Cfap69 (cilia and flagella associated protein 69) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cfap69 (cilia and flagella associated protein 69) Rattus norvegicus
Analyze
Symbol: Cfap69
Name: cilia and flagella associated protein 69
RGD ID: 6496360
Description: Predicted to be involved in several processes, including positive regulation of fertilization; positive regulation of flagellated sperm motility; and response to odorant. Predicted to act upstream of or within sperm axoneme assembly. Predicted to be located in cytoplasm. Predicted to be active in non-motile cilium and sperm midpiece. Human ortholog(s) of this gene implicated in spermatogenic failure 24. Orthologous to human CFAP69 (cilia and flagella associated protein 69); INTERACTS WITH bisphenol A; endosulfan; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cilia- and flagella-associated protein 69; hypothetical protein LOC296824; hypothetical protein LOC679609; hypothetical protein LOC679610; LOC100910867; LOC679610; MGC72627; similar to RIKEN cDNA A330021E22; uncharacterized LOC100910867; uncharacterized protein LOC296824
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8429,334,624 - 29,405,513 (+)NCBIGRCr8
mRatBN7.2428,379,604 - 28,452,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl428,375,996 - 28,450,698 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0425,538,513 - 25,611,470 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl425,538,497 - 25,609,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0425,445,683 - 25,518,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4425,065,221 - 25,136,471 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera423,824,221 - 23,897,166 (+)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (ISO)
non-motile cilium  (IBA,ISO)
sperm midpiece  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:28495971   PMID:29606301  


Genomics

Comparative Map Data
Cfap69
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8429,334,624 - 29,405,513 (+)NCBIGRCr8
mRatBN7.2428,379,604 - 28,452,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl428,375,996 - 28,450,698 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0425,538,513 - 25,611,470 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl425,538,497 - 25,609,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0425,445,683 - 25,518,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4425,065,221 - 25,136,471 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera423,824,221 - 23,897,166 (+)NCBICelera
Cytogenetic Map4q13NCBI
CFAP69
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38790,245,174 - 90,323,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl790,245,174 - 90,311,063 (+)EnsemblGRCh38hg38GRCh38
GRCh37789,874,488 - 89,940,377 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36789,712,461 - 89,777,624 (+)NCBINCBI36Build 36hg18NCBI36
Celera784,578,592 - 84,644,463 (+)NCBICelera
Cytogenetic Map7q21.13NCBI
HuRef784,484,583 - 84,549,528 (+)NCBIHuRef
CHM1_1789,804,453 - 89,870,457 (+)NCBICHM1_1
T2T-CHM13v2.0791,493,482 - 91,569,216 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2789,205,264 - 89,271,137 (+)NCBI
Cfap69
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3955,629,284 - 5,714,232 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl55,629,278 - 5,714,239 (-)EnsemblGRCm39 Ensembl
GRCm3855,579,278 - 5,664,232 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl55,579,278 - 5,664,239 (-)EnsemblGRCm38mm10GRCm38
MGSCv3755,580,982 - 5,664,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3655,586,988 - 5,670,238 (-)NCBIMGSCv36mm8
Celera55,527,663 - 5,605,661 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.07NCBI
Cfap69
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554327,501,642 - 7,571,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554327,501,908 - 7,569,799 (+)NCBIChiLan1.0ChiLan1.0
CFAP69
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26108,140,930 - 108,246,399 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17156,406,063 - 156,511,038 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0782,254,266 - 82,353,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1795,856,393 - 95,936,535 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl795,856,393 - 95,922,012 (+)Ensemblpanpan1.1panPan2
CFAP69
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11416,154,334 - 16,209,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1416,154,562 - 16,209,858 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1415,724,650 - 15,780,123 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01415,960,297 - 16,015,368 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1415,960,530 - 16,015,450 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11416,120,881 - 16,175,655 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01415,839,436 - 15,894,879 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01416,125,476 - 16,180,557 (+)NCBIUU_Cfam_GSD_1.0
Cfap69
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511829,596,409 - 29,674,545 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366213,703,600 - 3,772,019 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366213,704,718 - 3,772,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP69
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl970,373,527 - 70,430,378 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1970,373,422 - 70,430,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2976,943,275 - 76,989,743 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP69
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12158,617,190 - 58,684,179 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604245,541,072 - 45,608,062 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap69
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248092,917,122 - 2,981,123 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248092,916,614 - 2,947,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cfap69
362 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000008517, ENSRNOT00000009264, ENSRNOT00000068355
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
1641905Colcr1Colorectal carcinoma resistance QTL 14.30.0003intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)4129494328Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
1358201Gluco12Glucose level QTL121.6adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake (CMO:0000870)4521839229593287Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat

Markers in Region
RH132406  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2428,449,858 - 28,450,603 (+)MAPPERmRatBN7.2
Rnor_6.0425,608,767 - 25,609,511NCBIRnor6.0
Rnor_5.0425,515,935 - 25,516,679UniSTSRnor5.0
RGSC_v3.4425,135,480 - 25,136,224UniSTSRGSC3.4
Celera423,894,463 - 23,895,207UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 141 57 33
Low 21 135 173 95 69 95 36 42 109 115 88 24 24
Below cutoff 6 52 52 52 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003749688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC111647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000009264   ⟹   ENSRNOP00000009264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl428,379,609 - 28,450,698 (+)Ensembl
Rnor_6.0 Ensembl425,538,497 - 25,609,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112626   ⟹   ENSRNOP00000093632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl428,375,996 - 28,450,698 (+)Ensembl
RefSeq Acc Id: XM_003749688   ⟹   XP_003749736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,334,624 - 29,405,513 (+)NCBI
mRatBN7.2428,379,604 - 28,452,562 (+)NCBI
Rnor_6.0425,538,513 - 25,611,470 (+)NCBI
Rnor_5.0425,445,683 - 25,518,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236074   ⟹   XP_006236136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,367,633 - 29,405,513 (+)NCBI
mRatBN7.2428,412,805 - 28,452,562 (+)NCBI
Rnor_6.0425,571,764 - 25,611,470 (+)NCBI
Rnor_5.0425,445,683 - 25,518,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762733   ⟹   XP_008760955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,350,555 - 29,405,513 (+)NCBI
mRatBN7.2428,393,002 - 28,452,562 (+)NCBI
Rnor_6.0425,554,662 - 25,611,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762734   ⟹   XP_008760956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,350,555 - 29,405,513 (+)NCBI
mRatBN7.2428,395,748 - 28,452,562 (+)NCBI
Rnor_6.0425,554,665 - 25,611,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108576   ⟹   XP_038964504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,369,054 - 29,405,513 (+)NCBI
mRatBN7.2428,414,228 - 28,452,562 (+)NCBI
RefSeq Acc Id: XM_063286814   ⟹   XP_063142884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,341,340 - 29,405,513 (+)NCBI
RefSeq Acc Id: XP_003749736   ⟸   XM_003749688
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AJA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236136   ⟸   XM_006236074
- Peptide Label: isoform X3
- UniProtKB: A0A8I6AJA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760955   ⟸   XM_008762733
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJA3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760956   ⟸   XM_008762734
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJA3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009264   ⟸   ENSRNOT00000009264
RefSeq Acc Id: XP_038964504   ⟸   XM_039108576
- Peptide Label: isoform X4
- UniProtKB: A6K258 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000093632   ⟸   ENSRNOT00000112626
RefSeq Acc Id: XP_063142884   ⟸   XM_063286814
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJA3 (UniProtKB/TrEMBL)
Protein Domains
Cilia- and flagella-associated protein 69 ARM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7D1-F1-model_v2 AlphaFold D4A7D1 1-941 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692841
Promoter ID:EPDNEW_R3361
Type:initiation region
Name:Cfap69_1
Description:cilia and flagella associated protein 69
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0425,538,513 - 25,538,573EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:6496360 AgrOrtholog
BioCyc Gene G2FUF-45796 BioCyc
Ensembl Genes ENSRNOG00000006114 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009264.6 UniProtKB/TrEMBL
  ENSRNOT00000112626.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5600085 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CFA69 UniProtKB/TrEMBL
  CFA69_ARM_dom UniProtKB/TrEMBL
MGC_CLONE MGC:72627 IMAGE-MGC_LOAD
NCBI Gene LOC100910867 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 UniProtKB/TrEMBL
Pfam CFA69_ARM_rpt UniProtKB/TrEMBL
PhenoGen Cfap69 PhenoGen
RatGTEx ENSRNOG00000006114 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AJA3 ENTREZGENE, UniProtKB/TrEMBL
  A6K258 ENTREZGENE, UniProtKB/TrEMBL
  D4A7D1_RAT UniProtKB/TrEMBL
  Q6P6X4_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-03 Cfap69  cilia and flagella associated protein 69  MGC72627  similar to RIKEN cDNA A330021E22  Data merged from RGD:1549764 737654 APPROVED
2015-07-29 Cfap69  cilia and flagella associated protein 69  LOC679610  hypothetical protein LOC679609  Data merged from RGD:1585979 737654 PROVISIONAL
2015-06-12 Cfap69  cilia and flagella associated protein 69  LOC100910867  uncharacterized LOC100910867  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100910867  uncharacterized LOC100910867      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC679610  hypothetical protein LOC679609  LOC682900  hypothetical protein LOC682900  Data merged from RGD:1592843 1643240 APPROVED
2006-11-20 LOC682900  hypothetical protein LOC682900      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679610  hypothetical protein LOC679609      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-09-15 MGC72627  similar to RIKEN cDNA A330021E22      Symbol and Name status set to provisional 70820 PROVISIONAL