Mdfic (MyoD family inhibitor domain containing) - Rat Genome Database

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Gene: Mdfic (MyoD family inhibitor domain containing) Rattus norvegicus
Analyze
Symbol: Mdfic
Name: MyoD family inhibitor domain containing
RGD ID: 1309532
Description: Predicted to enable Tat protein binding activity and cyclin binding activity. Predicted to be involved in several processes, including negative regulation of protein import into nucleus; regulation of DNA-templated transcription; and regulation of signal transduction. Predicted to be located in nucleolus. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in hereditary lymphedema. Orthologous to human MDFIC (MyoD family inhibitor domain containing); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3H-1,2-dithiole-3-thione; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: Kdt1; kidney cell line derived transcript 1; LOC362325; MyoD family inhibitor domain containing protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8444,938,301 - 45,018,157 (+)NCBIGRCr8
mRatBN7.2443,972,310 - 44,052,162 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl443,972,507 - 44,052,161 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx448,964,748 - 49,044,369 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0444,885,639 - 44,965,252 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0443,294,399 - 43,374,028 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0442,202,546 - 42,282,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl442,202,838 - 42,282,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0441,790,199 - 41,870,162 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4441,241,856 - 41,321,515 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1441,357,957 - 41,436,075 (+)NCBI
Celera439,295,515 - 39,374,417 (+)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,ISO)
nucleolus  (ISO)
nucleus  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10671520   PMID:11139147   PMID:12192039   PMID:12944466   PMID:15207726   PMID:15465018   PMID:16260749   PMID:17891141  


Genomics

Comparative Map Data
Mdfic
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8444,938,301 - 45,018,157 (+)NCBIGRCr8
mRatBN7.2443,972,310 - 44,052,162 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl443,972,507 - 44,052,161 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx448,964,748 - 49,044,369 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0444,885,639 - 44,965,252 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0443,294,399 - 43,374,028 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0442,202,546 - 42,282,499 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl442,202,838 - 42,282,496 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0441,790,199 - 41,870,162 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4441,241,856 - 41,321,515 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1441,357,957 - 41,436,075 (+)NCBI
Celera439,295,515 - 39,374,417 (+)NCBICelera
Cytogenetic Map4q22NCBI
MDFIC
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387114,922,094 - 115,019,917 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7114,922,094 - 115,019,917 (+)EnsemblGRCh38hg38GRCh38
GRCh377114,562,149 - 114,659,971 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367114,349,445 - 114,446,501 (+)NCBINCBI36Build 36hg18NCBI36
Celera7109,368,760 - 109,466,574 (+)NCBICelera
Cytogenetic Map7q31.1-q31.2NCBI
HuRef7108,926,620 - 109,024,416 (+)NCBIHuRef
CHM1_17114,495,574 - 114,593,313 (+)NCBICHM1_1
T2T-CHM13v2.07116,236,858 - 116,334,721 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27113,957,476 - 114,055,279 (+)NCBI
Mdfic
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39615,720,660 - 15,802,168 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl615,720,660 - 15,802,168 (+)EnsemblGRCm39 Ensembl
GRCm38615,720,566 - 15,802,169 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl615,720,661 - 15,802,169 (+)EnsemblGRCm38mm10GRCm38
MGSCv37615,670,661 - 15,752,169 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36615,670,712 - 15,752,165 (+)NCBIMGSCv36mm8
Celera615,809,642 - 15,891,229 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map66.85NCBI
Mdfic
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543220,808,499 - 20,871,886 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543220,790,404 - 20,869,521 (+)NCBIChiLan1.0ChiLan1.0
MDFIC
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26151,743,941 - 151,841,460 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan173,754,973 - 3,852,885 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07106,886,481 - 106,983,546 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17119,582,927 - 119,678,976 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7119,584,817 - 119,678,614 (+)Ensemblpanpan1.1panPan2
MDFIC
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11454,063,832 - 54,153,346 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1454,063,769 - 54,166,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1453,271,050 - 53,562,174 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01453,914,522 - 54,206,593 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1453,980,365 - 54,204,708 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11453,945,388 - 54,236,360 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01453,631,893 - 53,923,655 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01454,005,559 - 54,296,821 (+)NCBIUU_Cfam_GSD_1.0
Mdfic
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511842,765,012 - 42,852,780 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365893,838,064 - 3,925,029 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365893,838,064 - 3,925,029 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MDFIC
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1831,027,056 - 31,125,465 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11831,026,048 - 31,125,664 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21833,266,209 - 33,454,034 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MDFIC
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12183,624,021 - 83,721,584 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2183,625,299 - 83,718,507 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604220,049,168 - 20,140,654 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mdfic
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248274,499,287 - 4,585,771 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248274,499,655 - 4,586,301 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mdfic
193 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:287
Count of miRNA genes:173
Interacting mature miRNAs:215
Transcripts:ENSRNOT00000042273
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
2290374Gluco32Glucose level QTL 326.27blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43717795044463908Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat

Markers in Region
RH130457  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2444,051,774 - 44,051,957 (+)MAPPERmRatBN7.2
Rnor_6.0442,282,110 - 42,282,292NCBIRnor6.0
Rnor_5.0441,869,773 - 41,869,955UniSTSRnor5.0
RGSC_v3.4441,321,128 - 41,321,310UniSTSRGSC3.4
Celera439,374,030 - 39,374,212UniSTS
RH 3.4 Map4278.62UniSTS
Cytogenetic Map4q21UniSTS
RH131048  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2444,049,939 - 44,050,128 (+)MAPPERmRatBN7.2
Rnor_6.0442,280,275 - 42,280,463NCBIRnor6.0
Rnor_5.0441,867,938 - 41,868,126UniSTSRnor5.0
RGSC_v3.4441,319,293 - 41,319,481UniSTSRGSC3.4
Celera439,372,195 - 39,372,383UniSTS
RH 3.4 Map4277.0UniSTS
Cytogenetic Map4q21UniSTS
AU048386  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2443,972,048 - 43,972,220 (+)MAPPERmRatBN7.2
Rnor_6.0442,202,380 - 42,202,551NCBIRnor6.0
Rnor_5.0441,790,037 - 41,790,208UniSTSRnor5.0
RGSC_v3.4441,241,398 - 41,241,569UniSTSRGSC3.4
Celera439,295,057 - 39,295,228UniSTS
Cytogenetic Map4q21UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 14 32 22 13 22 1 1 20 32 11 1
Low 2 29 25 19 6 19 7 10 74 15 8 7
Below cutoff 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001105668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236102 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236103 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC094565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC097143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC136101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AI029676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB325630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB785173 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV106654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN932316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV725464 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000082453   ⟹   ENSRNOP00000073480
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl443,972,507 - 44,052,161 (+)Ensembl
Rnor_6.0 Ensembl442,202,838 - 42,282,496 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109211   ⟹   ENSRNOP00000076900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl443,972,507 - 44,050,555 (+)Ensembl
RefSeq Acc Id: NM_001105668   ⟹   NP_001099138
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,938,503 - 45,018,157 (+)NCBI
mRatBN7.2443,972,507 - 44,052,162 (+)NCBI
Rnor_6.0442,202,838 - 42,282,497 (+)NCBI
Rnor_5.0441,790,199 - 41,870,162 (+)NCBI
RGSC_v3.4441,241,856 - 41,321,515 (+)RGD
Celera439,295,515 - 39,374,417 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236102   ⟹   XP_006236164
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,938,321 - 45,018,153 (+)NCBI
mRatBN7.2443,972,326 - 44,052,160 (+)NCBI
Rnor_6.0442,202,643 - 42,282,499 (+)NCBI
Rnor_5.0441,790,199 - 41,870,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236103   ⟹   XP_006236165
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,938,307 - 44,994,623 (+)NCBI
mRatBN7.2443,972,312 - 44,028,623 (+)NCBI
Rnor_6.0442,202,546 - 42,258,228 (+)NCBI
Rnor_5.0441,790,199 - 41,870,162 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039107769   ⟹   XP_038963697
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,938,314 - 45,012,326 (+)NCBI
mRatBN7.2443,972,320 - 44,049,749 (+)NCBI
RefSeq Acc Id: XM_039107770   ⟹   XP_038963698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8444,938,301 - 45,018,153 (+)NCBI
mRatBN7.2443,972,310 - 44,052,160 (+)NCBI
RefSeq Acc Id: NP_001099138   ⟸   NM_001105668
- UniProtKB: D3ZVM7 (UniProtKB/TrEMBL),   A6IE11 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236165   ⟸   XM_006236103
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006236164   ⟸   XM_006236102
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000073480   ⟸   ENSRNOT00000082453
RefSeq Acc Id: XP_038963698   ⟸   XM_039107770
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038963697   ⟸   XM_039107769
- Peptide Label: isoform X3
- UniProtKB: A0A8I5Y5P6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000076900   ⟸   ENSRNOT00000109211

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZVM7-F1-model_v2 AlphaFold D3ZVM7 1-247 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692886
Promoter ID:EPDNEW_R3411
Type:initiation region
Name:Mdfic_1
Description:MyoD family inhibitor domain containing
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0442,202,831 - 42,202,891EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1309532 AgrOrtholog
BioCyc Gene G2FUF-45591 BioCyc
Ensembl Genes ENSRNOG00000053787 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082453 ENTREZGENE
  ENSRNOT00000082453.2 UniProtKB/TrEMBL
  ENSRNOT00000109211.1 UniProtKB/TrEMBL
InterPro MDFI/MDFIC UniProtKB/TrEMBL
KEGG Report rno:362325 UniProtKB/TrEMBL
NCBI Gene 362325 ENTREZGENE
PANTHER MYOD FAMILY INHIBITOR DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  PTHR15304 UniProtKB/TrEMBL
Pfam MDFI UniProtKB/TrEMBL
PhenoGen Mdfic PhenoGen
RatGTEx ENSRNOG00000053787 RatGTEx
UniProt A0A8I5Y5P6 ENTREZGENE, UniProtKB/TrEMBL
  A6IE11 ENTREZGENE, UniProtKB/TrEMBL
  D3ZVM7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Mdfic  MyoD family inhibitor domain containing   Mdfic_predicted  MyoD family inhibitor domain containing (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Mdfic_predicted  MyoD family inhibitor domain containing (predicted)  Kdt1_predicted  kidney cell line derived transcript 1 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Kdt1_predicted  kidney cell line derived transcript 1 (predicted)      Symbol and Name status set to approved 70820 APPROVED