Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner
Aging & Age-Related Disease Cancer Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Col28a1 (collagen type XXVIII alpha 1 chain) Rattus norvegicus
Analyze
Symbol: Col28a1
Name: collagen type XXVIII alpha 1 chain
RGD ID: 1564680
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to basement membrane and extracellular space. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: collagen alpha-1(XXVIII) chain; collagen, type XXVIII, alpha 1; LOC312115; LOW QUALITY PROTEIN: collagen alpha-1(XXVIII) chain; RGD1564680; similar to matrilin 2 precursor
Orthologs:
Homo sapiens (human) : COL28A1 (collagen type XXVIII alpha 1 chain)  HGNC  Alliance
Mus musculus (house mouse) : Col28a1 (collagen, type XXVIII, alpha 1)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Col28a1 (collagen type XXVIII alpha 1 chain)
Pan paniscus (bonobo/pygmy chimpanzee) : COL28A1 (collagen type XXVIII alpha 1 chain)
Canis lupus familiaris (dog) : COL28A1 (collagen type XXVIII alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col28a1 (collagen type XXVIII alpha 1 chain)
Sus scrofa (pig) : COL28A1 (collagen type XXVIII alpha 1 chain)
Chlorocebus sabaeus (African green monkey) : COL28A1 (collagen type XXVIII alpha 1 chain)
Heterocephalus glaber (naked mole-rat) : Col28a1 (collagen type XXVIII alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0434,048,074 - 34,198,558 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl434,048,533 - 34,194,764 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0433,904,586 - 34,058,707 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4433,043,706 - 33,216,862 (-)NCBIRGSC3.4rn4RGSC3.4
Celera431,574,414 - 31,727,219 (-)NCBICelera
Cytogenetic Map4q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model

Annotation    (Toggle Annotation Detail/Summary View)

Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
  
More on Col28a1
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1564680
Created: 2006-02-09
Species: Rattus norvegicus
Last Modified: 2020-08-20
Status: ACTIVE



Contact Us |  About Us |  License CC BY 4.0 |  Legal Disclaimer |  © Medical College of Wisconsin
NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.