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Gene: Ahcyl2 (adenosylhomocysteinase-like 2) Rattus norvegicus

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Symbol:

Ahcyl2

Name:

adenosylhomocysteinase-like 2

RGD ID:

1564895

Description:

Predicted to be involved in S-adenosylmethionine cycle. Predicted to be located in intracellular membrane-bounded organelle and neuron projection. Predicted to be active in cytosol. Orthologous to human AHCYL2 (adenosylhomocysteinase like 2); PARTICIPATES IN cysteine and methionine metabolic pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

adenosylhomocysteinase 3; LOC312192; putative adenosylhomocysteinase 3; RGD1564895; S-adenosylhomocysteine hydrolase-like 2; similar to RIKEN cDNA 4631427C17

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	AHCYL2 (adenosylhomocysteinase like 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ahcyl2 (S-adenosylhomocysteine hydrolase-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ahcyl2 (adenosylhomocysteinase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	AHCYL2 (adenosylhomocysteinase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	AHCYL2 (adenosylhomocysteinase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ahcyl2 (adenosylhomocysteinase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	AHCYL2 (adenosylhomocysteinase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	AHCYL2 (adenosylhomocysteinase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ahcyl2 (adenosylhomocysteinase like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	AHCYL1 (adenosylhomocysteinase like 1)	HGNC	OrthoDB
Homo sapiens (human):	GIPC1 (GIPC PDZ domain containing family member 1)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Ahcyl2 (S-adenosylhomocysteine hydrolase-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	AHCYL2 (adenosylhomocysteinase like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ahcyl2 (adenosylhomocysteinase-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	zgc:158222	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	AhcyL1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	AhcyL2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ahcyl2	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	59,348,747 - 59,498,503 (+)	NCBI		GRCr8
mRatBN7.2	4	58,381,290 - 58,531,061 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	58,381,218 - 58,531,060 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	63,360,156 - 63,508,894 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	59,276,324 - 59,425,048 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	57,678,200 - 57,826,928 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	57,050,241 - 57,199,870 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	57,050,214 - 57,199,900 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	56,817,402 - 56,967,031 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	56,654,054 - 56,801,641 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	53,483,136 - 53,632,390 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

pleomorphic xanthoastrocytoma (ISO)

Prostatic Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (ISO)

3,3',5,5'-tetrabromobisphenol A (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

bisphenol A (EXP,ISO)

Brodifacoum (EXP)

carbon nanotube (ISO)

chlorpyrifos (ISO)

chrysene (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

decabromodiphenyl ether (ISO)

diarsenic trioxide (ISO)

dibenz[a,h]anthracene (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

dizocilpine maleate (EXP)

doxorubicin (ISO)

gentamycin (EXP)

GW 4064 (ISO)

isoflurane (ISO)

ivermectin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

methylmercury chloride (ISO)

N,N-diethyl-m-toluamide (EXP)

ozone (ISO)

paracetamol (EXP)

permethrin (EXP)

pirinixic acid (ISO)

propiconazole (EXP)

resveratrol (ISO)

SB 431542 (ISO)

sevoflurane (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

temozolomide (ISO)

tetrachloromethane (EXP)

tetraphene (ISO)

thioacetamide (EXP)

triptonide (ISO)

tunicamycin (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

one-carbon metabolic process (IEA)

S-adenosylmethionine cycle (IBA)

Cellular Component

cytosol (IBA,IEA,ISO)

neuron projection (IEA,ISO)

Molecular Function

adenosylhomocysteinase activity (IBA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

cysteine and methionine metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:19220705

Genomics

Comparative Map Data

Ahcyl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	59,348,747 - 59,498,503 (+)	NCBI		GRCr8
mRatBN7.2	4	58,381,290 - 58,531,061 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	58,381,218 - 58,531,060 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	63,360,156 - 63,508,894 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	59,276,324 - 59,425,048 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	57,678,200 - 57,826,928 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	57,050,241 - 57,199,870 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	57,050,214 - 57,199,900 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	56,817,402 - 56,967,031 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	56,654,054 - 56,801,641 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	53,483,136 - 53,632,390 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

AHCYL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	129,225,030 - 129,430,211 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	129,225,030 - 129,430,211 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	7	128,864,871 - 129,070,052 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	128,652,100 - 128,857,288 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	7	123,661,585 - 123,866,795 (+)	NCBI		Celera
Cytogenetic Map	7	q32.1	NCBI
HuRef	7	123,225,638 - 123,431,372 (+)	NCBI		HuRef
CHM1_1	7	128,798,444 - 129,003,618 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	130,537,959 - 130,743,182 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	128,248,814 - 128,454,023 (+)	NCBI

Ahcyl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	29,768,378 - 29,912,309 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	29,768,010 - 29,912,309 (+)	Ensembl		GRCm39 Ensembl
GRCm38	6	29,768,379 - 29,912,310 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	29,768,011 - 29,912,310 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	29,718,443 - 29,862,310 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	29,718,543 - 29,862,319 (+)	NCBI		MGSCv36	mm8
Celera	6	29,779,462 - 29,923,287 (+)	NCBI		Celera
Cytogenetic Map	6	A3.3	NCBI
cM Map	6	12.36	NCBI

Ahcyl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955479	10,008,891 - 10,214,868 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955479	10,008,814 - 10,211,370 (+)	NCBI	ChiLan1.0	ChiLan1.0

AHCYL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	166,035,491 - 166,243,156 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	18,045,740 - 18,253,401 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	121,180,259 - 121,387,972 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	133,845,851 - 133,909,907 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	133,704,551 - 133,909,907 (+)	Ensembl	panpan1.1		panPan2

AHCYL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	7,347,173 - 7,509,113 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	7,350,102 - 7,509,157 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	7,035,306 - 7,196,500 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	7,113,464 - 7,274,725 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	7,111,486 - 7,275,745 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	7,318,654 - 7,480,064 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	7,060,736 - 7,221,924 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	7,205,378 - 7,366,837 (-)	NCBI		UU_Cfam_GSD_1.0

Ahcyl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	25,564,830 - 25,752,001 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936579	5,697,427 - 5,884,587 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

AHCYL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	19,260,228 - 19,441,883 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	18	19,260,226 - 19,441,839 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	20,331,006 - 20,511,345 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

AHCYL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	97,823,901 - 98,033,724 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	97,971,154 - 98,033,738 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666042	5,370,523 - 5,578,808 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ahcyl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	6,792,215 - 7,003,698 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624783	6,792,366 - 7,003,642 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ahcyl2
601 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	635
Count of miRNA genes:	265
Interacting mature miRNAs:	347
Transcripts:	ENSRNOT00000025165
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	14678065	59678065	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	56647776	78882945	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	38465774	146803430	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	40433388	85433388	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	43457976	88457976	Rat
5685009	Bmd86	Bone mineral density QTL 86	3.7		tibia mineral mass (VT:1000283)	bone mineral density (CMO:0001226)	4	56647776	78882945	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	26775591	168368347	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	39524264	74726312	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
634311	Sach7	Saccharin preference QTL 7			taste sensitivity trait (VT:0001986)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	57114432	81266970	Rat
1358363	Sradr3	Stress Responsive Adrenal Weight QTL 3	6.19		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	57486946	102486946	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	10814170	91360527	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	45456990	146803430	Rat
61336	Bp21	Blood pressure QTL 21	4.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	57114705	78881294	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	17933508	62933508	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	36303261	103194984	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	44463908	148090542	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	26907285	75585128	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5214602	146446691	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	change in body weight to body weight ratio (CMO:0002216)	4	34430484	82490359	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	39505275	73892441	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	40433414	85433414	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	21333343	62278020	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	29494195	81006281	Rat
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	5214602	78882945	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	44463720	155883716	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	17946999	62946999	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	26907285	75585128	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	34430484	82490359	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	58432133	92991462	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5218294	65958103	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	44463908	148090542	Rat
1641833	Alc21	Alcohol consumption QTL 21	8.6	0.0001	drinking behavior trait (VT:0001422)	ethanol drink intake rate (CMO:0001407)	4	56698790	126192555	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	50119848	146803430	Rat
631546	Bp86	Blood pressure QTL 86	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	57114432	91360801	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	39524264	116179656	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	56647873	149491524	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	32583980	114627242	Rat
4889969	Bss96	Bone structure and strength QTL 96	4.9		tibia size trait (VT:0100001)	tibia cortical bone volume (CMO:0001725)	4	56647776	78882945	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	11320076	180699135	Rat
4889972	Bss97	Bone structure and strength QTL 97	5.6		tibia size trait (VT:0100001)	tibia total bone volume (CMO:0001724)	4	56647776	78882945	Rat

Markers in Region

D4Got35

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	58,489,833 - 58,490,031 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	57,158,648 - 57,158,845	NCBI	Rnor6.0
Rnor_5.0	4	56,925,809 - 56,926,006	UniSTS	Rnor5.0
RGSC_v3.4	4	56,762,564 - 56,762,761	UniSTS	RGSC3.4
RGSC_v3.4	4	56,762,563 - 56,762,761	RGD	RGSC3.4
RGSC_v3.1	4	57,038,694 - 57,038,891	RGD
Celera	4	53,591,161 - 53,591,358	UniSTS
RH 3.4 Map	4	334.4	UniSTS
RH 3.4 Map	4	334.4	RGD
RH 2.0 Map	4	409.8	RGD
Cytogenetic Map	4	q22	UniSTS

D4Got39

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	58,432,133 - 58,432,232 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	57,101,077 - 57,101,175	NCBI	Rnor6.0
Rnor_5.0	4	56,868,238 - 56,868,336	UniSTS	Rnor5.0
RGSC_v3.4	4	56,704,869 - 56,704,967	UniSTS	RGSC3.4
RGSC_v3.4	4	56,704,868 - 56,704,967	RGD	RGSC3.4
RGSC_v3.1	4	56,980,168 - 56,980,266	RGD
Celera	4	53,533,780 - 53,533,878	UniSTS
RH 3.4 Map	4	305.0	UniSTS
RH 3.4 Map	4	305.0	RGD
RH 2.0 Map	4	430.9	RGD
Cytogenetic Map	4	q22	UniSTS

D4Wox37

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	58,395,151 - 58,395,257 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	57,064,098 - 57,064,203	NCBI	Rnor6.0
Rnor_5.0	4	56,831,259 - 56,831,364	UniSTS	Rnor5.0
RGSC_v3.4	4	56,667,890 - 56,667,995	UniSTS	RGSC3.4
Celera	4	53,496,801 - 53,496,906	UniSTS
Cytogenetic Map	4	q22	UniSTS

D7S2964

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	58,527,868 - 58,527,962 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	57,196,684 - 57,196,777	NCBI	Rnor6.0
Rnor_6.0	19	39,462,574 - 39,462,641	NCBI	Rnor6.0
Rnor_5.0	4	56,963,845 - 56,963,938	UniSTS	Rnor5.0
Rnor_5.0	19	50,326,444 - 50,326,511	UniSTS	Rnor5.0
RGSC_v3.4	4	56,800,403 - 56,800,496	UniSTS	RGSC3.4
Celera	4	53,629,198 - 53,629,291	UniSTS
Cytogenetic Map	4	q22	UniSTS

AU049056

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	58,465,634 - 58,465,781 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	57,134,452 - 57,134,598	NCBI	Rnor6.0
Rnor_5.0	4	56,901,613 - 56,901,759	UniSTS	Rnor5.0
RGSC_v3.4	4	56,738,368 - 56,738,514	UniSTS	RGSC3.4
Celera	4	53,567,004 - 53,567,150	UniSTS
Cytogenetic Map	4	q22	UniSTS

IB809

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	58,530,654 - 58,530,836 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	57,199,464 - 57,199,645	NCBI	Rnor6.0
Rnor_5.0	4	56,966,625 - 56,966,806	UniSTS	Rnor5.0
RGSC_v3.4	4	56,803,189 - 56,803,370	UniSTS	RGSC3.4
Celera	4	53,631,984 - 53,632,165	UniSTS
Cytogenetic Map	4	q22	UniSTS

RH142399

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	58,530,601 - 58,530,751 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	57,199,411 - 57,199,560	NCBI	Rnor6.0
Rnor_5.0	4	56,966,572 - 56,966,721	UniSTS	Rnor5.0
RGSC_v3.4	4	56,803,136 - 56,803,285	UniSTS	RGSC3.4
Celera	4	53,631,931 - 53,632,080	UniSTS
RH 3.4 Map	4	305.3	UniSTS
Cytogenetic Map	4	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001173510	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236193	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236194	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762771	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063285981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC107356	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC119382	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BQ781566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CB713115	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CV113234	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM059920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FN804654	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025165 ⟹ ENSRNOP00000025165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	58,381,218 - 58,531,060 (+)	Ensembl
Rnor_6.0 Ensembl	4	57,050,214 - 57,199,900 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000100143 ⟹ ENSRNOP00000091272

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	58,470,975 - 58,531,060 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102598 ⟹ ENSRNOP00000078402

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	58,486,863 - 58,527,016 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109374 ⟹ ENSRNOP00000087181

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	58,476,657 - 58,531,060 (+)	Ensembl

RefSeq Acc Id:

NM_001173510 ⟹ NP_001166981

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	59,348,747 - 59,498,503 (+)	NCBI
mRatBN7.2	4	58,381,290 - 58,531,061 (+)	NCBI
Rnor_6.0	4	57,050,241 - 57,199,870 (+)	NCBI
Rnor_5.0	4	56,817,402 - 56,967,031 (+)	NCBI
Celera	4	53,483,136 - 53,632,390 (+)	NCBI

Sequence:

show sequence

GCGGTTGCAGTGGAGGCGGTGATGTCGGTGCAGGTTGTGTCAGCAGCGGCTGCCGCCAAGGTGC
CTGAGGTGGAGCTGAAGGATCTGAGCCCCTCTGAGGCGGAGCCTCAGTTAGGACTGAGCACGGC
GACCGTGGGCGCCATGGTACCCCCAGCGGGTGGCGGGGACCCAGAGGCTCCAGCTCCAGCTCCC
GCGGCAGAGCGGCCCCCGGCCCCTGGCCCGGGCTCGGGGCCCACCGCGGCTCTCAGCCCTGCGG
CAGGGAAGGTCCCTCAAGCGTCGGCCATGAAGCGGAGCGACCCTCATCACCAGCACCAGCGGCA
TCGCGACGGCGGCGAGGCCCTGGTCAGCCCCGACGGCACGGTCACCGAGGCGCCGCGCACGGTC
AAGAAGATTCAGTTTGCTGACCAGAAGCAGGAATTCAACAAACGTCCCACCAAAATTGGACGTC
GCTCTTTGTCTCGTTCCATCTCTCAGTCATCTACTGACAGCTACAGCTCAGCTGCCTCATACAC
AGATAGCTCTGACGATGAAACATCCCCCAGGGACAAGCAGCAAAAGAACTCTAAGGGGAGTAGC
GACTTCTGTGTCAAGAACATCAAACAAGCAGAGTTTGGACGCAGAGAGATTGAAATTGCTGAGC
AAGAGATGCCTGCCTTGATGGCTTTAAGGAAGAGAGCCCAAGGAGAAAAGCCTTTGGCTGGAGC
CAAAATCGTGGGTTGTACGCACATCACTGCTCAGACGGCTGTACTTATGGAGACTCTGGGTGCT
CTGGGGGCACAGTGCCGATGGGCTGCCTGCAACATCTACTCCACTCTCAATGAAGTGGCTGCTG
CTCTCGCAGAAAGTGGGTTTCCCGTCTTTGCCTGGAAAGGAGAGTCAGAAGATGACTTTTGGTG
GTGCATTGACAGATGCGTGAATGTGGAAGGTTGGCAGCCAAACATGATCTTGGATGATGGAGGA
GATCTTACTCACTGGATTTATAAAAAGTATCCCAACATGTTTAAGAAAATCAAAGGCATAGTTG
AGGAGAGTGTTACTGGAGTCCATAGGCTGTACCAACTGTCCAAAGCTGGGAAGCTGTGTGTTCC
AGCCATGAACGTCAATGACTCAGTCACTAAACAGAAATTTGATAACCTCTACTGTTGCCGTGAA
TCTATCCTTGACGGACTTAAAAGGACAACAGATATGATGTTTGGTGGAAAGCAAGTGGTGGTCT
GTGGCTATGGAGAGGTAGGAAAGGGGTGCTGTGCTGCTCTGAAAGCCATGGGTTCCGTCGTGTA
CGTAACTGAAATTGATCCCATCTGTGCCCTGCAAGCCTGTATGGATGGATTTCGACTAGTGAAG
CTAAATGAAGTCATCCGGCAAGTGGACATTGTTATTACTTGTACAGGGAACAAGAACGTGGTAA
CCAGAGAGCACTTGGACCGTATGAAGAATAGCTGCATCGTTTGTAACATGGGACATTCCAACAC
TGAGATTGATGTGGCCAGCCTGCGGACCCCAGAACTGACCTGGGAGAGAGTAAGATCCCAAGTT
GACCATGTGATATGGCCTGATGGCAAGAGGATAGTACTGCTGGCAGAGGGCCGTCTGCTGAATC
TCAGCTGCTCCACAGTGCCTACCTTTGTGCTCTCAATCACCGCTACCACTCAGGCTCTCGCCTT
GATAGAACTTTACAACGCTCCTGAGGGTCGCTATAAGCAAGATGTGTACCTGCTGCCCAAGAAG
ATGGATGAGTATGTGGCAAGCCTACACCTGCCCACCTTTGATGCCCACCTGACAGAGCTGACAG
ACGAGCAAGCCAAGTATCTGGGACTCAACAAGAATGGACCCTTCAAGCCTAATTACTACAGGTA
TTAAGTTCCTGTAATGCAAACCAGAAGACATGTTAAGGAATAGAACCAAGCCTTTTCTCCACTA
CTATCCAAGGAAGAACCCAGCAAGCTGCTTCTCCAATCAGAGCTGCCCGCCGTGCTCATCCTAT
GTGTTAGGTTATTTATTTATTAAACTCTAAAGTCCTGTGCCTGTAGCCTTGGCCCAGAGTGTGG
TTACTACTCCTGGGGCCGTGAGAGCCACAGAGGACAGGCTGAGGAAGGAAAGAAATGGGCCAAC
CATTCCTAGTGCATCATTCGCATTATTGCCCATTAGTGGAGTCCTCAGCGATGGCCATTTTTCT
TTCCAGGCTCAGGAGTTAGTTCAGGGATGCCAGACTCCTTGTTACTTAGGGTTTTCTGGAATAA
ATTTCAGCAGCTGCCTTTCTCAAAGCTTTGGTCCTTTCCCAGGTGAGGCCTTTTGGAAGCCACT
GAATTAACAAGGCCTGAATCCACAGCCTTGATAGTTACTGTCACTGCCTTCCTTACAAAAAGGC
TGGTGAGGCAGGAGTGGTAAGGTCTTGTAAGCTGCACCAAGAACTCAGCTGTGCCTGTATCCGT
GCCTACTGGGACTTCTTCTCTTACCCAGGACTCCTTTCTTCTCCTTGAATACTATATCCATTTC
AATGCTTTCTGTTTCTAAGAGGGTTGTGACTCCACGATCTTAACAGCTCTGCTGTTGGCCAGGC
ATTTGTTTTGCTTTCTAACCCTACTAAACTCTGCTCAGGAAGTAGCCAGCTCCACTGGGACCCA
TAGTTCTGCTTCCTTCCCATTTAACTGGACTGTTTCCTAGGAGGCCCCCCTAACTGGCACTGTC
AGAGGAGAGCCCCTTGTGGACAGTGCTTCTGTTGTTGCCTGAAATGGCCTCTGGAGCTGAGTCG
GCAAAAGTCTTTTCCAGGAAAGACTTTGGAGCTGGGCTTCGGAAGACAGGAGACTGTAATGTGT
ATCCAGATGATGAAACCTAGTTTGAGGTCTGGAGGTTAGCTCAGTGGTAGAGCCCTTGCCTGGC
ATGGATAAGGCTGTGTGCTCGATCATTGGGAACTCGGGAAAGGGATGGGCACTAGTTTGAACCT
CATCAGACATCCATCCCTTTGGCTGTTGGCCGTGGTGAAAGTGAGATCTGCAATCTGATAGCTT
ATCTTTCTTTGCTGCTGCTGCATTGTTATGATCTGGCCCCTCTGTTTAAGGATTCTGTTTCAGA
GAGTTTCTTAAGTAACTCCAGCATTATAAAATAGTAATGTAAACAGTGTGAAGTTTCTCATTCT
ACCCAGGAGTTGGATTTTCTTTGGAGATGGACTGAACAGTTTCAAGGTTTCCACTGGGATCAGT
TGGTTTCAAGAATTAAAACCTGGAGTGACCCTAGGAATCTTGAGCTGAATGAGTCCCTCTCATG
CCCCCCTATTTAGAAGTCTCCAGTTTGTTTCCCATGTCTCTCTTACATTGTTCTGCTGTAAAGT
CTCAAGATCAAGGTCATTCAAACAGAGGACAGCCAGAATCACTAAAATCTTCAACTAGATCTTC
TCCCCTGGCTACACCATCTCCACTGTCTCTTGGTGTTTATGTGTGCCCCGGAAGCTAGTCTGGA
AGTGTCCTTATTTTCTAAGCTAGGGAAACAGAACTGGGTAAGTGGCTGTTTACCTTATGAAATG
GTATACATTCCAGCTCACCCCAGAAGATGTACTCTAAACAGGGCATGTCTGTGGCTGTATTCTG
TTGTGCAAGGAAGATCACAAACACTGAAGAGTTCACCAAGATAGTCAGTCCTGATTTGTGTGTG
AATAGAATGCTCACTCTCCCACTCCCACCCCGTGTTGGTTTTTTGTTATTGTTGTTGGGGTTTG
TTGTTATTTTGAGATAGTCTCACTCTGTAACCCAGGCTGGACTCAAAGTCATGGCAGTCCTCCT
GCCTTGGCCTCCTGAGGCCATGTGCTACCGTGCCTGGCCTCTTAATTGGATCTGTTTAGCAAAG
ATTCATATCTCCGTGCCTCATCTCCAGAGCAGATTCCATTAGGCAGATATCTGGCTAGGGACAC
CCAGGTCATAACTTGGTGATTTTTTGCAAAGTCTTGCTCTCTACAGAGCTTCCTCTGGCTGGTA
CTTACACACTACACTATGCCACACCATAGAGAAGAGATCTGCTCAAAAAAAAAAAAAAGCCATG
TGGGTTTCTAAGTTAAGTTGCACCTGGCTGCCCATTGTGAGGTATCTGCCTGTGAGTTGCAGAT
GACATCTGTTCCCTTTTCTCTGGAGACCTCTTTGTCATCAACCATTAAGAAAATAGCCAGAAAT
AGGGATATAAGTCAGTGATAGGACACTTGATTAGCATGTGCCAGGCCCTGGGGCAAATCCCTAG
TACAGCAGGCTTGTGGAGAGTTGGAAAGAAAGAAAGAAGGTAGCCCAGGACTCCTATGTAGGCT
CTATCCTAATGTTATAACCAAATCATTGTTCCCTCTAACCTTGGAATAAGAGCAAAATCCTTAT
TCCAACTCTTCCTCTAACAAGCACTCTAGCTTCCAGGAGACAAGGAAAAGAAGGCTGGTTGTCT
CTGGTTATGTGACCCTGGACAGAGGGGAAATATACCATTTATCTACAATGAATTTGTGCTACTT
CAAGGTCTTCTTGCTGTCTCAGTGGAAATATTGTTTCCTTTTTCTTGTTAAACAAAATGCCTCT
AATCTACCTTCCCTCTGCCCTCCTCCCTCCTCATGTTTCCCTCCTGGGAGAGCAAGGCTCCCCA
TAGCCACACACTCCTGCAAAGCTTTTGTTGCTGCTTGGCTTTTCTCTGAACAGATCTGAAATTG
CTGCTCCTGTGGTTTCCTCAGAATTAACTTTGTCATGGTTTAAAAAAATCAGAATGCATTGTTG
CATTAAGCTTTTTTAATAAAGGAGAATTATGGAAAGAAAATAGGTAACACCAGCAAATTATATA
TTGACATTGACAAGTCTAAACATATATATATATACATATCTATGTAAAACACATATCTATACCA
ATAATCATCTAGTTCTTACTGTCATCTTACTGAAAGGAACGAAGCCTCTAAGGATCACCAGTTC
TGAGAAGCTCTTGGAAATCTTTATGTCTAAGTGATTGTATTAGATCAGCAATAATGACTATGTA
ATCTCGAAAAATAAAGTATTCTTAAAACTGAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236194 ⟹ XP_006236256

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	59,439,776 - 59,498,503 (+)	NCBI
mRatBN7.2	4	58,476,336 - 58,531,061 (+)	NCBI
Rnor_6.0	4	57,145,056 - 57,199,870 (+)	NCBI
Rnor_5.0	4	56,817,402 - 56,967,031 (+)	NCBI

Sequence:

show sequence

AATATACAAATAAGTTTTAATTGAGAGTAAACAAAAAAAGAGCAAGGAAGTTGATTTCCTTGGT
GGTAGAGCTGCTCCCTGGCTAGCCCACGGGCAGAGTGCAGCATGGGGCTTCCCGACTACTTGAC
ATCATCTTTTTCCTTCTCTTTATAAATTCCCTCATTGTTTCAGTGGGTCGTAGTTAATTTTTTT
CTAATGAGGTGAGGTTAACTAAAATCATCTGACATAGAAAAGGAGGAGGTAAAGTTAAAAGGGA
ACCTAATTAGCAAGTTAATTATATCAGGAAAAAGTGCACTGGTTATATAAATAAGCCATTGACG
TATGCATGTATGTTGGGCTTTATCTAGGGACTTGTTAAGGTTTAGAGGTCAGAGGAGCCGTGTA
ATGATGCAATAAATAAAGCCAAACTTCCAGGGTTAGGAATGGCTGACGAGCCGCTAACAGAGCT
GCCTTATTATTAAATCCGTTGTACGGCTGAAAGGGTTGCTGGAGCTGCTTCAGAGATAGCCACC
TCCCTCAAAAGGAAAAAAAAAAAAATAGAAGCAAGCTGGAACCAGAGCCAGCAGAACTGCTGAT
GAGGAAAGTTTAAAAGCCTTACTACCAGGGTCCTTGGACCAAAGAGGTGGCCTACTGCTAGTAA
TGTCACTGTCTGCTGGCTGGTAGCGTCACTATGCTGAGCAGCAAGAAGAAATACATTGTCAATA
GCAACTCTAGGATTAAAGCCCAGATTCAGTTTGCTGACCAGAAGCAGGAATTCAACAAACGTCC
CACCAAAATTGGACGTCGCTCTTTGTCTCGTTCCATCTCTCAGTCATCTACTGACAGCTACAGC
TCAGCTGCCTCATACACAGATAGCTCTGACGATGAAACATCCCCCAGGGACAAGCAGCAAAAGA
ACTCTAAGGGGAGTAGCGACTTCTGTGTCAAGAACATCAAACAAGCAGAGTTTGGACGCAGAGA
GATTGAAATTGCTGAGCAAGAGATGCCTGCCTTGATGGCTTTAAGGAAGAGAGCCCAAGGAGAA
AAGCCTTTGGCTGGAGCCAAAATCGTGGGTTGTACGCACATCACTGCTCAGACGGCTGTACTTA
TGGAGACTCTGGGTGCTCTGGGGGCACAGTGCCGATGGGCTGCCTGCAACATCTACTCCACTCT
CAATGAAGTGGCTGCTGCTCTCGCAGAAAGTGGGTTTCCCGTCTTTGCCTGGAAAGGAGAGTCA
GAAGATGACTTTTGGTGGTGCATTGACAGATGCGTGAATGTGGAAGGTTGGCAGCCAAACATGA
TCTTGGATGATGGAGGAGATCTTACTCACTGGATTTATAAAAAGTATCCCAACATGTTTAAGAA
AATCAAAGGCATAGTTGAGGAGAGTGTTACTGGAGTCCATAGGCTGTACCAACTGTCCAAAGCT
GGGAAGCTGTGTGTTCCAGCCATGAACGTCAATGACTCAGTCACTAAACAGAAATTTGATAACC
TCTACTGTTGCCGTGAATCTATCCTTGACGGACTTAAAAGGACAACAGATATGATGTTTGGTGG
AAAGCAAGTGGTGGTCTGTGGCTATGGAGAGGTAGGAAAGGGGTGCTGTGCTGCTCTGAAAGCC
ATGGGTTCCGTCGTGTACGTAACTGAAATTGATCCCATCTGTGCCCTGCAAGCCTGTATGGATG
GATTTCGACTAGTGAAGCTAAATGAAGTCATCCGGCAAGTGGACATTGTTATTACTTGTACAGG
GAACAAGAACGTGGTAACCAGAGAGCACTTGGACCGTATGAAGAATAGCTGCATCGTTTGTAAC
ATGGGACATTCCAACACTGAGATTGATGTGGCCAGCCTGCGGACCCCAGAACTGACCTGGGAGA
GAGTAAGATCCCAAGTTGACCATGTGATATGGCCTGATGGCAAGAGGATAGTACTGCTGGCAGA
GGGCCGTCTGCTGAATCTCAGCTGCTCCACAGTGCCTACCTTTGTGCTCTCAATCACCGCTACC
ACTCAGGCTCTCGCCTTGATAGAACTTTACAACGCTCCTGAGGGTCGCTATAAGCAAGATGTGT
ACCTGCTGCCCAAGAAGATGGATGAGTATGTGGCAAGCCTACACCTGCCCACCTTTGATGCCCA
CCTGACAGAGCTGACAGACGAGCAAGCCAAGTATCTGGGACTCAACAAGAATGGACCCTTCAAG
CCTAATTACTACAGGTATTAAGTTCCTGTAATGCAAACCAGAAGACATGTTAAGGAATAGAACC
AAGCCTTTTCTCCACTACTATCCAAGGAAGAACCCAGCAAGCTGCTTCTCCAATCAGAGCTGCC
CGCCGTGCTCATCCTATGTGTTAGGTTATTTATTTATTAAACTCTAAAGTCCTGTGCCTGTAGC
CTTGGCCCAGAGTGTGGTTACTACTCCTGGGGCCGTGAGAGCCACAGAGGACAGGAAGGAAAGA
AATGGGCCAACCATTCCTAGTGCATCATTCGCATTATTGCCCATTAGTGGAGTCCTCAGCGATG
GCCATTTTTCTTTCCAGGCTCAGGAGTTAGTTCAGGGATGCCAGACTCCTTGTTACTTAGGGTT
TTCTGGAATAAATTTCAGCAGCTGCCTTTCTCAAAGCTTTGGTCCTTTCCCAGGTGAGGCCTTT
TGGAAGCCACTGAATTAACAAGGCCTGAATCCACAGCCTTGATAGTTACTGTCACTGCCTTCCT
TACAAAAAGGCTGGTGAGGCAGGAGTGGTAAGGTCTTGTAAGCTGCACCAAGAACTCAGCTGTG
CCTGTATCCGTGCCTACTGGGACTTCTTCTCTTACCCAGGACTCCTTTCTTCTCCTTGAATACT
ATATCCATTTCAATGCTTTCTGTTTCTAAGAGGGTTGTGACTCCACGATCTTAACAGCTCTGCT
GTTGGCCAGGCATTTGTTTTGCTTTCTAACCCTACTAAACTCTGCTCAGGAAGTAGCCAGCTCC
ACTGGGACCCATAGTTCTGCTTCCTTCCCATTTAACTGGACTGTTTCCTAGGAGGCCCCCCTAA
CTGGCACTGTCAGAGGAGAGCCCCTTGTGGACAGTGCTTCTGTTGTTGCCTGAAATGGCCTCTG
GAGCTGAGTCGGCAAAAGTCTTTTCCAGGAAAGACTTTGGAGCTGGGCTTCGGAAGACAGGAGA
CTGTAATGTGTATCCAGATGATGAAACCTAGTTTGAGGTCTGGAGGTTAGCTCAGTGGTAGAGC
CCTTGCCTGGCATGGATAAGGCTGTGTGCTCGATCATTGGGAACTCGGGAAAGGGATGGGCACT
AGTTTGAACCTCATCAGACATCCATCCCTTTGGCTGTTGGCCGTGGTGAAAGTGAGATCTGCAA
TCTGATAGCTTATCTTTCTTTGCTGCTGCTGCATTGTTATGATCTGGCCCCTCTGTTTAAGGAT
TCTGTTTCAGAGAGTTTCTTAAGTAACTCCAGCATTATAAAATAGTAATGTAAACAGTGTGAAG
TTTCTCATTCTACCCAGGAGTTGGATTTTCTTTGGAGATGGACTGAACAGTTTCAAGGTTTCCA
CTGGGATCAGTTGGTTTCAAGAATTAAAACCTGGAGTGACCCTAGGAATCTTGAGCTGAATGAG
TCCCTCTCATGCCCCCCTATTTAGAAGTCTCCAGTTTGTTTCCCATGTCTCTCTTACATTGTTC
TGCTGTAAAGTCTCAAGATCAAGGTCATTCAAACAGAGGACAGCCAGAATCACTAAAATCTTCA
ACTAGATCTTCTCCCCTGGCTACACCATCTCCACTGTCTCTTGGTGTTTATGTGTGCCCCGGAA
GCTAGTCTGGAAGTGTCCTTATTTTCTAAGCTAGGGAAACAGAACTGGGTAAGTGGCTGTTTAC
CTTATGAAATGGTATACATTCCAGCTCACCCCAGAAGATGTACTCTAAACAGGGCATGTCTGTG
GCTGTATTCTGTTGTGCAAGGAAGATCACAAACACTGAAGAGTTCACCAAGATAGTCAGTCCTG
ATTTGTGTGTGAATAGAATGCTCACTCTCCCACTCCCACCCCGTGTTGGTTTTTTGTTATTGTT
GTTGGGGTTTGTTGTTATTTTGAGATAGTCTCACTCTGTAACCCAGGCTGGACTCAAAGTCATG
GCAGTCCTCCTGCCTTGGCCTCCTGAGGCCATGTGCTACCGTGCCTGGCCTCTTAATTGGATCT
GTTTAGCAAAGATTCATATCTCCGTGCCTCATCTCCAGAGCAGATTCCATTAGGCAGATATCTG
GCTAGGGACACCCAGGTCATAACTTGGTGATTTTTTGCAAAGTCTTGCTCTCTACAGAGCTTCC
TCTGGCTGGTACTTACACACTACACTATGCCACACCATAGAGAAGAGATCTGCTCAAAAAAAAA
AAAAAGCCATGTGGGTTTCTAAGTTAAGTTGCACCTGGCTGCCCATTGTGAGGTATCTGCCTGT
GAGTTGCAGATGACATCTGTTCCCTTTTCTCTGGAGACCTCTTTGTCATCAACCATTAAGAAAA
TAGCCAGAAATAGGGATATAAGTCAGTGATAGGACACTTGATTAGCATGTGCCAGGCCCTGGGG
CAAATCCCTAGTACAGCAGGCTTGTGGAGAGTTGGAAAGAAAGAAAGAAGGTAGCCCAGGACTC
CTATGTAGGCTCTATCCTAATGTTATAACCAAATCATTGTTCCCTCTAACCTTGGAATAAGAGC
AAAATCCTTATTCCAACTCTTCCTCTAACAAGCACTCTAGCTTCCAGGAGACAAGGAAAAGAAG
GCTGGTTGTCTCTGGTTATGTGACCCTGGACAGAGGGGAAATATACCATTTATCTACAATGAAT
TTGTGCTACTTCAAGGTCTTCTTGCTGTCTCAGTGGAAATATTGTTTCCTTTTTCTTGTTAAAC
AAAATGCCTCTAATCTACCTTCCCTCTGCCCTCCTCCCTCCTCATGTTTCCCTCCTGGGAGAGC
AAGGCTCCCCATAGCCACACACTCCTGCAAAGCTTTTGTTGCTGCTTGGCTTTTCTCTGAACAG
ATCTGAAATTGCTGCTCCTGTGGTTTCCTCAGAATTAACTTTGTCATGGTTTAAAAAAATCAGA
ATGCATTGTTGCATTAAGCTTTTTTAATAAAGGAGAATTATGGAAAGAAAATAGGTAACACCAG
CAAATTATATATTGACATTGACAAGTCTAAACATATATATATATACATATCTATGTAAAACACA
TATCTATACCAATAATCATCTAGTTCTTACTGTCATCTTACTGAAAGGAACGAAGCCTCTAAGG
ATCACCAGTTCTGAGAAGCTCTTGGAAATCTTTATGTCTAAGTGATTGTATTAGATCAGCAATA
ATGACTATGTAATCTCGAAAAATAAAGTATTCTTAAAACTGA

hide sequence

RefSeq Acc Id:

XM_008762771 ⟹ XP_008760993

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	59,382,710 - 59,498,503 (+)	NCBI
mRatBN7.2	4	58,470,791 - 58,531,061 (+)	NCBI
Rnor_6.0	4	57,139,367 - 57,199,870 (+)	NCBI

Sequence:

show sequence

CAGTCAGCATTGTGCTGTTTCTTTAACAAAGGCCCCTTAGACCTACCTTCCTGTGCCATCTCTC
AGGGAGCCAGCAGAGGGAGCTGTGGTCCCAAAACTTTTTTCAACATTACAAGTTTTAGCTTTGC
AAAAAAAAAAATCTTCCCTGACTTCATCTGAACCCCGATGCAATAAGAATTTAACCTAAGATAG
GTGGTGGTGCCAGCCCCCTGATGGAGCAGACAGGGAGCTTCTGTAGCTGCTTGAACTTGACAGC
CATAAGGAACTCTGGTTTCAAGGAAACGCCTGTTTACTGTACTGATCCAAATCAGCAGCTCTCA
AGAAAGGGGAGTGCCTTCTTGACCCCGATCTTTATTGATCTTGGTATCAGCACTTCCAGTGACG
TGTCCTGACGGGGCGGGAGAAAGTTAACTAGGGCCTTATACTCAGAGAAGAGAGCCAGCCTGTT
GCTGAAGGAAGTCCGCACAGAGGAGATAGGCTAGAGTGCCTTGTAGGAACTGCAGTGCATCCGC
TCTGATTTTGAATAACAGGCAGAGGTTTTGAGGTTGGCTGGTAAGAGATTCGCCAGGCGGTTGG
TGATCTTGATTTCAACAGGAAGCTTCTGTGAAAGATAAGAGCTTCTTTTAACCCCTGACCACTA
AGCTGGTAGTGTTCTCTGGGGTCCTCAGGTAACCCTGGCCTTTGCAAACCAGCTTTCCGTTTTG
CTTCAGGACACCCCTTAGCCAAGCCCGCACTATGGAGAAGTGGGACGGTAATGAGGGCACCTCT
GCTTTCCACATGCCTGAGTGGATGATTCAGTTTGCTGACCAGAAGCAGGAATTCAACAAACGTC
CCACCAAAATTGGACGTCGCTCTTTGTCTCGTTCCATCTCTCAGTCATCTACTGACAGCTACAG
CTCAGCTGCCTCATACACAGATAGCTCTGACGATGAAACATCCCCCAGGGACAAGCAGCAAAAG
AACTCTAAGGGGAGTAGCGACTTCTGTGTCAAGAACATCAAACAAGCAGAGTTTGGACGCAGAG
AGATTGAAATTGCTGAGCAAGAGATGCCTGCCTTGATGGCTTTAAGGAAGAGAGCCCAAGGAGA
AAAGCCTTTGGCTGGAGCCAAAATCGTGGGTTGTACGCACATCACTGCTCAGACGGCTGTACTT
ATGGAGACTCTGGGTGCTCTGGGGGCACAGTGCCGATGGGCTGCCTGCAACATCTACTCCACTC
TCAATGAAGTGGCTGCTGCTCTCGCAGAAAGTGGGTTTCCCGTCTTTGCCTGGAAAGGAGAGTC
AGAAGATGACTTTTGGTGGTGCATTGACAGATGCGTGAATGTGGAAGGTTGGCAGCCAAACATG
ATCTTGGATGATGGAGGAGATCTTACTCACTGGATTTATAAAAAGTATCCCAACATGTTTAAGA
AAATCAAAGGCATAGTTGAGGAGAGTGTTACTGGAGTCCATAGGCTGTACCAACTGTCCAAAGC
TGGGAAGCTGTGTGTTCCAGCCATGAACGTCAATGACTCAGTCACTAAACAGAAATTTGATAAC
CTCTACTGTTGCCGTGAATCTATCCTTGACGGACTTAAAAGGACAACAGATATGATGTTTGGTG
GAAAGCAAGTGGTGGTCTGTGGCTATGGAGAGGTAGGAAAGGGGTGCTGTGCTGCTCTGAAAGC
CATGGGTTCCGTCGTGTACGTAACTGAAATTGATCCCATCTGTGCCCTGCAAGCCTGTATGGAT
GGATTTCGACTAGTGAAGCTAAATGAAGTCATCCGGCAAGTGGACATTGTTATTACTTGTACAG
GGAACAAGAACGTGGTAACCAGAGAGCACTTGGACCGTATGAAGAATAGCTGCATCGTTTGTAA
CATGGGACATTCCAACACTGAGATTGATGTGGCCAGCCTGCGGACCCCAGAACTGACCTGGGAG
AGAGTAAGATCCCAAGTTGACCATGTGATATGGCCTGATGGCAAGAGGATAGTACTGCTGGCAG
AGGGCCGTCTGCTGAATCTCAGCTGCTCCACAGTGCCTACCTTTGTGCTCTCAATCACCGCTAC
CACTCAGGCTCTCGCCTTGATAGAACTTTACAACGCTCCTGAGGGTCGCTATAAGCAAGATGTG
TACCTGCTGCCCAAGAAGATGGATGAGTATGTGGCAAGCCTACACCTGCCCACCTTTGATGCCC
ACCTGACAGAGCTGACAGACGAGCAAGCCAAGTATCTGGGACTCAACAAGAATGGACCCTTCAA
GCCTAATTACTACAGGTATTAAGTTCCTGTAATGCAAACCAGAAGACATGTTAAGGAATAGAAC
CAAGCCTTTTCTCCACTACTATCCAAGGAAGAACCCAGCAAGCTGCTTCTCCAATCAGAGCTGC
CCGCCGTGCTCATCCTATGTGTTAGGTTATTTATTTATTAAACTCTAAAGTCCTGTGCCTGTAG
CCTTGGCCCAGAGTGTGGTTACTACTCCTGGGGCCGTGAGAGCCACAGAGGACAGGAAGGAAAG
AAATGGGCCAACCATTCCTAGTGCATCATTCGCATTATTGCCCATTAGTGGAGTCCTCAGCGAT
GGCCATTTTTCTTTCCAGGCTCAGGAGTTAGTTCAGGGATGCCAGACTCCTTGTTACTTAGGGT
TTTCTGGAATAAATTTCAGCAGCTGCCTTTCTCAAAGCTTTGGTCCTTTCCCAGGTGAGGCCTT
TTGGAAGCCACTGAATTAACAAGGCCTGAATCCACAGCCTTGATAGTTACTGTCACTGCCTTCC
TTACAAAAAGGCTGGTGAGGCAGGAGTGGTAAGGTCTTGTAAGCTGCACCAAGAACTCAGCTGT
GCCTGTATCCGTGCCTACTGGGACTTCTTCTCTTACCCAGGACTCCTTTCTTCTCCTTGAATAC
TATATCCATTTCAATGCTTTCTGTTTCTAAGAGGGTTGTGACTCCACGATCTTAACAGCTCTGC
TGTTGGCCAGGCATTTGTTTTGCTTTCTAACCCTACTAAACTCTGCTCAGGAAGTAGCCAGCTC
CACTGGGACCCATAGTTCTGCTTCCTTCCCATTTAACTGGACTGTTTCCTAGGAGGCCCCCCTA
ACTGGCACTGTCAGAGGAGAGCCCCTTGTGGACAGTGCTTCTGTTGTTGCCTGAAATGGCCTCT
GGAGCTGAGTCGGCAAAAGTCTTTTCCAGGAAAGACTTTGGAGCTGGGCTTCGGAAGACAGGAG
ACTGTAATGTGTATCCAGATGATGAAACCTAGTTTGAGGTCTGGAGGTTAGCTCAGTGGTAGAG
CCCTTGCCTGGCATGGATAAGGCTGTGTGCTCGATCATTGGGAACTCGGGAAAGGGATGGGCAC
TAGTTTGAACCTCATCAGACATCCATCCCTTTGGCTGTTGGCCGTGGTGAAAGTGAGATCTGCA
ATCTGATAGCTTATCTTTCTTTGCTGCTGCTGCATTGTTATGATCTGGCCCCTCTGTTTAAGGA
TTCTGTTTCAGAGAGTTTCTTAAGTAACTCCAGCATTATAAAATAGTAATGTAAACAGTGTGAA
GTTTCTCATTCTACCCAGGAGTTGGATTTTCTTTGGAGATGGACTGAACAGTTTCAAGGTTTCC
ACTGGGATCAGTTGGTTTCAAGAATTAAAACCTGGAGTGACCCTAGGAATCTTGAGCTGAATGA
GTCCCTCTCATGCCCCCCTATTTAGAAGTCTCCAGTTTGTTTCCCATGTCTCTCTTACATTGTT
CTGCTGTAAAGTCTCAAGATCAAGGTCATTCAAACAGAGGACAGCCAGAATCACTAAAATCTTC
AACTAGATCTTCTCCCCTGGCTACACCATCTCCACTGTCTCTTGGTGTTTATGTGTGCCCCGGA
AGCTAGTCTGGAAGTGTCCTTATTTTCTAAGCTAGGGAAACAGAACTGGGTAAGTGGCTGTTTA
CCTTATGAAATGGTATACATTCCAGCTCACCCCAGAAGATGTACTCTAAACAGGGCATGTCTGT
GGCTGTATTCTGTTGTGCAAGGAAGATCACAAACACTGAAGAGTTCACCAAGATAGTCAGTCCT
GATTTGTGTGTGAATAGAATGCTCACTCTCCCACTCCCACCCCGTGTTGGTTTTTTGTTATTGT
TGTTGGGGTTTGTTGTTATTTTGAGATAGTCTCACTCTGTAACCCAGGCTGGACTCAAAGTCAT
GGCAGTCCTCCTGCCTTGGCCTCCTGAGGCCATGTGCTACCGTGCCTGGCCTCTTAATTGGATC
TGTTTAGCAAAGATTCATATCTCCGTGCCTCATCTCCAGAGCAGATTCCATTAGGCAGATATCT
GGCTAGGGACACCCAGGTCATAACTTGGTGATTTTTTGCAAAGTCTTGCTCTCTACAGAGCTTC
CTCTGGCTGGTACTTACACACTACACTATGCCACACCATAGAGAAGAGATCTGCTCAAAAAAAA
AAAAAAGCCATGTGGGTTTCTAAGTTAAGTTGCACCTGGCTGCCCATTGTGAGGTATCTGCCTG
TGAGTTGCAGATGACATCTGTTCCCTTTTCTCTGGAGACCTCTTTGTCATCAACCATTAAGAAA
ATAGCCAGAAATAGGGATATAAGTCAGTGATAGGACACTTGATTAGCATGTGCCAGGCCCTGGG
GCAAATCCCTAGTACAGCAGGCTTGTGGAGAGTTGGAAAGAAAGAAAGAAGGTAGCCCAGGACT
CCTATGTAGGCTCTATCCTAATGTTATAACCAAATCATTGTTCCCTCTAACCTTGGAATAAGAG
CAAAATCCTTATTCCAACTCTTCCTCTAACAAGCACTCTAGCTTCCAGGAGACAAGGAAAAGAA
GGCTGGTTGTCTCTGGTTATGTGACCCTGGACAGAGGGGAAATATACCATTTATCTACAATGAA
TTTGTGCTACTTCAAGGTCTTCTTGCTGTCTCAGTGGAAATATTGTTTCCTTTTTCTTGTTAAA
CAAAATGCCTCTAATCTACCTTCCCTCTGCCCTCCTCCCTCCTCATGTTTCCCTCCTGGGAGAG
CAAGGCTCCCCATAGCCACACACTCCTGCAAAGCTTTTGTTGCTGCTTGGCTTTTCTCTGAACA
GATCTGAAATTGCTGCTCCTGTGGTTTCCTCAGAATTAACTTTGTCATGGTTTAAAAAAATCAG
AATGCATTGTTGCATTAAGCTTTTTTAATAAAGGAGAATTATGGAAAGAAAATAGGTAACACCA
GCAAATTATATATTGACATTGACAAGTCTAAACATATATATATATACATATCTATGTAAAACAC
ATATCTATACCAATAATCATCTAGTTCTTACTGTCATCTTACTGAAAGGAACGAAGCCTCTAAG
GATCACCAGTTCTGAGAAGCTCTTGGAAATCTTTATGTCTAAGTGATTGTATTAGATCAGCAAT
AATGACTATGTAATCTCGAAAAATAAAGTATTCTTAAAACTGA

hide sequence

RefSeq Acc Id:

XM_063285980 ⟹ XP_063142050

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	59,433,651 - 59,498,503 (+)	NCBI

RefSeq Acc Id:

XM_063285981 ⟹ XP_063142051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	59,382,837 - 59,498,503 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001166981	(Get FASTA)	NCBI Sequence Viewer
	XP_006236256	(Get FASTA)	NCBI Sequence Viewer
	XP_008760993	(Get FASTA)	NCBI Sequence Viewer
	XP_063142050	(Get FASTA)	NCBI Sequence Viewer
	XP_063142051	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM15234	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025165.8
	ENSRNOP00000078402
	ENSRNOP00000078402.1
	ENSRNOP00000087181
	ENSRNOP00000087181.1
	ENSRNOP00000091272
	ENSRNOP00000091272.1
	ENSRNOP00000108445

RefSeq Acc Id:

NP_001166981 ⟸ NM_001173510

- UniProtKB:

D3ZWL6 (UniProtKB/TrEMBL), A6IEE7 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSVQVVSAAAAAKVPEVELKDLSPSEAEPQLGLSTATVGAMVPPAGGGDPEAPAPAPAAERPPA
PGPGSGPTAALSPAAGKVPQASAMKRSDPHHQHQRHRDGGEALVSPDGTVTEAPRTVKKIQFAD
QKQEFNKRPTKIGRRSLSRSISQSSTDSYSSAASYTDSSDDETSPRDKQQKNSKGSSDFCVKNI
KQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRW
AACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPNMILDDGGDLTHWIY
KKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDNLYCCRESILDGLK
RTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSVVYVTEIDPICALQACMDGFRLVKLNEVIRQ
VDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQVDHVIWPD
GKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVAS
LHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY

hide sequence

RefSeq Acc Id:	XP_006236256 ⟸ XM_006236194
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7Z2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLSSKKKYIVNSNSRIKAQIQFADQKQEFNKRPTKIGRRSLSRSISQSSTDSYSSAASYTDSSD DETSPRDKQQKNSKGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVG CTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDR CVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNV NDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSVVYVTEI DPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDV ASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELY NAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY hide sequence

RefSeq Acc Id:	XP_008760993 ⟸ XM_008762771
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABA9 (UniProtKB/TrEMBL), A0A8I6A7Z2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MEKWDGNEGTSAFHMPEWMIQFADQKQEFNKRPTKIGRRSLSRSISQSSTDSYSSAASYTDSSD DETSPRDKQQKNSKGSSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVG CTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDR CVNVEGWQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNV NDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSVVYVTEI DPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDV ASLRTPELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCSTVPTFVLSITATTQALALIELY NAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYRY hide sequence

Ensembl Acc Id:

ENSRNOP00000025165 ⟸ ENSRNOT00000025165

Ensembl Acc Id:

ENSRNOP00000078402 ⟸ ENSRNOT00000102598

Ensembl Acc Id:

ENSRNOP00000087181 ⟸ ENSRNOT00000109374

Ensembl Acc Id:

ENSRNOP00000091272 ⟸ ENSRNOT00000100143

RefSeq Acc Id:	XP_063142051 ⟸ XM_063285981
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZKU2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063142050 ⟸ XM_063285980
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6ABA9 (UniProtKB/TrEMBL), A0A8I6A7Z2 (UniProtKB/TrEMBL)

Protein Domains

S-adenosyl-L-homocysteine hydrolase NAD binding

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZWL6-F1-model_v2	AlphaFold	D3ZWL6	1-612	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692930

Promoter ID:

EPDNEW_R3455

Type:

initiation region

Name:

Ahcyl2_1

Description:

adenosylhomocysteinase-like 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	57,050,228 - 57,050,288	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564895	AgrOrtholog
BioCyc Gene	G2FUF-45379	BioCyc
BioCyc Pathway	METHIONINE-DEG1-PWY [L-methionine degradation I (to L-homocysteine)]	BioCyc
	PWY-5041 [S-adenosyl-L-methionine salvage II]	BioCyc
BioCyc Pathway Image	METHIONINE-DEG1-PWY	BioCyc
	PWY-5041	BioCyc
Ensembl Genes	ENSRNOG00000039300	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025165.8	UniProtKB/TrEMBL
	ENSRNOT00000100143	ENTREZGENE
	ENSRNOT00000100143.1	UniProtKB/TrEMBL
	ENSRNOT00000102598	ENTREZGENE
	ENSRNOT00000102598.1	UniProtKB/TrEMBL
	ENSRNOT00000109374	ENTREZGENE
	ENSRNOT00000109374.1	UniProtKB/TrEMBL
	ENSRNOT00000133936	ENTREZGENE
Gene3D-CATH	3.40.50.1480	UniProtKB/TrEMBL
	NAD(P)-binding Rossmann-like Domain	UniProtKB/TrEMBL
InterPro	Adenosylhomocyst_ase-like_sf	UniProtKB/TrEMBL
	Ado_hCys_hydrolase_NAD-bd	UniProtKB/TrEMBL
	NAD(P)-bd_dom_sf	UniProtKB/TrEMBL
	S-Ado-L-homoCys_hydrolase	UniProtKB/TrEMBL
	S-Ado-L-homoCys_hydrolase_CS	UniProtKB/TrEMBL
KEGG Report	rno:312192	UniProtKB/TrEMBL
NCBI Gene	312192	ENTREZGENE
PANTHER	Ad_hcy_hydrolase	UniProtKB/TrEMBL
	ADENOSYLHOMOCYSTEINASE 3	UniProtKB/TrEMBL
Pfam	AdoHcyase	UniProtKB/TrEMBL
	AdoHcyase_NAD	UniProtKB/TrEMBL
PhenoGen	Ahcyl2	PhenoGen
PIRSF	Ad_hcy_hydrolase	UniProtKB/TrEMBL
PROSITE	ADOHCYASE_1	UniProtKB/TrEMBL
	ADOHCYASE_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000039300	RatGTEx
SMART	AdoHcyase	UniProtKB/TrEMBL
	AdoHcyase_NAD	UniProtKB/TrEMBL
Superfamily-SCOP	Formate/glycerate dehydrogenase catalytic domain-like	UniProtKB/TrEMBL
	SSF51735	UniProtKB/TrEMBL
UniProt	A0A8I5ZKU2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A7Z2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ABA9	ENTREZGENE, UniProtKB/TrEMBL
	A6IEE7	ENTREZGENE, UniProtKB/TrEMBL
	D3ZWL6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2009-09-17	Ahcyl2	adenosylhomocysteinase-like 2	Ahcyl2	S-adenosylhomocysteine hydrolase-like 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-07	Ahcyl2	S-adenosylhomocysteine hydrolase-like 2	RGD1564895_predicted	similar to RIKEN cDNA 4631427C17 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564895_predicted	similar to RIKEN cDNA 4631427C17 (predicted)	LOC312192	similar to RIKEN cDNA 4631427C17	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC312192	similar to RIKEN cDNA 4631427C17			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

BioCyc Pathways