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Gene: Kdm7a (lysine demethylase 7A) Rattus norvegicus
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Symbol: Kdm7a
Name: lysine demethylase 7A
Description: Predicted to have histone demethylase activity; methylated histone binding activity; and transition metal ion binding activity. Predicted to be involved in histone lysine demethylation and positive regulation of transcription, DNA-templated. Predicted to localize to the nucleolus and nucleoplasm. Human ortholog(s) of this gene implicated in melanoma. Orthologous to human KDM7A (lysine demethylase 7A); PARTICIPATES IN histone modification pathway; INTERACTS WITH bisphenol A; valproic acid; (S)-nicotine (ortholog).
Type: protein-coding
RefSeq Status: MODEL
Also known as: Jhdm1d; jumonji C domain containing histone demethylase 1; LOC684297; lysine (K)-specific demethylase 7A; lysine-specific demethylase 7A; similar to PHD finger protein 8
Orthologs:
Homo sapiens (human) : KDM7A (lysine demethylase 7A)  HGNC  Alliance
Mus musculus (house mouse) : Kdm7a (lysine (K)-specific demethylase 7A)  MGI  Alliance
Chinchilla lanigera (long-tailed chinchilla) : Kdm7a (lysine demethylase 7A)
Pan paniscus (bonobo/pygmy chimpanzee) : KDM7A (lysine demethylase 7A)
Canis lupus familiaris (dog) : KDM7A (lysine demethylase 7A)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Kdm7a (lysine demethylase 7A)
Sus scrofa (pig) : KDM7A (lysine demethylase 7A)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.0466,915,603 - 66,957,971 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0466,720,232 - 66,786,800 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera462,912,406 - 62,952,948 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
References - curated
References - uncurated

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)

Expression

RNA-SEQ Expression

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants (Rnor 6.0)

Additional Information

External Database Links
Nomenclature History
 
More on Kdm7a
Alliance Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1592650
Created: 2006-11-20
Species: Rattus norvegicus
Last Modified: 2019-10-16
Status: ACTIVE



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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.