SAMD9L (sterile alpha motif domain containing 9 like) - Rat Genome Database

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Gene: SAMD9L (sterile alpha motif domain containing 9 like) Canis lupus familiaris
Analyze
Symbol: SAMD9L
Name: sterile alpha motif domain containing 9 like
RGD ID: 12185828
Description: INVOLVED IN common myeloid progenitor cell proliferation (ortholog); endosomal vesicle fusion (ortholog); hematopoietic progenitor cell differentiation (ortholog); ASSOCIATED WITH genetic disease (ortholog); intellectual disability (ortholog); microcephaly (ortholog); FOUND IN early endosome (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: sterile alpha motif domain-containing protein 9-like
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11418,643,693 - 18,665,262 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1418,643,998 - 18,648,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1418,204,411 - 18,225,703 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01418,451,981 - 18,473,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1418,451,992 - 18,473,746 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11418,611,403 - 18,632,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01418,321,286 - 18,342,597 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01418,597,720 - 18,619,223 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SAMD9L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11418,643,693 - 18,665,262 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1418,643,998 - 18,648,755 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1418,204,411 - 18,225,703 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01418,451,981 - 18,473,504 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1418,451,992 - 18,473,746 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11418,611,403 - 18,632,719 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01418,321,286 - 18,342,597 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01418,597,720 - 18,619,223 (-)NCBIUU_Cfam_GSD_1.0
SAMD9L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38793,130,056 - 93,148,385 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl793,130,056 - 93,148,385 (-)EnsemblGRCh38hg38GRCh38
GRCh37792,759,369 - 92,777,698 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36792,597,304 - 92,615,616 (-)NCBINCBI36Build 36hg18NCBI36
Build 34792,404,018 - 92,422,331NCBI
Celera787,463,879 - 87,482,190 (-)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef787,368,164 - 87,386,477 (-)NCBIHuRef
CHM1_1792,689,419 - 92,707,735 (-)NCBICHM1_1
T2T-CHM13v2.0794,372,089 - 94,390,420 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2792,088,687 - 92,106,998 (-)NCBI
Samd9l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3963,372,257 - 3,399,458 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl63,372,257 - 3,399,572 (-)EnsemblGRCm39 Ensembl
GRCm3863,372,257 - 3,399,571 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl63,372,257 - 3,399,572 (-)EnsemblGRCm38mm10GRCm38
MGSCv3763,322,257 - 3,349,571 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3663,322,258 - 3,349,571 (-)NCBIMGSCv36mm8
Celera63,522,113 - 3,545,328 (-)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.76NCBI
Samd9l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8432,316,748 - 32,331,112 (-)NCBIGRCr8
mRatBN7.2431,362,054 - 31,376,412 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl431,361,669 - 31,376,415 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0428,343,136 - 28,351,062 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0428,245,885 - 28,253,790 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4428,180,523 - 28,185,536 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera426,772,101 - 26,784,433 (-)NCBICelera
Cytogenetic Map4q13NCBI
Samd9l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543210,007,936 - 10,012,693 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543210,007,631 - 10,028,989 (-)NCBIChiLan1.0ChiLan1.0
SAMD9L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26110,974,143 - 110,992,696 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17159,238,786 - 159,257,101 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0785,086,661 - 85,104,983 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1798,681,426 - 98,699,621 (-)NCBIpanpan1.1PanPan1.1panPan2
Samd9l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511832,043,493 - 32,068,074 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936803749,740 - 754,473 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936803731,878 - 754,540 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SAMD9L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12155,865,869 - 55,883,593 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2155,878,526 - 55,883,280 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604248,415,510 - 48,433,406 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in SAMD9L
267 total Variants

Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
6 5 5 23 22 16 6 6 6 6 33 22 12 14 10

Sequence


Ensembl Acc Id: ENSCAFT00000003175   ⟹   ENSCAFP00000042921
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl1418,643,998 - 18,648,755 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845023637   ⟹   ENSCAFP00845018554
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1418,451,992 - 18,473,460 (-)Ensembl
Ensembl Acc Id: ENSCAFT00845023688   ⟹   ENSCAFP00845018595
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl1418,452,020 - 18,473,746 (-)Ensembl
RefSeq Acc Id: XM_038494536   ⟹   XP_038350464
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.11418,611,403 - 18,632,719 (-)NCBI
RefSeq Acc Id: XM_038556828   ⟹   XP_038412756
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.01418,597,720 - 18,619,223 (-)NCBI
RefSeq Acc Id: XM_038620763   ⟹   XP_038476691
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.01418,321,286 - 18,342,597 (-)NCBI
RefSeq Acc Id: XM_038686449   ⟹   XP_038542377
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.01418,451,981 - 18,473,504 (-)NCBI
RefSeq Acc Id: XM_539422   ⟹   XP_539422
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.11418,643,693 - 18,665,262 (-)NCBI
Dog10K_Boxer_Tasha1418,204,411 - 18,225,703 (-)NCBI
Sequence:
RefSeq Acc Id: XP_539422   ⟸   XM_539422
- UniProtKB: A0A8I3NLG4 (UniProtKB/TrEMBL),   A0A8P0PP48 (UniProtKB/TrEMBL),   A0A8C0TE03 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSCAFP00000042921   ⟸   ENSCAFT00000003175
RefSeq Acc Id: XP_038350464   ⟸   XM_038494536
RefSeq Acc Id: XP_038476691   ⟸   XM_038620763
RefSeq Acc Id: XP_038542377   ⟸   XM_038686449
- UniProtKB: A0A8I3NLG4 (UniProtKB/TrEMBL),   A0A8P0PP48 (UniProtKB/TrEMBL),   A0A8C0TE03 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038412756   ⟸   XM_038556828
- UniProtKB: A0A8C0TE03 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSCAFP00845018595   ⟸   ENSCAFT00845023688
Ensembl Acc Id: ENSCAFP00845018554   ⟸   ENSCAFT00845023637
Protein Domains
SAM


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000002007 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00040020621 UniProtKB/TrEMBL
  ENSCAFG00845013275 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000003175.5 UniProtKB/TrEMBL
  ENSCAFT00000104529.1 UniProtKB/TrEMBL
  ENSCAFT00040038136.1 UniProtKB/TrEMBL
  ENSCAFT00845023637 ENTREZGENE
  ENSCAFT00845023637.1 UniProtKB/TrEMBL
  ENSCAFT00845023688.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro SAM UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
KEGG Report cfa:482305 UniProtKB/TrEMBL
NCBI Gene SAMD9L ENTREZGENE
PANTHER DED DOMAIN-CONTAINING PROTEIN UniProtKB/TrEMBL
  STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 9-LIKE UniProtKB/TrEMBL
PROSITE SAM_DOMAIN UniProtKB/TrEMBL
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A8C0TE03 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3NLG4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8P0PP48 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:54356 ENTREZGENE