Cfap69 (cilia and flagella associated protein 69) - Rat Genome Database

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Gene: Cfap69 (cilia and flagella associated protein 69) Rattus norvegicus
Analyze
Symbol: Cfap69
Name: cilia and flagella associated protein 69
RGD ID: 6496360
Description: Predicted to be involved in several processes, including positive regulation of fertilization; positive regulation of flagellated sperm motility; and response to odorant. Predicted to act upstream of or within sperm axoneme assembly. Predicted to be located in cytoplasm. Predicted to be active in non-motile cilium and sperm midpiece. Human ortholog(s) of this gene implicated in spermatogenic failure 24. Orthologous to human CFAP69 (cilia and flagella associated protein 69); INTERACTS WITH bisphenol A; endosulfan; gentamycin.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cilia- and flagella-associated protein 69; hypothetical protein LOC296824; hypothetical protein LOC679609; hypothetical protein LOC679610; LOC100910867; LOC679610; MGC72627; similar to RIKEN cDNA A330021E22; uncharacterized LOC100910867; uncharacterized protein LOC296824
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8429,334,624 - 29,405,513 (+)NCBIGRCr8
mRatBN7.2428,379,604 - 28,452,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl428,375,996 - 28,450,698 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0425,538,513 - 25,611,470 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl425,538,497 - 25,609,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0425,445,683 - 25,518,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4425,065,221 - 25,136,471 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera423,824,221 - 23,897,166 (+)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cfap69Ratpleomorphic xanthoastrocytoma  ISOCFAP69 (Homo sapiens)8554872ClinVar Annotator: match by term: Pleomorphic xanthoastrocytomaClinVarPMID:28299358
Cfap69Ratspermatogenic failure 24  ISOCFAP69 (Homo sapiens)8554872ClinVar more ...ClinVarPMID:25741868 more ...
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cfap69Ratspermatogenic failure 24  ISSCfap69 (Mus musculus)13592920OMIM:617959MouseDO 
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cfap69Ratspermatogenic failure 24  ISOCFAP69 (Homo sapiens)7240710 OMIM 

1 to 20 of 46 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cfap69Rat2,3,7,8-tetrachlorodibenzodioxine affects expressionISOCFAP69 (Homo sapiens)6480464Tetrachlorodibenzodioxin affects the expression of CFAP69 mRNACTDPMID:22298810
Cfap69Rat2,3,7,8-tetrachlorodibenzodioxine decreases expressionISOCfap69 (Mus musculus)6480464Tetrachlorodibenzodioxin results in decreased expression of CFAP69 mRNACTDPMID:33956508
Cfap69Rat4,4'-sulfonyldiphenol increases expressionISOCfap69 (Mus musculus)6480464bisphenol S results in increased expression of CFAP69 mRNACTDPMID:30951980 and PMID:39298647
Cfap69Rataflatoxin B1 decreases methylationISOCFAP69 (Homo sapiens)6480464Aflatoxin B1 results in decreased methylation of CFAP69 geneCTDPMID:27153756
Cfap69Ratall-trans-retinoic acid decreases expressionISOCFAP69 (Homo sapiens)6480464Tretinoin results in decreased expression of CFAP69 mRNACTDPMID:33167477
Cfap69Ratantirheumatic drug decreases expressionISOCFAP69 (Homo sapiens)6480464Antirheumatic Agents results in decreased expression of CFAP69 mRNACTDPMID:24449571
Cfap69Rataristolochic acid A decreases expressionISOCFAP69 (Homo sapiens)6480464aristolochic acid I results in decreased expression of CFAP69 mRNACTDPMID:33212167
Cfap69Ratbenzo[a]pyrene increases expressionISOCFAP69 (Homo sapiens)6480464Benzo(a)pyrene results in increased expression of CFAP69 mRNACTDPMID:22316170
Cfap69Ratbenzo[a]pyrene increases methylationISOCFAP69 (Homo sapiens)6480464Benzo(a)pyrene results in increased methylation of CFAP69 3' UTRCTDPMID:27901495
Cfap69Ratbenzo[a]pyrene decreases methylationISOCFAP69 (Homo sapiens)6480464Benzo(a)pyrene results in decreased methylation of CFAP69 exonCTDPMID:27901495
Cfap69Ratbis(2-ethylhexyl) phthalate multiple interactionsISOCfap69 (Mus musculus)6480464Diethylhexyl Phthalate inhibits the reaction [[Streptozocin co-treated with Dietary Fats] results in decreased expression of CFAP69 mRNA]CTDPMID:33484791
Cfap69Ratbis(2-ethylhexyl) phthalate increases expressionISOCfap69 (Mus musculus)6480464Diethylhexyl Phthalate results in increased expression of CFAP69 mRNACTDPMID:34319233
Cfap69Ratbisphenol A decreases expressionISOCFAP69 (Homo sapiens)6480464bisphenol A results in decreased expression of CFAP69 mRNACTDPMID:27685785
Cfap69Ratbisphenol A multiple interactionsISOCFAP69 (Homo sapiens)6480464[bisphenol A co-treated with Fulvestrant] results in increased methylation of CFAP69 geneCTDPMID:31601247
Cfap69Ratbisphenol A affects expressionEXP 6480464bisphenol A affects the expression of CFAP69 mRNACTDPMID:30816183
Cfap69Ratbutanal decreases expressionISOCFAP69 (Homo sapiens)6480464butyraldehyde results in decreased expression of CFAP69 mRNACTDPMID:26079696
Cfap69Ratcalcitriol increases expressionISOCFAP69 (Homo sapiens)6480464Calcitriol results in increased expression of CFAP69 mRNACTDPMID:21592394
Cfap69Ratcalcitriol multiple interactionsISOCFAP69 (Homo sapiens)6480464[Testosterone co-treated with Calcitriol] results in increased expression of CFAP69 mRNACTDPMID:21592394
Cfap69Ratcisplatin decreases expressionISOCFAP69 (Homo sapiens)6480464Cisplatin results in decreased expression of CFAP69 mRNACTDPMID:27392435
Cfap69Ratcisplatin multiple interactionsISOCFAP69 (Homo sapiens)6480464[Cisplatin co-treated with jinfukang] results in decreased expression of CFAP69 mRNACTDPMID:27392435

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Biological Process
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1 to 11 of 11 rows

Cellular Component

  

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
Cfap69Ratprotein binding enablesISOCfap69 (Mus musculus)1624291UniProtKB:G3UZ78 and PMID:36995441RGDPMID:36995441


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:12477932   PMID:28495971   PMID:29606301  



Cfap69
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8429,334,624 - 29,405,513 (+)NCBIGRCr8
mRatBN7.2428,379,604 - 28,452,562 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl428,375,996 - 28,450,698 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0425,538,513 - 25,611,470 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl425,538,497 - 25,609,652 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0425,445,683 - 25,518,638 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4425,065,221 - 25,136,471 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera423,824,221 - 23,897,166 (+)NCBICelera
Cytogenetic Map4q13NCBI
CFAP69
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38790,245,174 - 90,323,723 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl790,245,174 - 90,311,063 (+)EnsemblGRCh38hg38GRCh38
GRCh37789,874,488 - 89,940,377 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36789,712,461 - 89,777,624 (+)NCBINCBI36Build 36hg18NCBI36
Celera784,578,592 - 84,644,463 (+)NCBICelera
Cytogenetic Map7q21.13NCBI
HuRef784,484,583 - 84,549,528 (+)NCBIHuRef
CHM1_1789,804,453 - 89,870,457 (+)NCBICHM1_1
T2T-CHM13v2.0791,493,482 - 91,569,216 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2789,205,264 - 89,271,137 (+)NCBI
Cfap69
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3955,629,284 - 5,714,232 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl55,629,278 - 5,714,239 (-)EnsemblGRCm39 Ensembl
GRCm3855,579,278 - 5,664,232 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl55,579,278 - 5,664,239 (-)EnsemblGRCm38mm10GRCm38
MGSCv3755,580,982 - 5,664,232 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3655,586,988 - 5,670,238 (-)NCBIMGSCv36mm8
Celera55,527,663 - 5,605,661 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map53.07NCBI
Cfap69
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554327,501,642 - 7,571,373 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554327,501,908 - 7,569,799 (+)NCBIChiLan1.0ChiLan1.0
CFAP69
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26108,140,930 - 108,246,399 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17156,406,063 - 156,511,038 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0782,254,266 - 82,353,873 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1795,856,393 - 95,936,535 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl795,856,393 - 95,922,012 (+)Ensemblpanpan1.1panPan2
CFAP69
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11416,154,334 - 16,209,776 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1416,154,562 - 16,209,858 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1415,724,650 - 15,780,123 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01415,960,297 - 16,015,368 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1415,960,530 - 16,015,450 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11416,120,881 - 16,175,655 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01415,839,436 - 15,894,879 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01416,125,476 - 16,180,557 (+)NCBIUU_Cfam_GSD_1.0
Cfap69
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511829,596,409 - 29,674,545 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366213,703,600 - 3,772,019 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366213,704,718 - 3,772,298 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP69
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl970,373,527 - 70,430,378 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1970,373,422 - 70,430,383 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2976,943,275 - 76,989,743 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP69
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12158,617,190 - 58,684,179 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604245,541,072 - 45,608,062 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap69
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248092,917,122 - 2,981,123 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248092,916,614 - 2,947,817 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

.
Variants in Cfap69
362 total Variants

Predicted Target Of
Summary Value
Count of predictions:168
Count of miRNA genes:49
Interacting mature miRNAs:50
Transcripts:ENSRNOT00000008517, ENSRNOT00000009264, ENSRNOT00000068355
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 37 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat

1 to 10 of 37 rows
RH132406  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8429,404,684 - 29,405,429 (+)Marker Load Pipeline
mRatBN7.2428,449,858 - 28,450,603 (+)MAPPERmRatBN7.2
Rnor_6.0425,608,767 - 25,609,511NCBIRnor6.0
Rnor_5.0425,515,935 - 25,516,679UniSTSRnor5.0
RGSC_v3.4425,135,480 - 25,136,224UniSTSRGSC3.4
Celera423,894,463 - 23,895,207UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 30 of 33 rows
RefSeq Transcripts NM_001431973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431976 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431981 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197255 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197256 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197257 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197261 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_197262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003749688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_003753858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006224818 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762733 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008762734 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775661 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008775662 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063286814 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC108334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 30 of 33 rows

Ensembl Acc Id: ENSRNOT00000009264   ⟹   ENSRNOP00000009264
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl428,379,609 - 28,450,698 (+)Ensembl
Rnor_6.0 Ensembl425,538,497 - 25,609,652 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000112626   ⟹   ENSRNOP00000093632
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl428,375,996 - 28,450,698 (+)Ensembl
RefSeq Acc Id: XM_003749688   ⟹   XP_003749736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,334,624 - 29,405,513 (+)NCBI
mRatBN7.2428,379,604 - 28,452,562 (+)NCBI
Rnor_6.0425,538,513 - 25,611,470 (+)NCBI
Rnor_5.0425,445,683 - 25,518,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236074   ⟹   XP_006236136
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,367,633 - 29,405,513 (+)NCBI
mRatBN7.2428,412,805 - 28,452,562 (+)NCBI
Rnor_6.0425,571,764 - 25,611,470 (+)NCBI
Rnor_5.0425,445,683 - 25,518,638 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762733   ⟹   XP_008760955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,350,555 - 29,405,513 (+)NCBI
mRatBN7.2428,393,002 - 28,452,562 (+)NCBI
Rnor_6.0425,554,662 - 25,611,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762734   ⟹   XP_008760956
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,350,555 - 29,405,513 (+)NCBI
mRatBN7.2428,395,748 - 28,452,562 (+)NCBI
Rnor_6.0425,554,665 - 25,611,470 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108576   ⟹   XP_038964504
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,369,054 - 29,405,513 (+)NCBI
mRatBN7.2428,414,228 - 28,452,562 (+)NCBI
RefSeq Acc Id: XM_063286814   ⟹   XP_063142884
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8429,341,340 - 29,405,513 (+)NCBI
RefSeq Acc Id: XP_003749736   ⟸   XM_003749688
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006236136   ⟸   XM_006236074
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_008760955   ⟸   XM_008762733
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008760956   ⟸   XM_008762734
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AJA3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000009264   ⟸   ENSRNOT00000009264
Name Modeler Protein Id AA Range Protein Structure
AF-D4A7D1-F1-model_v2 AlphaFold D4A7D1 1-941 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692841
Promoter ID:EPDNEW_R3361
Type:initiation region
Name:Cfap69_1
Description:cilia and flagella associated protein 69
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0425,538,513 - 25,538,573EPDNEW


1 to 23 of 23 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-45796 BioCyc
Ensembl Genes ENSRNOG00000006114 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009264.6 UniProtKB/TrEMBL
  ENSRNOT00000112626 ENTREZGENE
  ENSRNOT00000112626.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:5600085 IMAGE-MGC_LOAD
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  CFA69 UniProtKB/TrEMBL
  CFA69_ARM_dom UniProtKB/TrEMBL
MGC_CLONE MGC:72627 IMAGE-MGC_LOAD
NCBI Gene LOC100910867 ENTREZGENE
PANTHER CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 UniProtKB/TrEMBL
Pfam CFA69_ARM_rpt UniProtKB/TrEMBL
PhenoGen Cfap69 PhenoGen
RatGTEx ENSRNOG00000006114 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A8I6AJA3 ENTREZGENE, UniProtKB/TrEMBL
  A6K258_RAT UniProtKB/TrEMBL
  D4A7D1_RAT UniProtKB/TrEMBL
  Q6P6X4 ENTREZGENE, UniProtKB/TrEMBL
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Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-03 Cfap69  cilia and flagella associated protein 69  MGC72627  similar to RIKEN cDNA A330021E22  Data merged from RGD:1549764 737654 APPROVED
2015-07-29 Cfap69  cilia and flagella associated protein 69  LOC679610  hypothetical protein LOC679609  Data merged from RGD:1585979 737654 PROVISIONAL
2015-06-12 Cfap69  cilia and flagella associated protein 69  LOC100910867  uncharacterized LOC100910867  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-05 LOC100910867  uncharacterized LOC100910867      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC679610  hypothetical protein LOC679609  LOC682900  hypothetical protein LOC682900  Data merged from RGD:1592843 1643240 APPROVED
2006-11-20 LOC682900  hypothetical protein LOC682900      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC679610  hypothetical protein LOC679609      Symbol and Name status set to provisional 70820 PROVISIONAL
2005-09-15 MGC72627  similar to RIKEN cDNA A330021E22      Symbol and Name status set to provisional 70820 PROVISIONAL