Tspan33 (tetraspanin 33) - Rat Genome Database

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Gene: Tspan33 (tetraspanin 33) Rattus norvegicus
Analyze
Symbol: Tspan33
Name: tetraspanin 33
RGD ID: 1560915
Description: Predicted to enable enzyme binding activity. Predicted to be involved in pore complex assembly; protein localization to plasma membrane; and protein maturation. Predicted to be located in cell surface and tetraspanin-enriched microdomain. Predicted to be part of pore complex. Orthologous to human TSPAN33 (tetraspanin 33); INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC500065; RGD1560915; similar to Hypothetical protein MGC30714; tetraspanin-33
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,270,713 - 59,294,249 (+)NCBIGRCr8
mRatBN7.2458,305,378 - 58,330,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,305,437 - 58,328,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,288,970 - 63,312,495 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,205,135 - 59,228,660 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,607,026 - 57,630,551 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,981,283 - 57,005,866 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,981,283 - 57,004,792 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,748,444 - 56,771,956 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,584,840 - 56,608,349 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera453,411,852 - 53,435,312 (+)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(+)-schisandrin B  (EXP)
(1->4)-beta-D-glucan  (ISO)
1,2-dimethylhydrazine  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3-chloropropane-1,2-diol  (EXP)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
benzene  (ISO)
benzo[a]pyrene  (ISO)
bis(2-ethylhexyl) phthalate  (EXP,ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
butanal  (ISO)
cadmium atom  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
cyclosporin A  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP)
dichloroacetic acid  (ISO)
dorsomorphin  (ISO)
ethyl methanesulfonate  (ISO)
formaldehyde  (ISO)
genistein  (ISO)
gentamycin  (EXP)
indometacin  (ISO)
ketamine  (EXP)
leflunomide  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
paracetamol  (EXP,ISO)
pentanal  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
propanal  (ISO)
propiconazole  (ISO)
SB 431542  (ISO)
sunitinib  (ISO)
tetrachloromethane  (EXP)
thalidomide  (ISO)
thimerosal  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23035126   PMID:23091066   PMID:30463011  


Genomics

Comparative Map Data
Tspan33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,270,713 - 59,294,249 (+)NCBIGRCr8
mRatBN7.2458,305,378 - 58,330,013 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,305,437 - 58,328,940 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,288,970 - 63,312,495 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,205,135 - 59,228,660 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,607,026 - 57,630,551 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,981,283 - 57,005,866 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,981,283 - 57,004,792 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,748,444 - 56,771,956 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,584,840 - 56,608,349 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera453,411,852 - 53,435,312 (+)NCBICelera
Cytogenetic Map4q22NCBI
TSPAN33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387129,144,707 - 129,169,699 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7129,144,707 - 129,169,699 (+)EnsemblGRCh38hg38GRCh38
GRCh377128,784,712 - 128,809,540 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,571,948 - 128,595,907 (+)NCBINCBI36Build 36hg18NCBI36
Celera7123,581,313 - 123,606,255 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7123,145,967 - 123,170,905 (+)NCBIHuRef
CHM1_17128,718,191 - 128,743,131 (+)NCBICHM1_1
T2T-CHM13v2.07130,457,613 - 130,482,604 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27128,168,549 - 128,193,491 (+)NCBI
Tspan33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,694,213 - 29,718,557 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,694,221 - 29,718,558 (+)EnsemblGRCm39 Ensembl
GRCm38629,694,214 - 29,718,558 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,694,222 - 29,718,559 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,644,256 - 29,668,558 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,644,266 - 29,668,568 (+)NCBIMGSCv36mm8
Celera629,703,313 - 29,727,604 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Tspan33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,919,886 - 9,941,395 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554799,920,192 - 9,941,395 (+)NCBIChiLan1.0ChiLan1.0
TSPAN33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,950,469 - 165,979,415 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,960,612 - 17,989,661 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07121,097,244 - 121,125,582 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,620,456 - 133,648,787 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,620,452 - 133,648,787 (+)Ensemblpanpan1.1panPan2
TSPAN33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,558,105 - 7,577,466 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,558,975 - 7,578,330 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,245,451 - 7,264,585 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,323,961 - 7,343,156 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,324,167 - 7,343,417 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,529,066 - 7,548,225 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,270,992 - 7,290,125 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,416,021 - 7,435,204 (-)NCBIUU_Cfam_GSD_1.0
Tspan33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,803,544 - 25,825,613 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365795,935,287 - 5,958,268 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365795,935,308 - 5,958,193 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSPAN33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,493,613 - 19,514,361 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,493,610 - 19,514,361 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,563,185 - 20,583,910 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TSPAN33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,740,511 - 97,766,374 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,740,786 - 97,767,355 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660425,635,902 - 5,662,066 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tspan33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,058,827 - 7,083,367 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,058,827 - 7,083,345 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Tspan33
319 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:407
Count of miRNA genes:215
Interacting mature miRNAs:260
Transcripts:ENSRNOT00000010989
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 1 6 19 19 11 19 35 31 10
Low 2 33 38 22 8 22 8 11 39 4 31 11 8
Below cutoff 4

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000010989   ⟹   ENSRNOP00000010989
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,305,437 - 58,328,940 (+)Ensembl
Rnor_6.0 Ensembl456,981,283 - 57,004,792 (+)Ensembl
RefSeq Acc Id: NM_001109227   ⟹   NP_001102697
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,270,744 - 59,294,249 (+)NCBI
mRatBN7.2458,305,437 - 58,328,940 (+)NCBI
Rnor_6.0456,981,283 - 57,004,792 (+)NCBI
Rnor_5.0456,748,444 - 56,771,956 (+)NCBI
RGSC_v3.4456,584,840 - 56,608,349 (+)RGD
Celera453,411,852 - 53,435,312 (+)RGD
Sequence:
RefSeq Acc Id: XM_006236227   ⟹   XP_006236289
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,270,713 - 59,294,247 (+)NCBI
mRatBN7.2458,305,383 - 58,330,013 (+)NCBI
Rnor_6.0456,981,294 - 57,005,866 (+)NCBI
Rnor_5.0456,748,444 - 56,771,956 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039108118   ⟹   XP_038964046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,270,713 - 59,292,359 (+)NCBI
mRatBN7.2458,305,378 - 58,325,172 (+)NCBI
RefSeq Acc Id: XM_063286495   ⟹   XP_063142565
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,276,026 - 59,294,247 (+)NCBI
RefSeq Acc Id: XM_063286496   ⟹   XP_063142566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,276,026 - 59,294,247 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_001102697   ⟸   NM_001109227
- UniProtKB: D3Z967 (UniProtKB/TrEMBL),   A6IEE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236289   ⟸   XM_006236227
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSRNOP00000010989   ⟸   ENSRNOT00000010989
RefSeq Acc Id: XP_038964046   ⟸   XM_039108118
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063142565   ⟸   XM_063286495
- Peptide Label: isoform X2
RefSeq Acc Id: XP_063142566   ⟸   XM_063286496
- Peptide Label: isoform X3

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z967-F1-model_v2 AlphaFold D3Z967 1-283 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692929
Promoter ID:EPDNEW_R3454
Type:initiation region
Name:Tspan33_1
Description:tetraspanin 33
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0456,981,284 - 56,981,344EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1560915 AgrOrtholog
BioCyc Gene G2FUF-45385 BioCyc
Ensembl Genes ENSRNOG00000007900 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000010989 ENTREZGENE
  ENSRNOT00000010989.5 UniProtKB/TrEMBL
Gene3D-CATH 1.10.1450.10 UniProtKB/TrEMBL
InterPro Tetraspanin UniProtKB/TrEMBL
  Tetraspanin_EC2 UniProtKB/TrEMBL
  Tetraspanin_sub UniProtKB/TrEMBL
KEGG Report rno:500065 UniProtKB/TrEMBL
NCBI Gene 500065 ENTREZGENE
PANTHER PTHR19282 UniProtKB/TrEMBL
  TETRASPANIN-33 UniProtKB/TrEMBL
Pfam Tetraspannin UniProtKB/TrEMBL
PhenoGen Tspan33 PhenoGen
PIRSF Tetraspanin UniProtKB/TrEMBL
PRINTS TMFOUR UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007900 RatGTEx
Superfamily-SCOP Tetraspanin UniProtKB/TrEMBL
UniProt A6IEE5 ENTREZGENE, UniProtKB/TrEMBL
  D3Z967 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-28 Tspan33  tetraspanin 33  RGD1560915_predicted  similar to Hypothetical protein MGC30714 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1560915_predicted  similar to Hypothetical protein MGC30714 (predicted)  LOC500065  similar to Hypothetical protein MGC30714  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500065  similar to Hypothetical protein MGC30714      Symbol and Name status set to provisional 70820 PROVISIONAL