Snd1 (staphylococcal nuclease and tudor domain containing 1) - Rat Genome Database

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Gene: Snd1 (staphylococcal nuclease and tudor domain containing 1) Rattus norvegicus
Symbol: Snd1
Name: staphylococcal nuclease and tudor domain containing 1
RGD ID: 631340
Description: Predicted to enable RISC complex binding activity; RNA binding activity; and RNA endonuclease activity. Predicted to be involved in mRNA catabolic process; miRNA catabolic process; and regulation of cell cycle process. Predicted to be located in dense body. Predicted to be part of RISC complex. Predicted to be active in cytosol and nucleus. Orthologous to human SND1 (staphylococcal nuclease and tudor domain containing 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 100 kDa coactivator; p100 co-activator; p105 coactivator; SND p102; staphylococcal nuclease domain containing 1; staphylococcal nuclease domain-containing protein 1; U83883
RGD Orthologs
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.2457,095,205 - 57,494,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl457,095,208 - 57,530,843 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx462,078,458 - 62,478,049 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0457,994,397 - 58,393,503 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0456,396,509 - 56,796,112 (+)NCBIRnor_WKY
Rnor_6.0455,772,377 - 56,171,669 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl455,772,377 - 56,171,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0455,519,828 - 55,919,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4455,350,745 - 55,761,185 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1455,601,827 - 56,012,017 (+)NCBI
Celera452,206,130 - 52,605,087 (+)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)

Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dinitrotoluene  (EXP)
3',5'-cyclic UMP  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (EXP)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bexarotene  (EXP)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
buspirone  (EXP)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chloropicrin  (ISO)
cisplatin  (ISO)
clobetasol  (ISO)
clofibrate  (ISO)
clofibric acid  (EXP)
cocaine  (EXP)
coumarin  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
dioxygen  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (ISO)
fluoxetine  (EXP)
folic acid  (ISO)
fulvestrant  (ISO)
glafenine  (EXP)
ivermectin  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lead(2+)  (ISO)
methapyrilene  (ISO)
methidathion  (ISO)
methylseleninic acid  (ISO)
N-nitrosodiethylamine  (EXP)
oxaliplatin  (EXP)
paracetamol  (ISO)
phenethyl caffeate  (EXP)
phenobarbital  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
senecionine  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP,ISO)
sulforaphane  (ISO)
sunitinib  (ISO)
tetrachloromethane  (ISO)
thapsigargin  (EXP,ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
topotecan  (EXP)
triptonide  (ISO)
trovafloxacin  (EXP,ISO)
tungsten  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA,ISO)
cytosol  (IBA,ISO)
dense body  (ISO)
melanosome  (IEA)
nucleus  (IBA,ISO)
RISC complex  (IEA)

Molecular Function


References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Assignment of SND1, the gene encoding coactivator p100, to human chromosome 7q31.3 and rat chromosome 4q23 by in situ hybridization. Lienard P, etal., Cytogenet Cell Genet 2000;90(3-4):253-4.
3. Rat ISS GO annotations from MGI mouse gene data--August 2006 MGD data from the GO Consortium
4. Synaptotagmin 11 interacts with components of the RNA-induced silencing complex RISC in clonal pancreatic beta-cells. Milochau A, etal., FEBS Lett. 2014 Jun 27;588(14):2217-22. doi: 10.1016/j.febslet.2014.05.031. Epub 2014 May 29.
5. GOA pipeline RGD automated data pipeline
6. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16210410   PMID:16798076   PMID:17341622   PMID:18453631   PMID:18614015   PMID:20458337   PMID:22658674   PMID:22681889   PMID:23376562   PMID:23571754  
PMID:25468996   PMID:28546213   PMID:30053369   PMID:31505169   PMID:35320827  


Comparative Map Data
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
mRatBN7.2457,095,205 - 57,494,501 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl457,095,208 - 57,530,843 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx462,078,458 - 62,478,049 (+)NCBIRnor_SHR
UTH_Rnor_SHRSP_BbbUtx_1.0457,994,397 - 58,393,503 (+)NCBIRnor_SHRSP
UTH_Rnor_WKY_Bbb_1.0456,396,509 - 56,796,112 (+)NCBIRnor_WKY
Rnor_6.0455,772,377 - 56,171,669 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl455,772,377 - 56,171,668 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0455,519,828 - 55,919,018 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4455,350,745 - 55,761,185 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1455,601,827 - 56,012,017 (+)NCBI
Celera452,206,130 - 52,605,087 (+)NCBICelera
Cytogenetic Map4q22NCBI
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
GRCh387127,652,194 - 128,092,593 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl7127,652,194 - 128,092,609 (+)EnsemblGRCh38hg38GRCh38
GRCh377127,292,248 - 127,732,645 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 367127,079,438 - 127,519,895 (+)NCBINCBI36Build 36hg18NCBI36
Build 347126,886,184 - 127,326,609NCBI
Celera7122,095,937 - 122,536,062 (+)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7121,653,109 - 122,093,584 (+)NCBIHuRef
CHM1_17127,225,497 - 127,665,960 (+)NCBICHM1_1
T2T-CHM13v2.07128,963,877 - 129,404,259 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27126,675,657 - 127,115,790 (+)NCBI
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
GRCm39628,480,332 - 28,935,161 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl628,475,138 - 28,935,161 (+)EnsemblGRCm39 Ensembl
GRCm38628,480,337 - 28,935,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl628,475,139 - 28,935,162 (+)EnsemblGRCm38mm10GRCm38
MGSCv37628,430,348 - 28,838,832 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36628,430,358 - 28,838,842 (+)NCBIMGSCv36mm8
Celera628,487,574 - 28,897,021 (+)NCBICelera
Cytogenetic Map6A3.3NCBI
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
ChiLan1.0 EnsemblNW_0049554798,692,674 - 9,154,272 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554798,692,674 - 9,124,504 (+)NCBIChiLan1.0ChiLan1.0
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
PanPan1.17132,302,137 - 132,738,223 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7132,302,235 - 132,738,223 (+)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v07119,647,536 - 120,084,110 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
CanFam3.1148,265,051 - 8,685,864 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,265,358 - 8,731,453 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha147,951,749 - 8,378,679 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0148,032,186 - 8,459,388 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl148,032,186 - 8,459,395 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1148,236,633 - 8,663,618 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,977,467 - 8,397,957 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0148,124,243 - 8,551,828 (-)NCBIUU_Cfam_GSD_1.0
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
HiC_Itri_2NW_02440511853,724,823 - 54,135,956 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647914,848,463 - 15,260,014 (+)EnsemblSpeTri2.0
SpeTri2.0NW_00493647914,848,438 - 15,259,735 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
Sscrofa11.1 Ensembl1820,261,476 - 20,653,590 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11820,261,473 - 20,653,621 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21821,272,313 - 21,657,281 (-)NCBISscrofa10.2Sscrofa10.2susScr3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
ChlSab1.12196,467,289 - 96,907,278 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2196,467,319 - 96,911,145 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660426,499,119 - 6,939,868 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
HetGla_female_1.0 EnsemblNW_0046247837,845,945 - 8,311,823 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247837,874,701 - 8,311,622 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Variants in Snd1
1487 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:339
Count of miRNA genes:175
Interacting mature miRNAs:217
Transcripts:ENSRNOT00000047698, ENSRNOT00000048252
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
10450818Scl76Serum cholesterol level QTL 763.60.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450821Scl77Serum cholesterol level QTL 774.10.01blood VLDL cholesterol amount (VT:0005144)blood high density lipoprotein cholesterol level (CMO:0000052)44917811657114705Rat
10450825Scl78Serum cholesterol level QTL 783.70.01blood VLDL cholesterol amount (VT:0005144)blood low density lipoprotein cholesterol level (CMO:0000053)44917811657114705Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)457114432102114432Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat

Markers in Region
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,114,432 - 57,114,705 (+)MAPPERmRatBN7.2
Rnor_6.0455,791,564 - 55,791,834NCBIRnor6.0
Rnor_5.0455,539,015 - 55,539,285UniSTSRnor5.0
RGSC_v3.4455,369,931 - 55,370,202RGDRGSC3.4
RGSC_v3.4455,369,932 - 55,370,202UniSTSRGSC3.4
RGSC_v3.1455,620,765 - 55,621,035RGD
RH 3.4 Map4304.7RGD
RH 3.4 Map4304.7UniSTS
Cytogenetic Map4q23UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,435,072 - 57,435,232 (+)MAPPERmRatBN7.2
Rnor_6.0456,112,213 - 56,112,372NCBIRnor6.0
Rnor_5.0455,859,589 - 55,859,748UniSTSRnor5.0
RGSC_v3.4455,699,803 - 55,699,962UniSTSRGSC3.4
Celera452,545,610 - 52,545,769UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map4q22UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,418,468 - 57,418,568 (+)MAPPERmRatBN7.2
Rnor_6.0456,095,609 - 56,095,708NCBIRnor6.0
Rnor_5.0455,842,985 - 55,843,084UniSTSRnor5.0
RGSC_v3.4455,683,199 - 55,683,298UniSTSRGSC3.4
Celera452,529,006 - 52,529,105UniSTS
RH 3.4 Map4302.11UniSTS
Cytogenetic Map4q23UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,096,493 - 57,096,633 (+)MAPPERmRatBN7.2
Rnor_6.0455,773,627 - 55,773,766NCBIRnor6.0
Rnor_5.0455,521,078 - 55,521,217UniSTSRnor5.0
RGSC_v3.4455,351,995 - 55,352,134UniSTSRGSC3.4
Celera452,207,380 - 52,207,519UniSTS
RH 3.4 Map4306.0UniSTS
Cytogenetic Map4q23UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,418,816 - 57,419,049 (+)MAPPERmRatBN7.2
Rnor_6.0456,095,957 - 56,096,189NCBIRnor6.0
Rnor_5.0455,843,333 - 55,843,565UniSTSRnor5.0
RGSC_v3.4455,683,547 - 55,683,779UniSTSRGSC3.4
Celera452,529,354 - 52,529,586UniSTS
RH 3.4 Map4306.3UniSTS
Cytogenetic Map4q23UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,270,003 - 57,270,163 (+)MAPPERmRatBN7.2
Rnor_6.0455,947,122 - 55,947,281NCBIRnor6.0
Rnor_5.0455,694,569 - 55,694,728UniSTSRnor5.0
Celera452,380,512 - 52,380,671UniSTS
Cytogenetic Map4q23UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,435,103 - 57,435,199 (+)MAPPERmRatBN7.2
Rnor_6.0456,112,244 - 56,112,339NCBIRnor6.0
Rnor_5.0455,859,620 - 55,859,715UniSTSRnor5.0
RGSC_v3.4455,699,834 - 55,699,929UniSTSRGSC3.4
Celera452,545,641 - 52,545,736UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map4q22UniSTS
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2457,435,855 - 57,436,803 (+)MAPPERmRatBN7.2
Rnor_6.0456,112,996 - 56,113,943NCBIRnor6.0
Rnor_5.0455,860,372 - 55,861,319UniSTSRnor5.0
RGSC_v3.4455,700,586 - 55,701,533UniSTSRGSC3.4
Celera452,546,393 - 52,547,340UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map4q22UniSTS


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
Medium 3 43 57 41 19 41 8 11 74 35 40 11 8
Low 1
Below cutoff


Reference Sequences
RefSeq Acc Id: ENSRNOT00000047698   ⟹   ENSRNOP00000041531
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl457,095,265 - 57,494,491 (+)Ensembl
Rnor_6.0 Ensembl455,772,377 - 56,171,668 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000048252   ⟹   ENSRNOP00000045936
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl457,095,208 - 57,530,843 (+)Ensembl
Rnor_6.0 Ensembl455,772,627 - 56,171,390 (+)Ensembl
RefSeq Acc Id: NM_022694   ⟹   NP_073185
RefSeq Status: VALIDATED
Rat AssemblyChrPosition (strand)Source
mRatBN7.2457,095,244 - 57,494,501 (+)NCBI
Rnor_6.0455,772,377 - 56,171,669 (+)NCBI
Rnor_5.0455,519,828 - 55,919,018 (+)NCBI
RGSC_v3.4455,350,745 - 55,761,185 (+)RGD
Celera452,206,130 - 52,605,087 (+)RGD
RefSeq Acc Id: XM_039108324   ⟹   XP_038964252
RefSeq Status:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2457,095,205 - 57,494,494 (+)NCBI
Reference Sequences
RefSeq Acc Id: NP_073185   ⟸   NM_022694
- UniProtKB: Q6IN40 (UniProtKB/Swiss-Prot),   Q66X93 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSRNOP00000041531   ⟸   ENSRNOT00000047698
RefSeq Acc Id: ENSRNOP00000045936   ⟸   ENSRNOT00000048252
RefSeq Acc Id: XP_038964252   ⟸   XM_039108324
- Peptide Label: isoform X1
Protein Domains
TNase-like   Tudor

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66X93-F1-model_v2 AlphaFold Q66X93 1-909 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13692915
Promoter ID:EPDNEW_R3440
Type:initiation region
Description:staphylococcal nuclease and tudor domain containing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database,
Experiment Methods:Single-end sequencing.
Rat AssemblyChrPosition (strand)Source
Rnor_6.0455,772,398 - 55,772,458EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:631340 AgrOrtholog
BioCyc Gene G2FUF-45418 BioCyc
Ensembl Genes ENSRNOG00000031173 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000041531 ENTREZGENE
  ENSRNOP00000041531.4 UniProtKB/TrEMBL
  ENSRNOP00000045936.4 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000047698 ENTREZGENE
  ENSRNOT00000047698.6 UniProtKB/TrEMBL
  ENSRNOT00000048252.4 UniProtKB/TrEMBL
Gene3D-CATH UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Silence_cplx_Nase-comp_TudorSN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SNase_OB-fold_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Staphylococal_nuclease_OB-fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Thermonucl_AS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tudor UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:64635 UniProtKB/Swiss-Prot
Pfam SNase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Snd1 PhenoGen
PIRSF RISC-Tudor-SN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE TNASE_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TNASE_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART SNc UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TUDOR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF50199 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A8L2QK81_RAT UniProtKB/TrEMBL
  SND1_RAT UniProtKB/Swiss-Prot
UniProt Secondary P97693 UniProtKB/Swiss-Prot
  Q6IN40 UniProtKB/Swiss-Prot

Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-25 Snd1  staphylococcal nuclease and tudor domain containing 1  Snd1  staphylococcal nuclease domain containing 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2005-07-08 Snd1  staphylococcal nuclease domain containing 1  U83883  p105 coactivator  Symbol and Name updated 1299863 APPROVED