Mterf1 (mitochondrial transcription termination factor 1) - Rat Genome Database

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Gene: Mterf1 (mitochondrial transcription termination factor 1) Rattus norvegicus
Analyze
Symbol: Mterf1
Name: mitochondrial transcription termination factor 1
RGD ID: 621318
Description: Predicted to enable double-stranded DNA binding activity. Predicted to be involved in DNA geometric change and termination of mitochondrial transcription. Predicted to be located in mitochondrial nucleoid. Predicted to be active in mitochondrial matrix. Orthologous to human MTERF1 (mitochondrial transcription termination factor 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: mitochondrial transcription termination factor; Mterf; transcription termination factor 1, mitochondrial; transcription termination factor, mitochondrial
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,181,048 - 31,188,130 (+)NCBIGRCr8
mRatBN7.2430,226,345 - 30,233,402 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,226,343 - 30,233,584 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,199,159 - 35,206,157 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,125,246 - 31,132,244 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,521,223 - 29,528,221 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,365,310 - 27,372,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,365,376 - 27,372,372 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,268,544 - 27,275,600 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4426,942,113 - 26,949,111 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1426,950,096 - 26,957,093 (+)NCBI
Celera425,651,722 - 25,658,720 (+)NCBICelera
Cytogenetic Map4q13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Direct regulation of mitochondrial RNA synthesis by thyroid hormone. Enriquez JA, etal., Mol Cell Biol 1999 Jan;19(1):657-70.
2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Electronic Transfer of LocusLink and RefSeq Data NCBI rat LocusLink and RefSeq merged data July 26, 2002
5. GOA pipeline RGD automated data pipeline
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15087485   PMID:15582606   PMID:18063578   PMID:18614015   PMID:20550934   PMID:22681889  


Genomics

Comparative Map Data
Mterf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8431,181,048 - 31,188,130 (+)NCBIGRCr8
mRatBN7.2430,226,345 - 30,233,402 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl430,226,343 - 30,233,584 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx435,199,159 - 35,206,157 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0431,125,246 - 31,132,244 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0429,521,223 - 29,528,221 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0427,365,310 - 27,372,374 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl427,365,376 - 27,372,372 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0427,268,544 - 27,275,600 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4426,942,113 - 26,949,111 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1426,950,096 - 26,957,093 (+)NCBI
Celera425,651,722 - 25,658,720 (+)NCBICelera
Cytogenetic Map4q13NCBI
MTERF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38791,870,929 - 91,880,702 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl791,692,008 - 91,880,702 (-)EnsemblGRCh38hg38GRCh38
GRCh37791,500,243 - 91,510,016 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36791,339,957 - 91,347,952 (-)NCBINCBI36Build 36hg18NCBI36
Build 34791,146,855 - 91,154,667NCBI
Celera786,206,613 - 86,214,608 (-)NCBICelera
Cytogenetic Map7q21.2NCBI
HuRef786,109,784 - 86,117,779 (-)NCBIHuRef
CHM1_1791,432,061 - 91,440,056 (-)NCBICHM1_1
T2T-CHM13v2.0793,112,226 - 93,122,026 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2790,832,721 - 90,840,716 (-)NCBI
Mterf1a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3953,914,576 - 3,943,933 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl53,940,581 - 3,943,933 (-)EnsemblGRCm39 Ensembl
GRCm3853,864,565 - 3,893,933 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl53,890,581 - 3,893,933 (-)EnsemblGRCm38mm10GRCm38
MGSCv3753,890,581 - 3,893,933 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3653,896,587 - 3,899,913 (-)NCBIMGSCv36mm8
Celera53,826,887 - 3,830,239 (-)NCBICelera
Cytogenetic Map5A1NCBI
cM Map52.26NCBI
Mterf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554328,906,553 - 8,914,355 (-)NCBIChiLan1.0ChiLan1.0
MTERF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26109,762,375 - 109,770,209 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17157,525,258 - 158,034,828 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0783,873,039 - 83,882,815 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1797,472,983 - 97,480,808 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl797,473,701 - 97,478,476 (-)Ensemblpanpan1.1panPan2
MTERF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11417,537,964 - 17,545,554 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1417,539,309 - 17,545,531 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1417,099,353 - 17,106,975 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01417,344,695 - 17,352,322 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1417,343,025 - 17,352,292 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11417,502,601 - 17,510,213 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01417,217,316 - 17,224,932 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01417,491,537 - 17,499,157 (-)NCBIUU_Cfam_GSD_1.0
Mterf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511830,935,494 - 30,946,583 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366212,422,133 - 2,430,306 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366212,422,107 - 2,431,854 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MTERF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl971,845,662 - 71,853,845 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1971,287,587 - 71,853,866 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2978,333,816 - 78,589,264 (-)NCBISscrofa10.2Sscrofa10.2susScr3
MTERF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12157,108,499 - 57,116,113 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2157,108,537 - 57,116,106 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604247,149,564 - 47,157,493 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mterf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248091,322,155 - 1,333,495 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Mterf1
17 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:18
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000010425
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
631642Stl2Serum triglyceride level QTL 23.3blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521917856647776Rat
6478724Anxrr35Anxiety related response QTL 350.00449defecation behavior trait (VT:0010462)defecation measurement (CMO:0000997)41008408955084089Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
6478769Anxrr48Anxiety related response QTL 480.02514locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)41008408955084089Rat
738021Hcar13Hepatocarcinoma resistance QTL 134.3liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)4132584199Rat
8694374Bw155Body weight QTL 1553.390.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)41008408955084089Rat
9589097Slep11Serum leptin concentration QTL 115.090.001blood leptin amount (VT:0005667)plasma leptin level (CMO:0000781)4131934116Rat
9590304Scort17Serum corticosterone level QTL 174.960.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)41008408955084089Rat
8552903Pigfal2Plasma insulin-like growth factor 1 level QTL 27.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)4131934116Rat
9589046Scfw2Subcutaneous fat weight QTL 25.540.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)4131934116Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
634323Hc2Hypercalciuria QTL 22.15urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)421079645210796Rat
9590100Sffal4Serum free fatty acids level QTL 47.360.05blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)4131934116Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
8552803Bw144Body weight QTL 14416body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)42271068534430484Rat
1300141Bp178Blood pressure QTL 178arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)41002490139524530Rat
1357341Gluco5Glucose level QTL 56.4adipocyte free fatty acid secretion trait (VT:0010465)absolute change in adipocyte free fatty acid secretion per unit volume (CMO:0001446)4133250345Rat
1357343Gluco4Glucose level QTL 40.00002adipocyte glucose uptake trait (VT:0004185)adipocyte maximal glucose uptake to basal glucose uptake ratio (CMO:0000874)4133250345Rat
1354665Stl10Serum triglyceride level QTL 103.57blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42133334344463908Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
61333Gluco16Glucose level QTL 164.30.00001adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)4130372989Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
61415Eae11Experimental allergic encephalomyelitis QTL 112.9nervous system integrity trait (VT:0010566)post-insult time to onset of experimental autoimmune encephalomyelitis (CMO:0001422)4139505420Rat
70222Eae2Experimental allergic encephalomyelitis QTL 24.3nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)42133334339505420Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
631209Bw2Body weight QTL24.2retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)4994088544463908Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 41 51 35 19 35 6 6 74 35 41 11 6
Low 2 6 6 6 2 5 2
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000010425   ⟹   ENSRNOP00000010425
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,226,343 - 30,233,584 (+)Ensembl
Rnor_6.0 Ensembl427,365,376 - 27,372,372 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000094942   ⟹   ENSRNOP00000081415
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,226,384 - 30,233,344 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000105636   ⟹   ENSRNOP00000088641
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,226,360 - 30,233,342 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000112936   ⟹   ENSRNOP00000094949
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl430,226,381 - 30,233,584 (+)Ensembl
RefSeq Acc Id: NM_053499   ⟹   NP_445951
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,181,132 - 31,188,130 (+)NCBI
mRatBN7.2430,226,404 - 30,233,402 (+)NCBI
Rnor_6.0427,365,376 - 27,372,374 (+)NCBI
Rnor_5.0427,268,544 - 27,275,600 (+)NCBI
RGSC_v3.4426,942,113 - 26,949,111 (+)RGD
Celera425,651,722 - 25,658,720 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236069   ⟹   XP_006236131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,181,061 - 31,188,130 (+)NCBI
mRatBN7.2430,226,345 - 30,233,402 (+)NCBI
Rnor_6.0427,365,310 - 27,372,374 (+)NCBI
Rnor_5.0427,268,544 - 27,275,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236071   ⟹   XP_006236133
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,181,048 - 31,188,130 (+)NCBI
mRatBN7.2430,226,360 - 30,233,402 (+)NCBI
Rnor_6.0427,365,310 - 27,372,374 (+)NCBI
Rnor_5.0427,268,544 - 27,275,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236072   ⟹   XP_006236134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,181,082 - 31,188,130 (+)NCBI
mRatBN7.2430,226,362 - 30,233,402 (+)NCBI
Rnor_6.0427,365,310 - 27,372,374 (+)NCBI
Rnor_5.0427,268,544 - 27,275,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236073   ⟹   XP_006236135
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,181,077 - 31,188,130 (+)NCBI
mRatBN7.2430,226,350 - 30,233,402 (+)NCBI
Rnor_6.0427,365,310 - 27,372,374 (+)NCBI
Rnor_5.0427,268,544 - 27,275,600 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108486   ⟹   XP_038964414
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,181,061 - 31,188,130 (+)NCBI
mRatBN7.2430,226,345 - 30,233,402 (+)NCBI
RefSeq Acc Id: XM_063286781   ⟹   XP_063142851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8431,181,105 - 31,188,130 (+)NCBI
RefSeq Acc Id: NP_445951   ⟸   NM_053499
- Peptide Label: precursor
- UniProtKB: Q9EPI8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006236131   ⟸   XM_006236069
- Peptide Label: isoform X1
- UniProtKB: G3V6Z9 (UniProtKB/TrEMBL),   A6K274 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236133   ⟸   XM_006236071
- Peptide Label: isoform X1
- UniProtKB: G3V6Z9 (UniProtKB/TrEMBL),   A6K274 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236134   ⟸   XM_006236072
- Peptide Label: isoform X1
- UniProtKB: G3V6Z9 (UniProtKB/TrEMBL),   A6K274 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236135   ⟸   XM_006236073
- Peptide Label: isoform X1
- UniProtKB: G3V6Z9 (UniProtKB/TrEMBL),   A6K274 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000010425   ⟸   ENSRNOT00000010425
RefSeq Acc Id: XP_038964414   ⟸   XM_039108486
- Peptide Label: isoform X1
- UniProtKB: G3V6Z9 (UniProtKB/TrEMBL),   A6K274 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000081415   ⟸   ENSRNOT00000094942
RefSeq Acc Id: ENSRNOP00000094949   ⟸   ENSRNOT00000112936
RefSeq Acc Id: ENSRNOP00000088641   ⟸   ENSRNOT00000105636
RefSeq Acc Id: XP_063142851   ⟸   XM_063286781
- Peptide Label: isoform X1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9EPI8-F1-model_v2 AlphaFold Q9EPI8 1-374 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692843
Promoter ID:EPDNEW_R3368
Type:initiation region
Name:Mterf1_1
Description:mitochondrial transcription termination factor 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0427,365,359 - 27,365,419EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:621318 AgrOrtholog
BioCyc Gene G2FUF-45771 BioCyc
Ensembl Genes ENSRNOG00000007899 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010425.4 UniProtKB/TrEMBL
  ENSRNOT00000094942.1 UniProtKB/TrEMBL
  ENSRNOT00000105636.1 UniProtKB/TrEMBL
  ENSRNOT00000112936.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.70.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro MTERF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MTERF_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:85261 UniProtKB/Swiss-Prot
NCBI Gene 85261 ENTREZGENE
PANTHER PTHR15437 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSCRIPTION TERMINATION FACTOR 1, MITOCHONDRIAL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam mTERF UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Mterf1 PhenoGen
RatGTEx ENSRNOG00000007899 RatGTEx
SMART Mterf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6K274 ENTREZGENE, UniProtKB/TrEMBL
  G3V6Z9 ENTREZGENE, UniProtKB/TrEMBL
  MTEF1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-10 Mterf1  mitochondrial transcription termination factor 1  Mterf  mitochondrial transcription termination factor  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-22 Mterf  mitochondrial transcription termination factor  Mterf  mitochondrial transcription termination factor 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-01-20 Mterf  mitochondrial transcription termination factor 1    transcription termination factor, mitochondrial  Name updated 1299863 APPROVED
2002-08-07 Mterf  transcription termination factor, mitochondrial      Symbol and Name status set to provisional 70820 PROVISIONAL

RGD Curation Notes
Note Type Note Reference
gene_function binds to 3' end of 16S rRNA in mitochondria and terminates the transcription process 724422
gene_process binds to 3' end of 16S rRNA in mitochondria and terminates the transcription process 724422