Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Gene: Col28a1 (collagen type XXVIII alpha 1 chain) Rattus norvegicus
Analyze
Symbol: Col28a1
Name: collagen type XXVIII alpha 1 chain
RGD ID: 1564680
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to basement membrane and extracellular space. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(XXVIII) chain; collagen, type XXVIII, alpha 1; LOC312115; LOW QUALITY PROTEIN: collagen alpha-1(XXVIII) chain; RGD1564680; similar to matrilin 2 precursor
Orthologs:
Homo sapiens (human) : COL28A1 (collagen type XXVIII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col28a1 (collagen, type XXVIII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col28a1 (collagen type XXVIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL28A1 (collagen type XXVIII alpha 1 chain)
Canis lupus familiaris (dog) : COL28A1 (collagen type XXVIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col28a1 (collagen type XXVIII alpha 1 chain)
Sus scrofa (pig) : COL28A1 (collagen type XXVIII alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL28A1 (collagen type XXVIII alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col28a1 (collagen type XXVIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0434,048,074 - 34,198,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl434,048,533 - 34,194,764 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0433,904,586 - 34,058,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4433,043,706 - 33,216,862 (-)NCBIRGSC3.4rn4RGSC3.4
Celera431,574,414 - 31,727,219 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Col28a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564680
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.