Tac1 (tachykinin, precursor 1) - Rat Genome Database

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Gene: Tac1 (tachykinin, precursor 1) Rattus norvegicus
Analyze
Symbol: Tac1
Name: tachykinin, precursor 1
RGD ID: 3807
Description: Enables substance P receptor binding activity. Involved in several processes, including learning or memory; positive regulation of secretion; and positive regulation of synaptic transmission. Located in extracellular space and plasma membrane. Used to study central sleep apnea and pulmonary hypertension. Biomarker of colitis and respiratory syncytial virus infectious disease. Orthologous to human TAC1 (tachykinin precursor 1); INTERACTS WITH (+)-pilocarpine; (S)-amphetamine; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Also known as: PPT; Ppt5fl; PPTA3; protachykinin-1; RATPPTA3; TAC; Tachykinin (substance P neurokinin A neuropeptide K neuropeptide gamma); Tachykinin (substance P, neurokinin A, neuropeptide K, neuropeptide gamma); tachykinin 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Is Marker For: Strains:   BB/OK  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2435,679,183 - 35,687,180 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl435,679,704 - 35,687,178 (+)Ensembl
Rnor_6.0433,638,853 - 33,646,819 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl433,638,709 - 33,646,819 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0433,499,891 - 33,507,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4432,649,666 - 32,657,632 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1432,768,205 - 32,776,170 (+)NCBI
Celera431,183,136 - 31,191,779 (+)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-pilocarpine  (EXP)
(S)-amphetamine  (EXP,ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2,4,6-trinitrobenzenesulfonic acid  (ISO)
2,4-dinitrobenzenesulfonic acid  (ISO)
2,6-di-tert-butyl-4-methylphenol  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3-\{1-[3-(dimethylamino)propyl]-1H-indol-3-yl\}-4-(1H-indol-3-yl)-1H-pyrrole-2,5-dione  (EXP)
3-nitropropanoic acid  (EXP)
4-hydroxynon-2-enal  (EXP)
6-Cyano-7-nitroquinoxaline-2,3-dione  (EXP)
6-propyl-2-thiouracil  (EXP)
8-Br-cAMP  (ISO)
acetylcholine  (EXP)
acrolein  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
alfuzosin  (EXP)
allyl isothiocyanate  (EXP)
ammonium chloride  (EXP)
amoxapine  (EXP)
amphetamine  (EXP)
Anetholtrithion  (ISO)
anthra[1,9-cd]pyrazol-6(2H)-one  (EXP)
apomorphine  (EXP)
aprepitant  (ISO)
arsenite(3-)  (ISO)
ATP  (EXP)
baclofen  (EXP)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP)
Botulinum toxin type A  (EXP)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (EXP)
capsaicin  (EXP,ISO)
capsazepine  (EXP,ISO)
carbamazepine  (ISO)
carmustine  (ISO)
chlorpyrifos  (EXP)
chromium(6+)  (ISO)
clomipramine  (EXP)
clozapine  (EXP,ISO)
cocaine  (EXP,ISO)
colforsin daropate hydrochloride  (EXP)
Cuprizon  (EXP)
cycloheximide  (EXP)
cyclophosphamide  (EXP,ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
decabromodiphenyl ether  (EXP)
desipramine  (EXP)
dexamethasone  (ISO)
dextran sulfate  (ISO)
diazepam  (EXP)
diazinon  (EXP)
dieldrin  (EXP)
dioxygen  (EXP)
diprotium oxide  (EXP)
disodium cromoglycate  (EXP)
dizocilpine maleate  (EXP)
dobutamine  (ISO)
dodecane  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
entinostat  (ISO)
ethanol  (EXP,ISO)
fluphenazine  (ISO)
folic acid  (ISO)
formaldehyde  (EXP,ISO)
furan  (EXP)
gabapentin  (EXP)
genistein  (EXP)
ginsenoside Re  (ISO)
Goe 6976  (EXP)
GW 4064  (ISO)
haloperidol  (EXP)
herbimycin  (EXP)
histamine  (EXP,ISO)
hydrogen chloride  (EXP)
hydrogen peroxide  (ISO)
icatibant  (EXP)
iloprost  (EXP)
imipramine  (EXP)
indometacin  (EXP)
isoprenaline  (EXP)
kainic acid  (EXP)
Kallidin  (EXP)
lead(0)  (ISO)
lead(2+)  (ISO)
lipopolysaccharide  (EXP,ISO)
lithium atom  (EXP)
lithium hydride  (EXP)
mercury atom  (ISO)
mercury dibromide  (ISO)
mercury dichloride  (ISO)
mercury(0)  (ISO)
methamphetamine  (EXP,ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
mianserin  (EXP)
misoprostol  (EXP)
monosodium L-glutamate  (ISO)
morphine  (EXP,ISO)
N-[2-(4-bromocinnamylamino)ethyl]isoquinoline-5-sulfonamide  (EXP)
N-acetyl-1,4-benzoquinone imine  (EXP)
N-Nitrosopyrrolidine  (ISO)
N-Vanillyloleamide  (ISO)
N1'-[2-[[5-[(dimethylamino)methyl]-2-furanyl]methylthio]ethyl]-N1-methyl-2-nitroethene-1,1-diamine  (ISO)
naloxone  (EXP)
nedocromil  (ISO)
nimesulide  (EXP)
nitroglycerin  (EXP)
nizatidine  (ISO)
nonane  (EXP)
Norbinaltorphimine  (ISO)
NS-398  (EXP)
O-methyleugenol  (ISO)
Olopatadine hydrochloride  (ISO)
omega-conotoxin GVIA  (EXP)
oxaliplatin  (EXP)
oxidopamine  (EXP)
ozone  (ISO)
paclitaxel  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
parathion  (ISO)
PCB138  (ISO)
pemirolast  (EXP)
phencyclidine  (ISO)
phenylarsine oxide  (EXP)
phenylephrine  (EXP)
phenylmercury acetate  (ISO)
phorbol 12,13-dibutanoate  (EXP)
phosphoramidon  (EXP)
piperine  (EXP)
pirinixic acid  (ISO)
potassium atom  (EXP)
potassium chloride  (EXP,ISO)
potassium dichromate  (ISO)
pregabalin  (EXP)
progesterone  (EXP)
prostaglandin D2  (EXP)
prostaglandin E2  (EXP)
quercetin  (ISO)
quinpirole  (EXP)
ranitidine  (ISO)
reserpine  (EXP)
resiniferatoxin  (ISO)
rofecoxib  (ISO)
SB 203580  (EXP)
SB 431542  (EXP,ISO)
scopolamine  (EXP)
serotonin  (EXP)
silicon dioxide  (EXP,ISO)
silver atom  (ISO)
silver(0)  (ISO)
SKF 38393  (EXP)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
Soman  (EXP)
sorbinil  (EXP)
streptozocin  (EXP)
sucrose  (EXP)
T-2 toxin  (ISO)
thapsigargin  (ISO)
theophylline  (ISO)
titanium dioxide  (EXP,ISO)
toluene  (ISO)
toluene 2,4-diisocyanate  (EXP)
toluene 2,6-diisocyanate  (EXP)
triadimefon  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
Triptolide  (ISO)
tunicamycin  (ISO)
tyrphostin AG 1478  (ISO)
U-73122  (EXP)
U69593  (EXP)
urethane  (EXP)
valproic acid  (EXP,ISO)
vorinostat  (ISO)
water  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
antibacterial humoral response  (ISO)
antifungal humoral response  (ISO)
antimicrobial humoral immune response mediated by antimicrobial peptide  (ISO)
associative learning  (IDA)
cellular response to nerve growth factor stimulus  (ISO)
chemical synaptic transmission  (IEA)
defense response to Gram-negative bacterium  (ISO)
defense response to Gram-positive bacterium  (ISO)
detection of temperature stimulus involved in sensory perception of pain  (ISO)
inflammatory response  (IBA,ISO)
innate immune response  (ISO)
killing of cells of other organism  (ISO)
long-term memory  (IDA)
negative regulation of heart rate  (IDA)
negative regulation of neuron death  (ISO)
negative regulation of systemic arterial blood pressure  (ISO)
neuropeptide signaling pathway  (IEA)
positive regulation of action potential  (IDA)
positive regulation of acute inflammatory response  (IDA)
positive regulation of corticosterone secretion  (IDA)
positive regulation of cytosolic calcium ion concentration  (IBA,IDA,ISO)
positive regulation of epithelial cell migration  (IDA)
positive regulation of flagellated sperm motility  (ISO)
positive regulation of lymphocyte proliferation  (IMP)
positive regulation of neuron death  (ISO)
positive regulation of ossification  (IDA)
positive regulation of renal sodium excretion  (IDA)
positive regulation of saliva secretion  (IDA)
positive regulation of sensory perception of pain  (ISO)
positive regulation of stress fiber assembly  (IDA)
positive regulation of synaptic transmission, cholinergic  (IDA)
positive regulation of synaptic transmission, GABAergic  (IDA)
regulation of blood pressure  (IDA)
regulation of sensory perception of pain  (ISO)
response to hormone  (IMP)
response to lipopolysaccharide  (IEP)
response to morphine  (IEP)
response to pain  (ISO)
response to yeast  (ISO)
sensory perception of pain  (ISO)
tachykinin receptor signaling pathway  (IBA,ISO)

Cellular Component

Molecular Function

References

References - curated
1. Amantini C, etal., J Pharmacol Exp Ther. 2008 Oct;327(1):215-25. Epub 2008 Jul 11.
2. Bremer AA, etal., Eur J Pharmacol. 2001 Jul 6;423(2-3):143-7.
3. Cardenas A, etal., Scand J Gastroenterol. 2008 Mar;43(3):328-33.
4. Carter MS and Krause JE, J Neurosci 1990 Jul;10(7):2203-14.
5. Cattaruzza F, etal., Br J Pharmacol. 2009 Feb 16.
6. Caudle RM, etal., BMC Neurosci. 2007 May 10;8:30.
7. Chapman K, etal., Biochim Biophys Acta 1993 Mar 20;1172(3):361-3.
8. Chen CY, etal., J Neurosci. 2009 Mar 4;29(9):2754-61.
9. Chen MJ and Lai YL, Toxicol Appl Pharmacol. 2003 Mar 15;187(3):178-85.
10. Chu HW, etal., J Allergy Clin Immunol. 2000 Oct;106(4):713-22.
11. Evangelista S, etal., Neuropeptides. 2008 Oct-Dec;42(5-6):663-70. Epub 2008 Aug 19.
12. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
13. GOA data from the GO Consortium
14. Goto T, etal., Neuropeptides. 2007 Feb;41(1):25-31. Epub 2007 Jan 3.
15. Harmar AJ, etal., FEBS Lett 1990 Nov 26;275(1-2):22-4.
16. Juszczak M, etal., J Physiol Pharmacol. 2007 Dec;58(4):829-43.
17. Kalra PS and Kalra SP, Brain Res. 1993 May 7;610(2):330-3.
18. Kawaguchi Y, etal., Biochem Biophys Res Commun 1986 Sep 30;139(3):1040-6.
19. Kertes E, etal., Behav Brain Res. 2009 Mar 17;198(2):397-403. Epub 2008 Nov 24.
20. Koeda T, etal., J Physiol Sci. 2007 Dec;57(6):361-6. Epub 2007 Dec 4.
21. Krause JE, etal., Proc Natl Acad Sci U S A 1987 Feb;84(3):881-5.
22. Lau HY and Bhatia M, J Pathol. 2006 Feb;208(3):364-71.
23. Li PC, etal., Am J Physiol Lung Cell Mol Physiol. 2008 May;294(5):L912-20. Epub 2008 Mar 7.
24. McKay LC and Feldman JL, Am J Respir Crit Care Med. 2008 Jul 1;178(1):89-95. Epub 2008 Apr 17.
25. MGD data from the GO Consortium
26. Min MY, etal., Neuroscience. 2008 Jun 2;153(4):1020-33. Epub 2008 Mar 19.
27. Nagashima A, etal., Brain Res. 1989 May 22;487(2):392-6.
28. NCBI rat LocusLink and RefSeq merged data July 26, 2002
29. Perez S, etal., J Neurochem. 2007 Dec;103(6):2153-63. Epub 2007 Oct 18.
30. Perrine SA, etal., Eur J Pharmacol. 2008 Sep 11;592(1-3):1-6. Epub 2008 Jul 2.
31. Piedimonte G, etal., Am J Physiol. 1999 Oct;277(4 Pt 1):L831-40.
32. Reed KL, etal., J Surg Res 2002 Nov;108(1):165-72.
33. RGD automated import pipeline for gene-chemical interactions
34. Sio SW, etal., Am J Respir Crit Care Med. 2010 Jan 1;181(1):36-46. Epub 2009 Oct 1.
35. Tentative Sequence Data IDs. TIGR Gene Index, Rat Data
36. Thomson LM, etal., J Pain. 2008 Jan;9(1):11-9. Epub 2007 Oct 24.
37. Turner DJ, etal., Ann Surg. 2007 Mar;245(3):408-14.
38. Walentinsson A, etal., Cancer Res 2001 Nov 15;61(22):8263-73.
39. Walentinsson A, etal., Mamm Genome 2001 Dec;12(12):900-8.
40. Wang Y, etal., Am J Physiol Regul Integr Comp Physiol. 2008 May;294(5):R1517-23. Epub 2008 Mar 12.
41. Xie C, etal., J Pharmacol Exp Ther. 2008 Jun;325(3):751-7. Epub 2008 Mar 25.
42. Zhang SH, etal., Brain Res Bull. 2008 Jan 31;75(1):138-45. Epub 2007 Sep 7.
Additional References at PubMed
PMID:1317267   PMID:2218531   PMID:2809597   PMID:7519424   PMID:7521790   PMID:8889548   PMID:8957234   PMID:9537322   PMID:9853118   PMID:11805341   PMID:11882578   PMID:11950831  
PMID:11959652   PMID:12074933   PMID:12084526   PMID:12172789   PMID:12183023   PMID:12372698   PMID:12458035   PMID:12489754   PMID:12574450   PMID:12578120   PMID:12620366   PMID:12632517  
PMID:12716968   PMID:12746258   PMID:12888222   PMID:12892378   PMID:14511128   PMID:14552872   PMID:14578115   PMID:14654230   PMID:14684370   PMID:14724197   PMID:15159534   PMID:15879482  
PMID:15978559   PMID:15987503   PMID:15992924   PMID:16198417   PMID:16284585   PMID:16399878   PMID:16477146   PMID:16647007   PMID:16763782   PMID:17101218   PMID:17314299   PMID:17336102  
PMID:17437961   PMID:17492626   PMID:17512547   PMID:17540463   PMID:17655832   PMID:17686587   PMID:17868995   PMID:17952636   PMID:17989135   PMID:18079587   PMID:18208479   PMID:18308827  
PMID:18418359   PMID:18551569   PMID:18580444   PMID:18603306   PMID:18607539   PMID:18615578   PMID:18673452   PMID:18679163   PMID:18945947   PMID:19000921   PMID:19015883   PMID:19125373  
PMID:19283865   PMID:19341730   PMID:19344710   PMID:19429049   PMID:19464118   PMID:19467322   PMID:19490080   PMID:19500558   PMID:19545608   PMID:19575822   PMID:19743505   PMID:19906978  
PMID:19934806   PMID:20074214   PMID:20139325   PMID:20140043   PMID:20218316   PMID:20490673   PMID:20535049   PMID:20540103   PMID:20546710   PMID:20690045   PMID:20865295   PMID:20942583  
PMID:21377453   PMID:21554904   PMID:21611833   PMID:21685692   PMID:21689789   PMID:21809559   PMID:21820035   PMID:21877901   PMID:21908647   PMID:22418790   PMID:22525132   PMID:22531375  
PMID:22559732   PMID:22762361   PMID:22763971   PMID:22765994   PMID:22825006   PMID:23809436   PMID:24010178   PMID:24045094   PMID:24307802   PMID:24760869   PMID:24877063   PMID:25001955  
PMID:25095383   PMID:25550118   PMID:25751638   PMID:25914462   PMID:26349209   PMID:26762802   PMID:27431609   PMID:27706667   PMID:28337884   PMID:28399671   PMID:28500728   PMID:28685530  
PMID:28791754   PMID:30518958   PMID:31922222  


Genomics

Comparative Map Data
Tac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2435,679,183 - 35,687,180 (+)NCBImRatBN7.2
mRatBN7.2 Ensembl435,679,704 - 35,687,178 (+)Ensembl
Rnor_6.0433,638,853 - 33,646,819 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl433,638,709 - 33,646,819 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0433,499,891 - 33,507,857 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4432,649,666 - 32,657,632 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.1432,768,205 - 32,776,170 (+)NCBI
Celera431,183,136 - 31,191,779 (+)NCBICelera
Cytogenetic Map4q21NCBI
TAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl797,732,084 - 97,740,472 (+)EnsemblGRCh38hg38GRCh38
GRCh38797,732,086 - 97,740,472 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh37797,361,398 - 97,369,784 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36797,199,311 - 97,207,720 (+)NCBINCBI36hg18NCBI36
Build 34797,006,025 - 97,014,433NCBI
Celera792,055,970 - 92,064,483 (+)NCBI
Cytogenetic Map7q21.3NCBI
HuRef791,962,648 - 91,971,157 (+)NCBIHuRef
CHM1_1797,291,306 - 97,299,818 (+)NCBICHM1_1
CRA_TCAGchr7v2796,683,759 - 96,692,272 (+)NCBI
Tac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3967,555,061 - 7,562,978 (+)NCBIGRCm39mm39
GRCm39 Ensembl67,554,879 - 7,565,834 (+)Ensembl
GRCm3867,555,061 - 7,562,978 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl67,554,879 - 7,565,834 (+)EnsemblGRCm38mm10GRCm38
MGSCv3767,505,071 - 7,512,973 (+)NCBIGRCm37mm9NCBIm37
MGSCv3667,505,071 - 7,512,973 (+)NCBImm8
Celera67,693,231 - 7,701,130 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map63.31NCBI
Tac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543213,991,414 - 13,999,728 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543213,991,647 - 13,999,665 (+)NCBIChiLan1.0ChiLan1.0
TAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17103,257,450 - 103,266,005 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7103,257,501 - 103,266,389 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v0789,675,834 - 89,684,391 (+)NCBIMhudiblu_PPA_v0panPan3
TAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11422,631,106 - 22,640,283 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1422,632,642 - 22,640,258 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1422,207,754 - 22,215,926 (+)NCBI
ROS_Cfam_1.01422,451,048 - 22,459,223 (+)NCBI
UMICH_Zoey_3.11422,597,269 - 22,605,445 (+)NCBI
UNSW_CanFamBas_1.01422,330,414 - 22,338,555 (+)NCBI
UU_Cfam_GSD_1.01422,594,017 - 22,602,196 (+)NCBI
Tac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511835,921,952 - 35,930,508 (+)NCBI
SpeTri2.0NW_0049365852,932,783 - 2,941,141 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl977,197,535 - 77,206,526 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1977,197,403 - 77,206,529 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2984,764,564 - 84,773,747 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12151,339,085 - 51,347,561 (-)NCBI
ChlSab1.1 Ensembl2151,339,095 - 51,347,550 (-)Ensembl
Vero_WHO_p1.0NW_02366604253,024,229 - 53,032,700 (+)NCBI
Tac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248134,542,226 - 4,550,378 (+)NCBI

Position Markers
D4Mgh31  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0433,641,609 - 33,641,941NCBIRnor6.0
Rnor_5.0433,502,647 - 33,502,979UniSTSRnor5.0
RGSC_v3.4432,652,422 - 32,652,754UniSTSRGSC3.4
Celera431,186,569 - 31,186,901UniSTS
Cytogenetic Map4q21UniSTS
D4Wox30  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0433,637,803 - 33,637,931NCBIRnor6.0
Rnor_5.0433,498,841 - 33,498,969UniSTSRnor5.0
RGSC_v3.4432,648,616 - 32,648,744UniSTSRGSC3.4
Celera431,182,086 - 31,182,214UniSTS
Cytogenetic Map4q21UniSTS
RH127708  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0433,646,516 - 33,646,709NCBIRnor6.0
Rnor_5.0433,507,554 - 33,507,747UniSTSRnor5.0
RGSC_v3.4432,657,329 - 32,657,522UniSTSRGSC3.4
Celera431,191,476 - 31,191,669UniSTS
RH 3.4 Map4212.0UniSTS
Cytogenetic Map4q21UniSTS
RH136646  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0433,645,908 - 33,646,087NCBIRnor6.0
Rnor_5.0433,506,946 - 33,507,125UniSTSRnor5.0
RGSC_v3.4432,656,721 - 32,656,900UniSTSRGSC3.4
Celera431,190,868 - 31,191,047UniSTS
RH 3.4 Map4212.4UniSTS
Cytogenetic Map4q21UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
11530004Niddm71Non-insulin dependent diabetes mellitus QTL 710.001blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)43258419952754138Rat
8655949Rf62Renal function QTL 6222blood urea nitrogen amount (VT:0005265)plasma urea nitrogen level (CMO:0000586)43443011944463908Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat


Related Rat Strains
The following Strains have been annotated to Tac1

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:764
Count of miRNA genes:207
Interacting mature miRNAs:239
Transcripts:ENSRNOT00000009888, ENSRNOT00000034719, ENSRNOT00000052333
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 64
Low 2 7 7 10 13 9
Below cutoff 12 6 4 7 4 3 3 4 20 2 3

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001124768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001124769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001124770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_012666 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039107068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA818532 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC128514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AH002233 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  L07328 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M14312 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M15191 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M34184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  X56306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000009888   ⟹   ENSRNOP00000009888
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl433,638,709 - 33,646,819 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000034719   ⟹   ENSRNOP00000033246
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl433,638,853 - 33,646,817 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000052333   ⟹   ENSRNOP00000048764
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl433,638,853 - 33,646,817 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108392
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl435,679,704 - 35,687,178 (+)Ensembl
RefSeq Acc Id: NM_001124768   ⟹   NP_001118240
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2435,679,183 - 35,687,180 (+)NCBI
Rnor_6.0433,638,853 - 33,646,819 (+)NCBI
Rnor_5.0433,499,891 - 33,507,857 (+)NCBI
RGSC_v3.4432,649,666 - 32,657,632 (+)RGD
Celera431,183,136 - 31,191,779 (+)RGD
Sequence:
RefSeq Acc Id: NM_001124769   ⟹   NP_001118241
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2435,679,183 - 35,687,180 (+)NCBI
Rnor_6.0433,638,853 - 33,646,819 (+)NCBI
Rnor_5.0433,499,891 - 33,507,857 (+)NCBI
RGSC_v3.4432,649,666 - 32,657,632 (+)RGD
Celera431,183,136 - 31,191,779 (+)RGD
Sequence:
RefSeq Acc Id: NM_001124770   ⟹   NP_001118242
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2435,679,183 - 35,687,180 (+)NCBI
Rnor_6.0433,638,853 - 33,646,819 (+)NCBI
Rnor_5.0433,499,891 - 33,507,857 (+)NCBI
RGSC_v3.4432,649,666 - 32,657,632 (+)RGD
Celera431,183,136 - 31,191,779 (+)RGD
Sequence:
RefSeq Acc Id: NM_012666   ⟹   NP_036798
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2435,679,183 - 35,687,180 (+)NCBI
Rnor_6.0433,638,853 - 33,646,819 (+)NCBI
Rnor_5.0433,499,891 - 33,507,857 (+)NCBI
RGSC_v3.4432,649,666 - 32,657,632 (+)RGD
Celera431,183,136 - 31,191,779 (+)RGD
Sequence:
RefSeq Acc Id: XM_039107066   ⟹   XP_038962994
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2435,680,115 - 35,687,180 (+)NCBI
RefSeq Acc Id: XM_039107067   ⟹   XP_038962995
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2435,680,162 - 35,687,180 (+)NCBI
RefSeq Acc Id: XM_039107068   ⟹   XP_038962996
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2435,680,076 - 35,687,180 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_036798   ⟸   NM_012666
- Peptide Label: isoform a precursor
- UniProtKB: P06767 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001118240   ⟸   NM_001124768
- Peptide Label: isoform b precursor
- UniProtKB: P06767 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001118241   ⟸   NM_001124769
- Peptide Label: isoform c precursor
- UniProtKB: P06767 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001118242   ⟸   NM_001124770
- Peptide Label: isoform d precursor
- UniProtKB: P06767 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000009888   ⟸   ENSRNOT00000009888
RefSeq Acc Id: ENSRNOP00000033246   ⟸   ENSRNOT00000034719
RefSeq Acc Id: ENSRNOP00000048764   ⟸   ENSRNOT00000052333
RefSeq Acc Id: XP_038962996   ⟸   XM_039107068
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038962994   ⟸   XM_039107066
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038962995   ⟸   XM_039107067
- Peptide Label: isoform X2

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692868
Promoter ID:EPDNEW_R3393
Type:single initiation site
Name:Tac1_1
Description:tachykinin, precursor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0433,638,841 - 33,638,901EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 6.0)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
ACI/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
ACI/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BBDP/Wor (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
BUF/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
Buf/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
COP/CrCrl (MCW & UW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
University of Wisconsin (Dr. James Shull)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Charles River Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)
DA/OlaHsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
F344/NRrrc (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
F344/Stm (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHH/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FHL/EurMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
FHL/EurMcwi (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
FXLE16/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GH/OmrMcwi (MCW)
Visual CSV TAB Printer
Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
GK/FarMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/Ox (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
HXB10/IpcvMcwi (2019)
Visual CSV TAB Printer
Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/Crl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEW/NCrlBR (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LEXF10A/StmMcwi (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LH/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LL/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
LN/MavRrrcAek (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
M520/NRrrcMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MHS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MNS/Gib (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
MR/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
MWF/Hsd (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SBH/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBH/Ygl sequenced by MCW
SBH/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SBN/Ygl (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: SBN/Ygl sequenced by MCW
SBN/Ygl (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SHR/OlalpcvMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SR/JrHsd (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Harlan Laboratories
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SR/JrHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/Jr (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
SS/JrHsdMcwi (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (MCW)
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Sequenced By: Medical College of Wisconsin (Dr. Howard Jacob)
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA v0.7.7 and GATK v3.2-2
Breeder: Medical College of Wisconsin
Description: Provided by the Medical College of Wisconsin (Dr. Howard Jacob)
SS/JrHsdMcwi (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/Rij (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WAG/RijCrl (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/Gcrc (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (MCW)
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Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin
WKY/NCrl (2019)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (RGD)
Visual CSV TAB Printer
Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WKY/NHsd (RGD)
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Platform: Illumina HiSeq 2000
Secondary Analysis: BWA mem 0.7.15, GATK v.3.6-0
Description: Sequences from Atanur et al and Hermsen et al realigned to the Rnor 6.0 assembly and reanalyzed by RGD
WN/N (2020)
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Sequenced By: MCW
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (MCW)
Visual CSV TAB Printer
Sequenced By: Royal Netherland Academy of Arts and Sciences (Dr. Edwin Cuppen)
Max Delbruck Center for Molecular Medicine (Dr. Norbert Huebner)
Platform: SOLiD 4 and 5500
Secondary Analysis: liftOver (Batch Coordinate Conversion)--genome.ucsc.edu
Breeder: National Institutes of Health
Description: Founder strain for the heterogeneous stock (HS) rat population; SNPs from the RGSC 3.4 assembly were "lifted over" from RGSC 3.4 to Rnor 5.0 and from Rnor 5.0 to Rnor 6.0; Provided by Medical College of Wisconsin

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:3807 AgrOrtholog
Ensembl Genes ENSRNOG00000007374 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000067502 Ensembl
Ensembl Protein ENSRNOP00000009888 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000033246 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOP00000048764 ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000009888 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000034719 ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOT00000052333 ENTREZGENE, UniProtKB/Swiss-Prot
InterPro Tachy_Neuro_lke_CS UniProtKB/Swiss-Prot
  Tachykinin_dom UniProtKB/Swiss-Prot
  Tachykinin_fam UniProtKB/Swiss-Prot
KEGG Report rno:24806 UniProtKB/Swiss-Prot
NCBI Gene 24806 ENTREZGENE
Pfam Tachykinin UniProtKB/Swiss-Prot
PhenoGen Tac1 PhenoGen
PRINTS PROTACHYKNIN UniProtKB/Swiss-Prot
PROSITE TACHYKININ UniProtKB/Swiss-Prot
SMART SM00203 UniProtKB/Swiss-Prot
TIGR TC205233
UniProt P06767 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary P08856 UniProtKB/Swiss-Prot
  P08857 UniProtKB/Swiss-Prot
  P22356 UniProtKB/Swiss-Prot
  Q6LD93 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-03-06 Tac1  tachykinin, precursor 1  Tac1  tachykinin 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2002-06-10 Tac1  Tachykinin (substance P, neurokinin A, neuropeptide K, neuropeptide gamma)      Symbol and Name status set to approved 70586 APPROVED

RGD Curation Notes
Note Type Note Reference
gene_disease upregulated in uterine tumors 70557
gene_expression expressed in uterus 70348
gene_expression expressed in uterus 70557