Ahcyl2 (adenosylhomocysteinase-like 2) - Rat Genome Database

Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Ahcyl2 (adenosylhomocysteinase-like 2) Rattus norvegicus
Analyze
Symbol: Ahcyl2
Name: adenosylhomocysteinase-like 2
RGD ID: 1564895
Description: Predicted to be involved in S-adenosylmethionine cycle. Predicted to be located in intracellular membrane-bounded organelle and neuron projection. Predicted to be active in cytosol. Orthologous to human AHCYL2 (adenosylhomocysteinase like 2); PARTICIPATES IN cysteine and methionine metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: adenosylhomocysteinase 3; LOC312192; putative adenosylhomocysteinase 3; RGD1564895; S-adenosylhomocysteine hydrolase-like 2; similar to RIKEN cDNA 4631427C17
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2458,381,290 - 58,531,061 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,381,218 - 58,531,060 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,360,156 - 63,508,894 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0459,276,324 - 59,425,048 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0457,678,200 - 57,826,928 (+)NCBIRnor_WKY
Rnor_6.0457,050,241 - 57,199,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl457,050,214 - 57,199,900 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,817,402 - 56,967,031 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,654,054 - 56,801,641 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera453,483,136 - 53,632,390 (+)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. GOA pipeline RGD automated data pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:19220705  


Genomics

Comparative Map Data
Ahcyl2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2458,381,290 - 58,531,061 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,381,218 - 58,531,060 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx463,360,156 - 63,508,894 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0459,276,324 - 59,425,048 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0457,678,200 - 57,826,928 (+)NCBIRnor_WKY
Rnor_6.0457,050,241 - 57,199,870 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl457,050,214 - 57,199,900 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0456,817,402 - 56,967,031 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4456,654,054 - 56,801,641 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera453,483,136 - 53,632,390 (+)NCBICelera
Cytogenetic Map4q22NCBI
AHCYL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387129,225,030 - 129,430,211 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7129,225,030 - 129,430,211 (+)EnsemblGRCh38hg38GRCh38
GRCh377128,864,871 - 129,070,052 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,652,100 - 128,857,288 (+)NCBINCBI36Build 36hg18NCBI36
Celera7123,661,585 - 123,866,795 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7123,225,638 - 123,431,372 (+)NCBIHuRef
CHM1_17128,798,444 - 129,003,618 (+)NCBICHM1_1
T2T-CHM13v2.07130,537,959 - 130,743,182 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27128,248,814 - 128,454,023 (+)NCBI
Ahcyl2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,768,378 - 29,912,309 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,768,010 - 29,912,309 (+)EnsemblGRCm39 Ensembl
GRCm38629,768,379 - 29,912,310 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,768,011 - 29,912,310 (+)EnsemblGRCm38mm10GRCm38
MGSCv37629,718,443 - 29,862,310 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36629,718,543 - 29,862,319 (+)NCBIMGSCv36mm8
Celera629,779,462 - 29,923,287 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
Ahcyl2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495547910,008,891 - 10,214,868 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495547910,008,814 - 10,211,370 (+)NCBIChiLan1.0ChiLan1.0
AHCYL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.17133,845,851 - 133,909,907 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,704,551 - 133,909,907 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07121,180,259 - 121,387,972 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
AHCYL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,347,173 - 7,509,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,350,102 - 7,509,157 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,035,306 - 7,196,500 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0147,113,464 - 7,274,725 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,111,486 - 7,275,745 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,318,654 - 7,480,064 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,060,736 - 7,221,924 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,205,378 - 7,366,837 (-)NCBIUU_Cfam_GSD_1.0
Ahcyl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,564,830 - 25,752,001 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365795,697,427 - 5,884,587 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AHCYL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,260,228 - 19,441,883 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11819,260,226 - 19,441,839 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,331,006 - 20,511,345 (-)NCBISscrofa10.2Sscrofa10.2susScr3
AHCYL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,823,901 - 98,033,724 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,971,154 - 98,033,738 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660425,370,523 - 5,578,808 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ahcyl2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247836,792,215 - 7,003,698 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247836,792,366 - 7,003,642 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ahcyl2
553 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:635
Count of miRNA genes:265
Interacting mature miRNAs:347
Transcripts:ENSRNOT00000025165
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)457114432102114432Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat

Markers in Region
D4Got35  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,489,833 - 58,490,031 (+)MAPPERmRatBN7.2
Rnor_6.0457,158,648 - 57,158,845NCBIRnor6.0
Rnor_5.0456,925,809 - 56,926,006UniSTSRnor5.0
RGSC_v3.4456,762,563 - 56,762,761RGDRGSC3.4
RGSC_v3.4456,762,564 - 56,762,761UniSTSRGSC3.4
RGSC_v3.1457,038,694 - 57,038,891RGD
Celera453,591,161 - 53,591,358UniSTS
RH 3.4 Map4334.4UniSTS
RH 3.4 Map4334.4RGD
RH 2.0 Map4409.8RGD
Cytogenetic Map4q22UniSTS
D4Got39  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,432,133 - 58,432,232 (+)MAPPERmRatBN7.2
Rnor_6.0457,101,077 - 57,101,175NCBIRnor6.0
Rnor_5.0456,868,238 - 56,868,336UniSTSRnor5.0
RGSC_v3.4456,704,868 - 56,704,967RGDRGSC3.4
RGSC_v3.4456,704,869 - 56,704,967UniSTSRGSC3.4
RGSC_v3.1456,980,168 - 56,980,266RGD
Celera453,533,780 - 53,533,878UniSTS
RH 3.4 Map4305.0UniSTS
RH 3.4 Map4305.0RGD
RH 2.0 Map4430.9RGD
Cytogenetic Map4q22UniSTS
D4Wox37  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,395,151 - 58,395,257 (+)MAPPERmRatBN7.2
Rnor_6.0457,064,098 - 57,064,203NCBIRnor6.0
Rnor_5.0456,831,259 - 56,831,364UniSTSRnor5.0
RGSC_v3.4456,667,890 - 56,667,995UniSTSRGSC3.4
Celera453,496,801 - 53,496,906UniSTS
Cytogenetic Map4q22UniSTS
D7S2964  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,527,868 - 58,527,962 (+)MAPPERmRatBN7.2
Rnor_6.0457,196,684 - 57,196,777NCBIRnor6.0
Rnor_6.01939,462,574 - 39,462,641NCBIRnor6.0
Rnor_5.0456,963,845 - 56,963,938UniSTSRnor5.0
Rnor_5.01950,326,444 - 50,326,511UniSTSRnor5.0
RGSC_v3.4456,800,403 - 56,800,496UniSTSRGSC3.4
Celera453,629,198 - 53,629,291UniSTS
Cytogenetic Map4q22UniSTS
AU049056  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,465,634 - 58,465,781 (+)MAPPERmRatBN7.2
Rnor_6.0457,134,452 - 57,134,598NCBIRnor6.0
Rnor_5.0456,901,613 - 56,901,759UniSTSRnor5.0
RGSC_v3.4456,738,368 - 56,738,514UniSTSRGSC3.4
Celera453,567,004 - 53,567,150UniSTS
Cytogenetic Map4q22UniSTS
IB809  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,530,654 - 58,530,836 (+)MAPPERmRatBN7.2
Rnor_6.0457,199,464 - 57,199,645NCBIRnor6.0
Rnor_5.0456,966,625 - 56,966,806UniSTSRnor5.0
RGSC_v3.4456,803,189 - 56,803,370UniSTSRGSC3.4
Celera453,631,984 - 53,632,165UniSTS
Cytogenetic Map4q22UniSTS
RH142399  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,530,601 - 58,530,751 (+)MAPPERmRatBN7.2
Rnor_6.0457,199,411 - 57,199,560NCBIRnor6.0
Rnor_5.0456,966,572 - 56,966,721UniSTSRnor5.0
RGSC_v3.4456,803,136 - 56,803,285UniSTSRGSC3.4
Celera453,631,931 - 53,632,080UniSTS
RH 3.4 Map4305.3UniSTS
Cytogenetic Map4q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 12 14 74 35 35 10
Low 43 45 41 5 41 8 11 6 1 8
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000025165   ⟹   ENSRNOP00000025165
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,381,218 - 58,531,060 (+)Ensembl
Rnor_6.0 Ensembl457,050,214 - 57,199,900 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000100143   ⟹   ENSRNOP00000091272
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,470,975 - 58,531,060 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102598   ⟹   ENSRNOP00000078402
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,486,863 - 58,527,016 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000109374   ⟹   ENSRNOP00000087181
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,476,657 - 58,531,060 (+)Ensembl
RefSeq Acc Id: NM_001173510   ⟹   NP_001166981
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,381,290 - 58,531,061 (+)NCBI
Rnor_6.0457,050,241 - 57,199,870 (+)NCBI
Rnor_5.0456,817,402 - 56,967,031 (+)NCBI
Celera453,483,136 - 53,632,390 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006236194   ⟹   XP_006236256
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,476,336 - 58,531,061 (+)NCBI
Rnor_6.0457,145,056 - 57,199,870 (+)NCBI
Rnor_5.0456,817,402 - 56,967,031 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008762771   ⟹   XP_008760993
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2458,470,791 - 58,531,061 (+)NCBI
Rnor_6.0457,139,367 - 57,199,870 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001166981 (Get FASTA)   NCBI Sequence Viewer  
  XP_006236256 (Get FASTA)   NCBI Sequence Viewer  
  XP_008760993 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15234 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: NP_001166981   ⟸   NM_001173510
- UniProtKB: D3ZWL6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236256   ⟸   XM_006236194
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_008760993   ⟸   XM_008762771
- Peptide Label: isoform X1
- UniProtKB: A0A8I6ABA9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000025165   ⟸   ENSRNOT00000025165
RefSeq Acc Id: ENSRNOP00000078402   ⟸   ENSRNOT00000102598
RefSeq Acc Id: ENSRNOP00000087181   ⟸   ENSRNOT00000109374
RefSeq Acc Id: ENSRNOP00000091272   ⟸   ENSRNOT00000100143
Protein Domains
S-adenosyl-L-homocysteine hydrolase NAD binding

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZWL6-F1-model_v2 AlphaFold D3ZWL6 1-612 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692930
Promoter ID:EPDNEW_R3455
Type:initiation region
Name:Ahcyl2_1
Description:adenosylhomocysteinase-like 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0457,050,228 - 57,050,288EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564895 AgrOrtholog
BioCyc Gene G2FUF-45379 BioCyc
BioCyc Pathway METHIONINE-DEG1-PWY [L-methionine degradation I (to L-homocysteine)] BioCyc
  PWY-5041 [S-adenosyl-L-methionine salvage II] BioCyc
Ensembl Genes ENSRNOG00000039300 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000025165 ENTREZGENE
  ENSRNOP00000025165.8 UniProtKB/TrEMBL
  ENSRNOP00000078402.1 UniProtKB/TrEMBL
  ENSRNOP00000087181 ENTREZGENE
  ENSRNOP00000087181.1 UniProtKB/TrEMBL
  ENSRNOP00000091272 ENTREZGENE
  ENSRNOP00000091272.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025165 ENTREZGENE
  ENSRNOT00000025165.8 UniProtKB/TrEMBL
  ENSRNOT00000100143 ENTREZGENE
  ENSRNOT00000100143.1 UniProtKB/TrEMBL
  ENSRNOT00000102598.1 UniProtKB/TrEMBL
  ENSRNOT00000109374 ENTREZGENE
  ENSRNOT00000109374.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.1480 UniProtKB/TrEMBL
  NAD(P)-binding Rossmann-like Domain UniProtKB/TrEMBL
InterPro Adenosylhomocyst_ase-like_sf UniProtKB/TrEMBL
  Ado_hCys_hydrolase_NAD-bd UniProtKB/TrEMBL
  NAD(P)-bd_dom_sf UniProtKB/TrEMBL
  S-Ado-L-homoCys_hydrolase UniProtKB/TrEMBL
  S-Ado-L-homoCys_hydrolase_CS UniProtKB/TrEMBL
KEGG Report rno:312192 UniProtKB/TrEMBL
NCBI Gene 312192 ENTREZGENE
PANTHER Ad_hcy_hydrolase UniProtKB/TrEMBL
  ADENOSYLHOMOCYSTEINASE 3 UniProtKB/TrEMBL
Pfam AdoHcyase UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/TrEMBL
PhenoGen Ahcyl2 PhenoGen
PIRSF Ad_hcy_hydrolase UniProtKB/TrEMBL
PROSITE ADOHCYASE_1 UniProtKB/TrEMBL
  ADOHCYASE_2 UniProtKB/TrEMBL
SMART AdoHcyase UniProtKB/TrEMBL
  AdoHcyase_NAD UniProtKB/TrEMBL
Superfamily-SCOP Formate/glycerate dehydrogenase catalytic domain-like UniProtKB/TrEMBL
  SSF51735 UniProtKB/TrEMBL
TIGRFAMs ahcY UniProtKB/TrEMBL
UniProt A0A8I5ZKU2_RAT UniProtKB/TrEMBL
  A0A8I6A7Z2_RAT UniProtKB/TrEMBL
  A0A8I6ABA9 ENTREZGENE, UniProtKB/TrEMBL
  D3ZWL6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-09-17 Ahcyl2  adenosylhomocysteinase-like 2  Ahcyl2  S-adenosylhomocysteine hydrolase-like 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Ahcyl2  S-adenosylhomocysteine hydrolase-like 2  RGD1564895_predicted  similar to RIKEN cDNA 4631427C17 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564895_predicted  similar to RIKEN cDNA 4631427C17 (predicted)  LOC312192  similar to RIKEN cDNA 4631427C17  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC312192  similar to RIKEN cDNA 4631427C17      Symbol and Name status set to provisional 70820 PROVISIONAL