondroitin polymerizing factor 241057847010585940Rat
2325494Mir671microRNA 67141058074710580827Rat
1304942Abcf2ATP binding cassette subfamily F member 241059480210607620Rat
1564789Iqca1lIQ motif containing with AAA domain 1 like41061667710628300Rat
1562922Asb10ankyrin repeat and SOCS box-containing 1041063031810644270Rat
621864Gbx1gastrulation brain homeobox 141064595710672486Rat
1310751Agap3ArfGAP with GTPase domain, ankyrin repeat and PH domain 341067474610724848Rat
735120Tmub1transmembrane and ubiquitin-like domain containing 141072949410732060Rat
1311601FastkFas-activated serine/threonine kinase41073227310736332Rat
3711Slc4a2solute carrier family 4 member 241073641910754407Rat
70514Cdk5cyclin-dependent kinase 541075468210760110Rat
708578Asic3acid sensing ion channel subunit 341076050910764987Rat
1307655Abcb8ATP binding cassette subfamily B member 841076620610783598Rat
1560887Atg9bautophagy related 9B41078493410793832Rat
40958365LOC120102208uncharacterized LOC12010220841078763010789628Rat
3186Nos3nitric oxide synthase 341079383410814170Rat
621414Kcnh2potassium voltage-gated channel subfamily H member 241082683410859009Rat
11470826LOC108350647uncharacterized LOC10835064741091070610925138Rat
1560934Nup42nucleoporin 4241098555411002591Rat
1305564Klhl7kelch-like family member 741100636611055399Rat
1562906Hycc1hyccin PI4KA lipid kinase complex subunit 141113222411239120Rat
41185982Ube2i-ps6ubiquitin-conjugating enzyme E2I, pseudogene 641116255311163825Rat
40988581LOC120102210uncharacterized LOC12010221041117714311207140Rat
7653780LOC102555004uncharacterized LOC10255500441126005011268070Rat
6502346LOC100909675uncharacterized LOC10090967541128760511291820Rat
41215821Snord93small nucleolar RNA, C/D box 9341129011611290186Rat
1591393Tomm7translocase of outer mitochondrial membrane 741130512211311963Rat
1560433Rint1RAD50 interactor 141131941611355740Rat
1307054Pus7pseudouridine synthase 741136016911401139Rat
41232405LOC120102743small nucleolar RNA SNORD9341143996711440037Rat
1305107Srpk2SRSF protein kinase 241146468411655993Rat
1309641Kmt2elysine methyltransferase 2E41165821811727373Rat
41106171LOC120102473uncharacterized LOC12010247341176510411771452Rat
40993653LOC120102618U7 small nuclear RNA41178827611788340Rat
9159670LOC103692025uncharacterized LOC10369202541183620012379126Rat
9400372Mifl1macrophage migration inhibitory factor like 141196694511973092Rat
41244972Rnu2-12RNA, U2 small nuclear 1241237540312375483Rat
40977562LOC120102619U7 small nuclear RNA41244095712441013Rat
41392212LOC120102614U7 small nuclear RNA41247725012477311Rat
1561088Orc5origin recognition complex, subunit 541254800712612611Rat
41354020LOC120102148uncharacterized LOC12010214841264090312643798Rat
41018004LOC120102692small nucleolar RNA SNORA1741272068412720803Rat
3553Relnreelin41273617713162956Rat
9334471Elobl5elongin B like 541311186113117780Rat
7532340Cryzl1-ps1crystallin zeta like 1, pseudogene 141319823613199448Rat
69334Slc26a5solute carrier family 26 member 541321026013249289Rat
3428Psmc2proteasome 26S subunit, ATPase 241325585013270160Rat
620524Dnajc2DnaJ heat shock protein family (Hsp40) member C241327023913297438Rat
41053492LOC120102645small nucleolar RNA SNORA4841328075513280901Rat
621297Pmpcbpeptidase, mitochondrial processing subunit beta41329758313310363Rat
1587329Arf1-ps3ADP-ribosylation factor 1, pseudogene 341332548013328608Rat
735197NapepldN-acyl phosphatidylethanolamine phospholipase D41336053213398815Rat
1305915Armc10armadillo repeat containing 1041339900413414594Rat
1642425Fbxl13F-box and leucine-rich repeat protein 1341341488013607079Rat
41107235LOC120102659small nucleolar RNA SNORA1741349698613497113Rat
1560165Lrrc17leucine rich repeat containing 1741350142813531845Rat
1562135Fam185afamily with sequence similarity 185, member A41354202213662967Rat
41018904LOC120102739small nucleolar RNA SNORD8641355582413555909Rat
1559535Ccdc146coiled-coil domain containing 14641366276613811619Rat
620170Fgl2fibrinogen-like 241371056613716207Rat
41335650LOC120102212uncharacterized LOC12010221241375544713761134Rat
1563271Gsapgamma-secretase activating protein41381304613907875Rat
41237841Net1-ps1neuroepithelial cell transforming 1, pseudogene 141395581813973331Rat
41193151LOC120102737small nucleolar RNA SNORA4041398103313981157Rat
7666239LOC102556034uncharacterized LOC10255603441401221314020864Rat
620894Ptpn12protein tyrosine phosphatase, non-receptor type 1241402099714092931Rat
41353109LOC120102213uncharacterized LOC12010221341410059914110132Rat
1308748Rsbn1lround spermatid basic protein 1-like41413807614203972Rat
9685233AptrAlu-mediated CDKN1A/p21 transcriptional regulator41413827514139577Rat
1308939Tmem60transmembrane protein 6041421002914214884Rat
1310593Phtf2putative homeodomain transcription factor 241421519014330549Rat
621855Magi2membrane associated guanylate kinase, WW and PDZ domain containing 241438638915870036Rat
41061536LOC120102478uncharacterized LOC12010247841439387614398745Rat
40992258LOC120102477uncharacterized LOC12010247741458890314591674Rat
41096115Rpl28-ps10ribosomal protein L28, pseudogene 1041481578414816098Rat
41012632LOC120102678small nucleolar RNA SNORA1741494878714948916Rat
11420335Tmsb10l4thymosin beta 10 like 441529919815299866Rat
9417558Lmnb2-ps1lamin B2, pseudogene 141545728615601866Rat
41303880Rnu6-543RNA, U6 small nuclear 54341558013915580245Rat
41216683Trnap-agg63transfer RNA proline (anticodon AGG) 6341570415715704231Rat
41065937LOC120102475uncharacterized LOC12010247541580920515825962Rat
41161253LOC120102476uncharacterized LOC12010247641584694315848437Rat
76813254921504A21RiklRIKEN cDNA 4921504A21 gene like41587049715898907Rat
2318988Bclaf1-ps1BCL2-associated transcription factor 1, pseudogene 141588530715888072Rat
41076500LOC120102698small nucleolar RNA SNORA1741628895316289069Rat
6497775Apex1-ps2apurinic/apyrimidinic endodeoxyribonuclease 1, pseudogene 241644519516446152Rat
2713Gnai1G protein subunit alpha i141681400016898119Rat
727817Gnat3G protein subunit alpha transducin 341716250017212283Rat
41284761Trnaa-agc88transfer RNA alanine (anticodon AGC) 8841719001717190091Rat
2301Cd36CD36 molecule41731734317410084Rat
1565355Cd36l1CD36 molecule like 141742474917465808Rat
41249586Cd36-ps1CD36 molecule, pseudogene 141748783717514900Rat
1309343Sema3csemaphorin 3C41758321217747234Rat
41391017LOC120102215uncharacterized LOC12010221541768857917739337Rat
1563537Rps9-ps5ribosomal protein S9, pseudogene 541782268017823238Rat
7549033LOC102551002uncharacterized LOC10255100241796565718047911Rat
41145508LOC120102685small nucleolar RNA SNORA1741807329818073422Rat
2322730Tfb1m-ps1transcription factor B1, mitochondrial, pseudogene 141819251718200323Rat
7747752Cdhr17cadherin related family member 1741842787718525060Rat
2794Hgfhepatocyte growth factor41867373618745582Rat
9414363LOC103692033uncharacterized LOC10369203341874450218757594Rat
2247Cacna2d1calcium voltage-gated channel auxiliary subunit alpha2delta 141895061119374969Rat
2322535Plrg1-ps1pleiotropic regulator 1, pseudogene 141940646319432154Rat
40929882LOC120102654small nucleolar RNA SNORA4841944411319444260Rat
69406Pclopiccolo (presynaptic cytomatrix protein)41969143920050015Rat
11466909LOC108350655uncharacterized LOC10835065542023314320255059Rat
1310973Sema3esemaphorin 3E42029753420555287Rat
41344080LOC1201025525S ribosomal RNA42051960120519719Rat
7646743LOC102552661uncharacterized LOC10255266142062555220630241Rat
40969825LOC120102459NEDD4-binding protein 1-like42071351420714914Rat
41257705LOC120102460NEDD4-binding protein 1-like42074919220750556Rat
41285801LOC120102461NEDD4-binding protein 1-like42075642420757551Rat
41096301LOC120102462NEDD4-binding protein 1-like42076368920765077Rat
1584092N4bp1l1Nedd4 binding protein 1 like 142080623020807323Rat
40989850LOC120102149NEDD4-binding protein 1-like42081530520815945Rat
41113357LOC120102150NEDD4-binding protein 1-like42082256520823205Rat
1583001Scaf11-ps1SR-related CTD-associated factor 11, pseudogene 142087234120886738Rat
41165648LOC120102463NEDD4-binding protein 1-like42088708520888188Rat
41240105LOC120102151NEDD4-binding protein 1-like42092961620931001Rat
41199734LOC120102216protein SCAF11-like42102395521027327Rat
7550011LOC102552749MLV-related proviral Env polyprotein-like42105194121053799Rat
41115840LOC120102217uncharacterized LOC12010221742115968721181773Rat
3657Sema3asemaphorin 3A42128239821754834Rat
41320971LOC120102218uncharacterized LOC12010221842209288522119273Rat
727939Sema3dsemaphorin 3D42231676922505930Rat
40955874LOC120102571U6 spliceosomal RNA42296828522968392Rat
41054814Envl-ps4MLV-related proviral Env polyprotein-like, pseudogene 442298847722990225Rat
41303418LOC120102627small nucleolar RNA SNORA3142308406723084203Rat
7624497LOC102553320uncharacterized LOC10255332042359296423661292Rat
1562636Ppp1r3bl1protein phosphatase 1, regulatory subunit 3B like 142376587423768883Rat
1564798Tmem183a-ps1transmembrane protein 183A, pseudogene 142389715723898281Rat
6492128Rps6-ps11ribosomal protein S6, pseudogene 1142409335324096338Rat
9197484LOC103692044mitochondrial import inner membrane translocase subunit Tim8 A pseudogene42428942924289895Rat
2744Grm3glutamate metabotropic receptor 342436485424643972Rat
1563349Elapor2endosome-lysosome associated apoptosis and autophagy regulator family member 242461316324805729Rat
2325362Mir879microRNA 87942472445524724530Rat
11462374LOC108350658uncharacterized LOC10835065842477957124794265Rat
7536117LOC102555663uncharacterized LOC10255566342480591224807670Rat
70966Dmtf1cyclin D binding myb-like transcription factor 142490993724950786Rat
1562351Tmem243transmembrane protein 24342495079124968642Rat
41334218LOC120102603U6 spliceosomal RNA42495272424952824Rat
41118809LOC120102219uncharacterized LOC12010221942499381825003812Rat
41212670Eif3k-ps1eukaryotic translation initiation factor 3, subunit K, pseudogene 142501206425012685Rat
70908Crotcarnitine O-octanoyltransferase42506827025133111Rat
620248Abcb4ATP binding cassette subfamily B member 442515099825209489Rat
41286244LOC120102221uncharacterized LOC12010222142517166925175960Rat
41047811C1h11orf98-ps2similar to human chromosome 11 open reading frame 98, pseudogene 242517472725175091Rat
3318Abcb1bATP-binding cassette, sub-family B member 1B42524276125325194Rat
41222673LOC120102222uncharacterized LOC12010222242524540025250299Rat
619951Abcb1aATP binding cassette subfamily B member 1A42535746725529941Rat
1587590Rundc3bRUN domain containing 3B42546254325599477Rat
1308774Slc25a40solute carrier family 25, member 4042563144725676454Rat
1305854Dbf4DBF4-CDC7 kinase regulatory subunit42567657025701152Rat
1585016Adam22ADAM metallopeptidase domain 2242571605525970932Rat
41165065Trnap-agg72transfer RNA proline (anticodon AGG) 7242578050525780585Rat
41303543LOC120102223uncharacterized LOC12010222342582169625835920Rat
1584485Srisorcin42597349325997879Rat
1560331Steap4STEAP4 metalloreductase42607718226099859Rat
41240640LOC120102760U2 spliceosomal RNA42637529726375438Rat
41340251Ranbp1-ps1RAN binding protein 1, pseudogene 142646895426472445Rat
1589640Zfp804bzinc finger protein 804B42660851027144717Rat
41129509Rnu2-34RNA, U2 small nuclear 3442661716926617247Rat
41258698LOC120102775U4 spliceosomal RNA42661813426618285Rat
1564345Tex47testis expressed 4742664409826647393Rat
1589639Cd2ap-ps1CD2-associated protein, pseudogene 142719800627200492Rat
7734714LOC102549955uncharacterized LOC10254995542721068227262917Rat
41114928Ewsr1-ps6EWS RNA-binding protein 642752623327528198Rat

Markers in Region
The following Markers overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolExpected SizeChrStartStopSpeciesMatch
10800D4Wox2798452182945218392Ratregion
10801D4Arb14190452182275218417Ratregion
11107D2Mit20115454018815402004Ratregion
34154D4Mgh2320241024890010249102Ratregion
34200D4Mgh114442133334321333491Ratregion
34343D4Mgh22113490401329040223Ratregion
34601D4Mgh2814441080790210808048Ratregion
11310D4Bro117341075026410750427Ratregion
36127D4Rat917242690728526907447Ratregion
36305D4Rat4182479356107935781Ratregion
37618D4Rat139140477619957762132Ratregion
36448D4Rat617341477063014770800Ratregion
36476D4Rat3160499408859941032Ratregion
36504D4Rat214441002490110025036Ratregion
36632D4Rat244138041107679011076919Ratregion
35895D4Rat117641132007611320244Ratregion
35903D4Rat513841411890414119032Ratregion
39704D4Rat22222442271068522710908Ratregion
39732D4Rat209210488437518843921Ratregion
39882D4Rat14424841049520110495445Ratregion
40502D4Rat147159472128967213051Ratregion
40728D4Rat143124458676625867778Ratregion
38776D4Rat142220494340089434224Ratregion
38918D4Rat13624141304540213045633Ratregion
42144D4Arb13130478729137873066Ratregion
41208D4Rat146118495997079599825Ratregion
41214D4Rat15021641994452419944727Ratregion
42684D4Rat247147483520978352242Ratregion
42685D4Rat220239459490085949253Ratregion
42686D4Rat248246450806675080906Ratregion
42687D4Rat25020341078128510781494Ratregion
42688D4Rat249227476767717677007Ratregion
42689D4Rat25120142284320422843398Ratregion
40958D4Rat14920141930324019303440Ratregion
43765D4Got1123479490857949208Ratregion
43766D4Got10187495339609534147Ratregion
43767D4Got1513941067578910675932Ratregion
43770D4Got8117495699399570056Ratregion
43771D4Got9178493419389342116Ratregion
43773D4Got1426341120879511209058Ratregion
43774D4Got1314941135903311359180Ratregion
43776D4Got1110741044770010447806Ratregion
43778D4Got1619441392419213924386Ratregion
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60434D4Got2135478102447810377Ratregion
60437D4Got3173469708766971049Ratregion
60442D4Got5127482530418253170Ratregion
625771D4Got1217041107678611076956Ratregion
625813D4Got6141494853599485497Ratregion
67353D4Arb1830242280936322809665Ratregion
67354D4Arb1910641229265912292765Ratregion
1358007D16Chm7815842636671126366820Ratregion
1630056D4Got26225641885413218854388Ratregion
1630284D4Ulb113841939005719390195Ratregion
1630504D4Wox5319842535758425357782Ratregion
1631954D4Got28928142420136824201649Ratregion
1628200D7Got2472014212601212804Ratregion
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1629143D4Wox3215542250627722506432Ratregion
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1629577D4Cebr3215465296926529907Ratregion
1629639D4Got20117642483400924834180Ratregion
1629715D4Uia1193471117627111855Ratregion
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1639633D4Got20316642030764320307809Ratregion
1641042D4Got200169482035328203701Ratregion
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1635034D4Got25418241169856511698740Ratregion
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1633717D4Got25516142437029024370451Ratregion
1634118D4Got28711442502054025020656Ratregion
7241171D4Kini1419442535331625353510Ratregion
7241173D4Kini1523842515516325155403Ratregion
7241175D4Kini1621242689607826896290Ratregion
7193044EN2116472229857223101Ratregion
7192157En2151472211367221287Ratregion
7206264Adam2233342589711225897445Ratregion
5036251D9Mgc42e81499083079908388Ratregion
5036434Nos327441079424310794517Ratregion
5036655AU04873128841065713010657418Ratregion
5036837AU04936615541961132819611483Ratregion
5037145RH6903121442129089821291112Ratregion
5035548EN2147472229317223078Ratregion
5035623WI-1802712542460944824609573Ratregion
5026014RH13057818241165570711655889Ratregion
5026026RH13062520041000776610007966Ratregion
7206108UniSTS:532119182452148995215081Ratregion
7206112UniSTS:532129226452163765217472Ratregion
5031384PMC155039P119541081109310811288Ratregion
5028809RH14241015941325588013256039Ratregion
5034267RH14199420441548301915483223Ratregion
5034343SGC3451213442465233024652466Ratregion
5026462RH13230618841975327519753463Ratregion
5034576BG37332918441258530012585856Ratregion
5026686RH133147185498338579834042Ratregion
5034736BI28294315641172315311723309Ratregion
50294210610010I23Rik30941332902013329329Ratregion
5032267AV0284258541069414410694229Ratregion
5035018Cryzl125041319866013198910Ratregion
5026994RH13431921741758346017583677Ratregion
5032469D13Ertd614e22741060733110607558Ratregion
5032469D13Ertd614e22741060733110607558Ratregion
5032615RH134659192450455475045737Ratregion
5032631RH13471919142597360325973794Ratregion
5027289U247038641316284113162927Ratregion
5030001BF38851713441529865615298791Ratregion
5032995RH137229164494422439442407Ratregion
5027715GDB:4584943041057897810579181Ratregion
5030241AW52683118441364407913644263Ratregion
5033369RH13858412841081338910813517Ratregion
5033503RH13906619642563161225631808Ratregion
5033629RH139525197498344449834641Ratregion
5033755RH14000320541144372611443931Ratregion
5025806RH12974919842356110323561301Ratregion
5056653RH14450217741928653819286715Ratregion
5055071RH14358912941406765014067779Ratregion
5058594BE10213915742461735024617507Ratregion
5055831RH14402713142460961024609741Ratregion
5056185RH144232157459089885909145Ratregion
5056231RH14425914541108066611080811Ratregion
5056537RH14443615641073027410730430Ratregion
5056997UniSTS:238161508472225127223020Ratregion
5058938BF39384114242567222225672364Ratregion
5053063RH14243223942513272425132963Ratregion
5058280BF38693919941192697811927177Ratregion
5049956RH13377918041172969711729877Ratregion
5049986RH13379619742507611025076307Ratregion
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5050380RH13402320341012091410121117Ratregion
5053297RH14256711141326393413264045Ratregion
7191223d4bro117341075026410750427Ratregion
5050624RH13416421141416742514167636Ratregion
7193121EN287472229887223075Ratregion
5052450Z3155712742344079323440920Ratregion
5052727RH142237165452179915218160Ratregion
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5052963RH14237516541329678313297330Ratregion
5051384AI85467312141025104810251169Ratregion
5054487RH14325318042597361625973796Ratregion
5053289RH14256223242583909225839324Ratregion
5051533AW55509483451738545173937Ratregion
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5044186RH13045918041433021614330396Ratregion
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5044552RH13066919541420067414200869Ratregion
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5045282RH13108818141075986610760047Ratregion
5045380RH131145186461512526151438Ratregion
5045422RH13116918741936246319362650Ratregion
5045498RH131212204471891387189342Ratregion
5044788RH13080418641174368011743866Ratregion
5048740RH13307818441076631110766495Ratregion
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5047762RH13251418041381324413813424Ratregion
5048128RH132724150454930755493225Ratregion
5039588RH12779221941420367914203898Ratregion
5047356RH13228018541123888211239067Ratregion
5042330RH12937221041421054614210756Ratregion
5042682RH12958118841329683413297404Ratregion
5041968RH12916219241016157010161762Ratregion
5041980RH12916921941421011014210329Ratregion
5039696RH12785420741261237212612579Ratregion
5039838RH12793618241689691216897094Ratregion
5039852RH12794421042607730826077518Ratregion
5039962RH12800919541073177310731968Ratregion
5042332RH12937315841339916713399325Ratregion
5040624RH12839022041165830411658524Ratregion
5040044RH128057196473159007316096Ratregion
5040044RH128057196473159007316096Ratregion
5040168RH12812821041329767213298102Ratregion
5042718RH12960418041316271413162894Ratregion
5041134RH12868218841360786313608051Ratregion
5040634RH128395204494421399442343Ratregion
5042928RH12972718941165486111655049Ratregion
5041272RH12876118641044358010443766Ratregion
5073894RH137700232461663636166595Ratregion
5075476RH13861618141044893610449117Ratregion
5074222RH13789222542573763325737858Ratregion
5075976RH13890613741306852213068659Ratregion
5076404RH13915512141910071419100835Ratregion
5074622RH13812321642493260424932820Ratregion
5075896RH138859136461443116144447Ratregion
5074738RH138190170455395365539706Ratregion
5077166RH13960015041165826111658411Ratregion
5077182RH13960919241044318410443376Ratregion
5077246RH13964618242495101824951200Ratregion
5076166RH13901714342597483125974974Ratregion
5075126RH138413134492620549262188Ratregion
5076888RH13943712041100148011001601Ratregion
5075792RH13879913541352211613522251Ratregion
5077780RH139955203461893366189539Ratregion
5078614RH14044522741316262513162852Ratregion
5078408RH14032519042559922225599412Ratregion
5078562RH14041514041025169210251832Ratregion
5079248RH14084119341325587913256072Ratregion
5079330RH14092018341016157410161757Ratregion
5080314RH14150821141371142813711639Ratregion
5080406RH14156118442492530624925490Ratregion
5078634RH14045810941165830011658409Ratregion
5073784RH13763624842492342224923670Ratregion
5070638RH13461819741144963411449831Ratregion
5070638RH13461819741144963411449831Ratregion
5073896RH13770121442594821625948430Ratregion
5073900RH137703176456965175696693Ratregion
5074056RH13779317241589763615897808Ratregion
5074584RH13810112541758407917584204Ratregion
5074684RH13815918341055586310556046Ratregion
5071610RH13518219841012109510121293Ratregion
5063372BI30177922041492966214929889Ratregion
5066616AU04825215742034855720348714Ratregion
5066828AU04812717541907304619073221Ratregion
5067220AU04788917941092643410926617Ratregion
5068082AU04735814942629009626290245Ratregion
5068264AU04725115741734318317343342Ratregion
5068332AU04721016842710021027100378Ratregion
5069480AU04647014941453364814533793Ratregion
5070053RH94441157474450077445166Ratregion
5070097RH9447119241689549716895689Ratregion
5068930AU04683528341594318415943469Ratregion
5070492Cacna2d116441895067318950839Ratregion
5070498UniSTS:166287041079459310794830Ratregion
5063638BE10788415441357358213573736Ratregion
5065230BE12123517741976234719762524Ratregion
5065398BE11532916842461458824614756Ratregion
5063728BF40484115542598441025984565Ratregion
5062472BE10671315141442979414429946Ratregion
5060862BF39585123041157061011570841Ratregion
5064296BF399023162498769589877120Ratregion
5064444BF39924814741570289415703041Ratregion
5062854AA95520614241371082013710962Ratregion
5064552BE10811415141305511513055266Ratregion
5063004BI29570515441867391918674073Ratregion
5066472AU04833618541802781318027998Ratregion
5087889Gnai118341689687516897058Ratregion
5089753AU04934228141953615719536440Ratregion
5088959AU04887016242124464721244809Ratregion
5089001AU04889622141896108818961308Ratregion
5089889AU04942416441121796811218124Ratregion
5083443BF39126422341282310612823329Ratregion
5089571AU04923422041465739414657933Ratregion
5089571AU04923422041465771514657933Ratregion
5090711AU049918169488365508836719Ratregion
5090595AU049846180469708756971055Ratregion
5081601BE11753115041935889219359042Ratregion
5084586AA85069218241438765514387837Ratregion
5090201AU04961017941447061214470791Ratregion
5081268RH14206220042560775525607955Ratregion
5085296BQ19585115341165729811657451Ratregion
5085860BF39478419441413844814138642Ratregion
5503668Shh260469628216963081Ratregion
5504097px-31e7192458968365897028Ratregion
5504450PMC209527P2155452148955215050Ratregion
5504544PMC30213P213841075542710755743Ratregion
5505496D9S1872780463334676334247Ratregion
5505175Apex118341644583416446017Ratregion
5506264SGC3274752741139955511400082Ratregion
5506620PTPN12_183763141409207514092706Ratregion
5507115UniSTS:22458912642149344921493575Ratregion
5499543AI85403213242597053825970670Ratregion
5499591D7S3202418498343099834727Ratregion
5500637RH13638319941329675813297339Ratregion
5501520RHEB24541031961310319858Ratregion
5501550G3315414341058060310580746Ratregion
5505883Grm36542436503124365096Ratregion
5502999D5Jcs89137482594138259550Ratregion
5502455RH12490310041076872310768823Ratregion
10755486rs6615076342677559126775591Ratregion
Position Markers

Peak: (Il6)
Rat AssemblyChrPosition (strand)Source
GRCr845,889,999 - 5,894,575 (-)NCBI
mRatBN7.245,214,602 - 5,219,178 (-)NCBI
mRatBN7.2 Ensembl45,213,394 - 5,219,178 (-)Ensembl
UTH_Rnor_SHR_Utx410,211,864 - 10,216,458 (-)NCBI
UTH_Rnor_SHRSP_BbbUtx_1.046,026,101 - 6,030,695 (-)NCBI
UTH_Rnor_WKY_Bbb_1.044,372,235 - 4,376,829 (-)NCBI
Rnor_6.043,043,231 - 3,047,807 (+)NCBI
Rnor_6.0 Ensembl43,043,231 - 3,047,807 (+)Ensembl
Rnor_5.043,095,536 - 3,100,112 (+)NCBI
RGSC_v3.44456,799 - 461,376 (-)NCBI
RGSC_v3.14456,798 - 461,376 (-)NCBI
Celera45,093,593 - 5,098,169 (+)NCBI
Cytogenetic Map4q11NCBI


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
724557Plsm1Polydactyly-luxate syndrome (PLS) morphotypes QTL 10.0003forelimb integrity trait (VT:0010562)front foot phalanges count (CMO:0001947)4127716890Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
61408Scl23Serum cholesterol level QTL 230.0005blood HDL phospholipid amount (VT:0010504)serum high density lipoprotein phospholipid level (CMO:0001567)4127716890Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
61351Bp33Blood pressure QTL 330.0018arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4127716890Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat


Additional Information

Database Acc Id Source(s)
NCBI Gene Scl23


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2004-09-08 Scl23  Serum cholesterol level QTL 23  Spl1  Serum phospholipid level QTL 1  Symbol and Name updated 1299863 APPROVED
2003-08-26 Spl1  Serum phospholipid level QTL 1  Lil2  Lipid Level QTL 2  Symbol and Name status set to provisional 632217 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
qtl_general associates with higher level of HDL2 phospholipid in SHR/Ola than that in BN- Lx 61079