Samd9l (sterile alpha motif domain containing 9 like) - Rat Genome Database

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Gene: Samd9l (sterile alpha motif domain containing 9 like) Rattus norvegicus
Analyze
Symbol: Samd9l
Name: sterile alpha motif domain containing 9 like (Ensembl:sterile alpha motif domain containing 9-like)
RGD ID: 1562531
Description: Predicted to act upstream of or within several processes, including common myeloid progenitor cell proliferation; endosomal vesicle fusion; and spleen development. Predicted to be located in early endosome and mitochondrion; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',4,4',5-pentachlorobiphenyl.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC100911953; LOC103690031; LOC500015; LOC680260; Samd9l1; similar to mKIAA2005 protein; similar to sterile alpha motif domain containing 9-like; sterile alpha motif domain containing 9 like 1; sterile alpha motif domain containing 9-like; sterile alpha motif domain-containing protein 9-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Samd9l-ps1   Samd9l-ps2  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8432,316,748 - 32,331,112 (-)NCBIGRCr8
mRatBN7.2431,362,054 - 31,376,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl431,361,669 - 31,376,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0428,343,136 - 28,351,062 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0428,245,885 - 28,253,790 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,180,523 - 28,185,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera426,772,101 - 26,784,433 (-)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(-)-demecolcine  (ISO)
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dichloroethane  (ISO)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (EXP)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlordecone  (ISO)
chloroprene  (EXP)
chromium(6+)  (ISO)
cisplatin  (ISO)
cobalt dichloride  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
decabromodiphenyl ether  (ISO)
doxorubicin  (ISO)
epoxiconazole  (ISO)
ferric oxide  (ISO)
formaldehyde  (ISO)
furan  (EXP)
inulin  (ISO)
ketamine  (EXP)
lipopolysaccharide  (ISO)
manganese(II) chloride  (EXP)
nickel atom  (ISO)
paracetamol  (ISO)
pentachlorophenol  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
poly(vinylpyrrolidone)  (EXP)
potassium chromate  (ISO)
propanal  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (EXP,ISO)
silver(0)  (EXP,ISO)
sodium arsenite  (ISO)
sotorasib  (ISO)
succimer  (ISO)
temozolomide  (ISO)
Tesaglitazar  (EXP)
tetrachloromethane  (EXP,ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
trametinib  (ISO)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
tungsten  (ISO)
zidovudine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Samd9l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8432,316,748 - 32,331,112 (-)NCBIGRCr8
mRatBN7.2431,362,054 - 31,376,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl431,361,669 - 31,376,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0428,343,136 - 28,351,062 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0428,245,885 - 28,253,790 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,180,523 - 28,185,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera426,772,101 - 26,784,433 (-)NCBICelera
Cytogenetic Map4q13NCBI
SAMD9L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38793,130,056 - 93,148,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl793,130,056 - 93,148,385 (-)EnsemblGRCh38hg38GRCh38
GRCh37792,759,369 - 92,777,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36792,597,304 - 92,615,616 (-)NCBINCBI36Build 36hg18NCBI36
Build 34792,404,018 - 92,422,331NCBI
Celera787,463,879 - 87,482,190 (-)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef787,368,164 - 87,386,477 (-)NCBIHuRef
CHM1_1792,689,419 - 92,707,735 (-)NCBICHM1_1
T2T-CHM13v2.0794,372,089 - 94,390,420 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2792,088,687 - 92,106,998 (-)NCBI
Samd9l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3963,372,257 - 3,399,458 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl63,372,257 - 3,399,572 (-)EnsemblGRCm39 Ensembl
GRCm3863,372,257 - 3,399,571 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl63,372,257 - 3,399,572 (-)EnsemblGRCm38mm10GRCm38
MGSCv3763,322,257 - 3,349,571 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3663,322,258 - 3,349,571 (-)NCBIMGSCv36mm8
Celera63,522,113 - 3,545,328 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.76NCBI
Samd9l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543210,007,936 - 10,012,693 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543210,007,631 - 10,028,989 (-)NCBIChiLan1.0ChiLan1.0
SAMD9L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26110,974,143 - 110,992,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17159,238,786 - 159,257,101 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0785,086,661 - 85,104,983 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1798,681,426 - 98,699,621 (-)NCBIpanpan1.1PanPan1.1panPan2
SAMD9L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11418,643,693 - 18,665,262 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1418,643,998 - 18,648,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1418,204,411 - 18,225,703 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01418,451,981 - 18,473,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1418,451,992 - 18,473,746 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11418,611,403 - 18,632,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01418,321,286 - 18,342,597 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01418,597,720 - 18,619,223 (-)NCBIUU_Cfam_GSD_1.0
Samd9l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,043,493 - 32,068,074 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936803749,740 - 754,473 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936803731,878 - 754,540 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD9L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12155,865,869 - 55,883,593 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2155,878,526 - 55,883,280 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604248,415,510 - 48,433,406 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Samd9l
130 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:18
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000013044
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41794699962946999Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat

Markers in Region
RH127453  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2431,362,086 - 31,362,274 (-)MAPPERmRatBN7.2
Rnor_6.0431,299,204 - 31,299,391NCBIRnor6.0
Rnor_5.0431,206,143 - 31,206,330UniSTSRnor5.0
RGSC_v3.4428,180,556 - 28,180,743UniSTSRGSC3.4
Celera426,772,134 - 26,772,321UniSTS
RH 3.4 Map4151.6UniSTS
Cytogenetic Map4q13UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419900 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006236084 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108586 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108587 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039108595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285345 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285346 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063285348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC098747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227570 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ234479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000077134   ⟹   ENSRNOP00000069615
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl431,362,077 - 31,374,260 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097932   ⟹   ENSRNOP00000095146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl431,362,062 - 31,374,257 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000102996   ⟹   ENSRNOP00000087311
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl431,361,669 - 31,374,263 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108307   ⟹   ENSRNOP00000090660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl431,361,669 - 31,376,415 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109456   ⟹   ENSRNOP00000094434
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl431,361,669 - 31,374,263 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114698   ⟹   ENSRNOP00000081423
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl431,361,687 - 31,372,200 (-)Ensembl
RefSeq Acc Id: NM_001419900   ⟹   NP_001406829
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,104 (-)NCBI
mRatBN7.2431,362,054 - 31,376,412 (-)NCBI
RefSeq Acc Id: XM_039108586   ⟹   XP_038964514
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,112 (-)NCBI
mRatBN7.2431,362,054 - 31,376,412 (-)NCBI
RefSeq Acc Id: XM_039108587   ⟹   XP_038964515
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,329,573 (-)NCBI
mRatBN7.2431,362,054 - 31,374,262 (-)NCBI
RefSeq Acc Id: XM_039108588   ⟹   XP_038964516
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,112 (-)NCBI
mRatBN7.2431,362,054 - 31,376,412 (-)NCBI
RefSeq Acc Id: XM_039108591   ⟹   XP_038964519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,112 (-)NCBI
mRatBN7.2431,362,054 - 31,376,412 (-)NCBI
RefSeq Acc Id: XM_039108593   ⟹   XP_038964521
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,329,573 (-)NCBI
mRatBN7.2431,362,054 - 31,374,262 (-)NCBI
RefSeq Acc Id: XM_039108594   ⟹   XP_038964522
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,112 (-)NCBI
mRatBN7.2431,362,054 - 31,376,412 (-)NCBI
RefSeq Acc Id: XM_039108595   ⟹   XP_038964523
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,112 (-)NCBI
mRatBN7.2431,362,054 - 31,376,412 (-)NCBI
RefSeq Acc Id: XM_063285345   ⟹   XP_063141415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,329,573 (-)NCBI
RefSeq Acc Id: XM_063285346   ⟹   XP_063141416
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,112 (-)NCBI
RefSeq Acc Id: XM_063285347   ⟹   XP_063141417
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,331,112 (-)NCBI
RefSeq Acc Id: XM_063285348   ⟹   XP_063141418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8432,316,748 - 32,327,118 (-)NCBI
RefSeq Acc Id: XP_038964516   ⟸   XM_039108588
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964523   ⟸   XM_039108595
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964519   ⟸   XM_039108591
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964522   ⟸   XM_039108594
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964514   ⟸   XM_039108586
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964515   ⟸   XM_039108587
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038964521   ⟸   XM_039108593
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000095146   ⟸   ENSRNOT00000097932
Ensembl Acc Id: ENSRNOP00000087311   ⟸   ENSRNOT00000102996
Ensembl Acc Id: ENSRNOP00000069615   ⟸   ENSRNOT00000077134
Ensembl Acc Id: ENSRNOP00000081423   ⟸   ENSRNOT00000114698
Ensembl Acc Id: ENSRNOP00000094434   ⟸   ENSRNOT00000109456
Ensembl Acc Id: ENSRNOP00000090660   ⟸   ENSRNOT00000108307
RefSeq Acc Id: NP_001406829   ⟸   NM_001419900
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141417   ⟸   XM_063285347
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141416   ⟸   XM_063285346
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141415   ⟸   XM_063285345
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063141418   ⟸   XM_063285348
- Peptide Label: isoform X1
- UniProtKB: A0A0G2JVT8 (UniProtKB/TrEMBL)
Protein Domains
SAM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000063679 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000077134.2 UniProtKB/TrEMBL
  ENSRNOT00000097932.1 UniProtKB/TrEMBL
  ENSRNOT00000102996.1 UniProtKB/TrEMBL
  ENSRNOT00000108307.1 UniProtKB/TrEMBL
  ENSRNOT00000109456.1 UniProtKB/TrEMBL
  ENSRNOT00000114698.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  3.30.950.30 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7388575 IMAGE-MGC_LOAD
InterPro SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
  Schlafen_AlbA_2_dom_sf UniProtKB/TrEMBL
MGC_CLONE MGC:112751 IMAGE-MGC_LOAD
NCBI Gene Samd9l ENTREZGENE
PANTHER DED DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 9-LIKE UniProtKB/TrEMBL
PhenoGen Samd9l PhenoGen
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
RatGTEx ENSRNOG00000063679 RatGTEx
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A0G2JVT8 ENTREZGENE, UniProtKB/TrEMBL
  Q4G053_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-03-21 Samd9l  sterile alpha motif domain containing 9 like  Samd9l1  sterile alpha motif domain containing 9 like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2022-12-30 Samd9l1  sterile alpha motif domain containing 9 like 1  Samd9l  sterile alpha motif domain containing 9-like  Name and Symbol changed 629549 APPROVED
2021-03-09 Samd9l  sterile alpha motif domain containing 9-like  LOC103690031  sterile alpha motif domain-containing protein 9-like  Data merged from RGD:9200675 737654 PROVISIONAL
2015-07-29 Samd9l  sterile alpha motif domain containing 9-like  LOC100911953  sterile alpha motif domain-containing protein 9-like  Data merged from RGD:6489828 737654 PROVISIONAL
2015-07-29 Samd9l  sterile alpha motif domain containing 9-like  LOC680260  similar to sterile alpha motif domain containing 9-like  Data merged from RGD:1594171 737654 PROVISIONAL
2014-08-25 LOC103690031  sterile alpha motif domain-containing protein 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2012-07-05 LOC100911953  sterile alpha motif domain-containing protein 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-03-05 Samd9l  sterile alpha motif domain containing 9-like  LOC500015  similar to mKIAA2005 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680260  similar to sterile alpha motif domain containing 9-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-02-09 LOC500015  similar to mKIAA2005 protein      Symbol and Name status set to provisional 70820 PROVISIONAL