Copg2 (COPI coat complex subunit gamma 2) - Rat Genome Database

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Gene: Copg2 (COPI coat complex subunit gamma 2) Rattus norvegicus
Analyze
Symbol: Copg2
Name: COPI coat complex subunit gamma 2
RGD ID: 1566215
Description: Predicted to enable structural molecule activity. Predicted to be involved in Golgi vesicle transport; organelle transport along microtubule; and protein secretion. Predicted to be located in COPI-coated vesicle and growth cone. Predicted to be part of COPI vesicle coat. Predicted to be active in Golgi membrane; endoplasmic reticulum; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human COPG2 (COPI coat complex subunit gamma 2); INTERACTS WITH 17beta-estradiol; benzo[a]pyrene; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: coatomer protein complex, subunit gamma 2; coatomer subunit gamma-2; gamma-2-coat protein; gamma-2-COP; hypothetical protein LOC301742; LOC301742; RGD1566215; similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP); uncharacterized protein LOC301742
RGD Orthologs
Human
Mouse
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8460,333,455 - 60,468,953 (-)NCBIGRCr8
mRatBN7.2459,366,086 - 59,501,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl459,366,086 - 59,501,618 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx464,344,115 - 64,472,464 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0460,260,299 - 60,388,646 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,662,228 - 58,790,583 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0458,064,394 - 58,195,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl458,064,833 - 58,195,143 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,823,051 - 57,951,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4457,859,156 - 57,958,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera454,464,559 - 54,595,409 (-)NCBICelera
Cytogenetic Map4q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11056392   PMID:14729954   PMID:18504258   PMID:21300694   PMID:29437892  


Genomics

Comparative Map Data
Copg2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8460,333,455 - 60,468,953 (-)NCBIGRCr8
mRatBN7.2459,366,086 - 59,501,591 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl459,366,086 - 59,501,618 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx464,344,115 - 64,472,464 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0460,260,299 - 60,388,646 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0458,662,228 - 58,790,583 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0458,064,394 - 58,195,242 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl458,064,833 - 58,195,143 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0457,823,051 - 57,951,204 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4457,859,156 - 57,958,208 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera454,464,559 - 54,595,409 (-)NCBICelera
Cytogenetic Map4q22NCBI
COPG2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387130,506,238 - 130,668,748 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7130,506,238 - 130,668,748 (-)EnsemblGRCh38hg38GRCh38
GRCh377130,146,079 - 130,353,588 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367129,933,316 - 130,004,138 (-)NCBINCBI36Build 36hg18NCBI36
Build 347129,740,032 - 129,810,823NCBI
Celera7124,941,854 - 125,101,434 (-)NCBICelera
Cytogenetic Map7q32.2NCBI
HuRef7124,508,567 - 124,669,036 (-)NCBIHuRef
CHM1_17130,079,500 - 130,287,197 (-)NCBICHM1_1
T2T-CHM13v2.07131,819,957 - 131,983,050 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27129,531,485 - 129,690,100 (-)NCBI
Copg2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39630,747,552 - 30,873,712 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl630,747,553 - 30,873,729 (-)EnsemblGRCm39 Ensembl
GRCm38630,747,554 - 30,896,815 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl630,747,554 - 30,896,794 (-)EnsemblGRCm38mm10GRCm38
MGSCv37630,698,411 - 30,700,638 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv37630,759,559 - 30,846,760 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36630,739,598 - 30,826,921 (-)NCBIMGSCv36mm8
Celera630,758,336 - 30,881,456 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.54NCBI
COPG2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26167,325,318 - 167,487,904 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1719,335,764 - 19,498,148 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07122,470,494 - 122,633,223 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17134,988,505 - 135,148,940 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7134,988,505 - 135,149,512 (-)Ensemblpanpan1.1panPan2
COPG2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1146,334,407 - 6,435,789 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl146,336,840 - 6,449,614 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha146,010,826 - 6,125,813 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0146,085,045 - 6,200,061 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl146,085,089 - 6,200,013 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1146,290,387 - 6,405,108 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0146,035,480 - 6,150,362 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0146,179,136 - 6,293,896 (+)NCBIUU_Cfam_GSD_1.0
Copg2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511824,515,387 - 24,650,218 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365794,647,946 - 4,785,336 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365794,648,006 - 4,782,815 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COPG2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1818,209,263 - 18,332,216 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11818,209,378 - 18,331,536 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21819,229,764 - 19,327,957 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COPG2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12199,142,097 - 99,300,386 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2199,138,512 - 99,300,412 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660424,089,527 - 4,258,336 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Copg2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247835,670,115 - 5,797,847 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247835,670,069 - 5,798,150 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Copg2
592 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:166
Interacting mature miRNAs:218
Transcripts:ENSRNOT00000033706
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41793350862933508Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)450119848146803430Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)45664777678882945Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)45664777678882945Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44043341485433414Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711443291360801Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45711443281266970Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42690728575585128Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)42949419581006281Rat
8552801Bw143Body weight QTL 1437.3body mass (VT:0001259)change in body weight to body weight ratio (CMO:0002216)43443048482490359Rat
8552809Vie5Viral induced encephalitis QTL 525.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)439524264116179656Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)457486946102486946Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)444463908148090542Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)444463908148090542Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)45843213392991462Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829465958103Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)444463720155883716Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)456698790126192555Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45711470578881294Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42133334362278020Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)456647873149491524Rat
619616Bp79Blood pressure QTL 790.0292arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4521460278882945Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41081417091360527Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)43950527573892441Rat
2312567Glom19Glomerulus QTL 191.90.006kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)445456990146803430Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)436303261103194984Rat
631671Iddm11Insulin dependent diabetes mellitus QTL 113.60.0012blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)45863587778886137Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)45664777678882945Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)42690728575585128Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45214602146446691Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)45664777678882945Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)432583980114627242Rat

Markers in Region
BE110063  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,365,190 - 59,365,342 (+)MAPPERmRatBN7.2
Rnor_6.0458,063,499 - 58,063,650NCBIRnor6.0
Rnor_5.0457,822,156 - 57,822,307UniSTSRnor5.0
Celera454,463,664 - 54,463,815UniSTS
RH 3.4 Map4347.3UniSTS
Cytogenetic Map4q44UniSTS
Cytogenetic Map4q22UniSTS
AW049845  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,398,760 - 59,398,859 (+)MAPPERmRatBN7.2
Rnor_6.0458,092,747 - 58,092,845NCBIRnor6.0
Rnor_5.0457,851,782 - 57,851,880UniSTSRnor5.0
Celera454,495,339 - 54,495,437UniSTS
Cytogenetic Map4q22UniSTS
Copg2as1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,365,971 - 59,366,400 (+)MAPPERmRatBN7.2
Rnor_6.0458,064,280 - 58,064,708NCBIRnor6.0
Rnor_5.0457,822,937 - 57,823,365UniSTSRnor5.0
Celera454,464,445 - 54,464,873UniSTS
Cytogenetic Map4q22UniSTS
RH127576  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,365,605 - 59,365,795 (+)MAPPERmRatBN7.2
Rnor_6.0458,063,914 - 58,064,103NCBIRnor6.0
Rnor_5.0457,822,571 - 57,822,760UniSTSRnor5.0
Celera454,464,079 - 54,464,268UniSTS
RH 3.4 Map4345.72UniSTS
Cytogenetic Map4q22UniSTS
RH130551  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,412,143 - 59,412,333 (+)MAPPERmRatBN7.2
Rnor_6.0458,106,133 - 58,106,322NCBIRnor6.0
Rnor_5.0457,865,168 - 57,865,357UniSTSRnor5.0
RGSC_v3.4457,866,304 - 57,866,493UniSTSRGSC3.4
Celera454,508,725 - 54,508,914UniSTS
RH 3.4 Map4351.5UniSTS
Cytogenetic Map4q22UniSTS
BE097790  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,389,119 - 59,389,318 (+)MAPPERmRatBN7.2
mRatBN7.2459,394,581 - 59,394,780 (+)MAPPERmRatBN7.2
Rnor_6.0458,085,033 - 58,085,231NCBIRnor6.0
Rnor_5.0457,844,067 - 57,844,265UniSTSRnor5.0
Celera454,489,008 - 54,489,206UniSTS
Celera454,487,484 - 54,487,682UniSTS
RH 3.4 Map4348.8UniSTS
Cytogenetic Map4q22UniSTS
BE111944  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,387,637 - 59,387,787 (+)MAPPERmRatBN7.2
Rnor_6.0458,083,553 - 58,083,702NCBIRnor6.0
Rnor_5.0457,842,587 - 57,842,736UniSTSRnor5.0
Celera454,486,001 - 54,486,150UniSTS
RH 3.4 Map4351.9UniSTS
Cytogenetic Map4q22UniSTS
BF402517  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,383,725 - 59,383,855 (+)MAPPERmRatBN7.2
Rnor_6.0458,082,243 - 58,082,370NCBIRnor6.0
Celera454,480,362 - 54,480,490UniSTS
RH 3.4 Map4345.22UniSTS
Cytogenetic Map4q22UniSTS
RH137477  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera454,485,190 - 54,485,386UniSTS
RH 3.4 Map4345.5UniSTS
Cytogenetic Map4q22UniSTS
RH139028  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,396,600 - 59,396,826 (+)MAPPERmRatBN7.2
Rnor_6.0458,090,587 - 58,090,812NCBIRnor6.0
Rnor_5.0457,849,622 - 57,849,847UniSTSRnor5.0
Celera454,493,179 - 54,493,404UniSTS
RH 3.4 Map4347.2UniSTS
Cytogenetic Map4q22UniSTS
RH139683  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,366,344 - 59,366,549 (+)MAPPERmRatBN7.2
Rnor_6.0458,064,653 - 58,064,857NCBIRnor6.0
Rnor_5.0457,823,310 - 57,823,514UniSTSRnor5.0
Celera454,464,818 - 54,465,022UniSTS
RH 3.4 Map4344.71UniSTS
Cytogenetic Map4q22UniSTS
RH141530  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,396,600 - 59,396,814 (+)MAPPERmRatBN7.2
Rnor_6.0458,090,587 - 58,090,800NCBIRnor6.0
Rnor_5.0457,849,622 - 57,849,835UniSTSRnor5.0
Celera454,493,179 - 54,493,392UniSTS
RH 3.4 Map4345.01UniSTS
Cytogenetic Map4q22UniSTS
RH141653  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,398,696 - 59,398,877 (+)MAPPERmRatBN7.2
Rnor_6.0458,092,683 - 58,092,863NCBIRnor6.0
Rnor_5.0457,851,718 - 57,851,898UniSTSRnor5.0
Celera454,495,275 - 54,495,455UniSTS
RH 3.4 Map4345.01UniSTS
Cytogenetic Map4q22UniSTS
AU048642  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,436,793 - 59,437,002 (+)MAPPERmRatBN7.2
Rnor_6.0458,133,216 - 58,133,424NCBIRnor6.0
Rnor_5.0457,889,870 - 57,890,078UniSTSRnor5.0
RGSC_v3.4457,891,231 - 57,891,439UniSTSRGSC3.4
Celera454,533,465 - 54,533,673UniSTS
Cytogenetic Map4q22UniSTS
RH124785  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2459,365,887 - 59,365,989 (+)MAPPERmRatBN7.2
Rnor_6.0458,064,196 - 58,064,297NCBIRnor6.0
Rnor_5.0457,822,853 - 57,822,954UniSTSRnor5.0
Celera454,464,361 - 54,464,462UniSTS
Cytogenetic Map4q22UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence


RefSeq Acc Id: ENSRNOT00000033706   ⟹   ENSRNOP00000038134
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl459,366,089 - 59,501,618 (-)Ensembl
Rnor_6.0 Ensembl458,064,833 - 58,195,143 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000097578   ⟹   ENSRNOP00000080313
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl459,366,086 - 59,500,621 (-)Ensembl
RefSeq Acc Id: NM_001106929   ⟹   NP_001100399
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8460,333,455 - 60,468,953 (-)NCBI
mRatBN7.2459,366,086 - 59,501,591 (-)NCBI
Rnor_6.0458,064,394 - 58,195,242 (-)NCBI
Rnor_5.0457,823,051 - 57,951,204 (-)NCBI
RGSC_v3.4457,859,156 - 57,958,208 (-)RGD
Celera454,464,559 - 54,595,409 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001100399 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein D4ABY2 (Get FASTA)   NCBI Sequence Viewer  
  EDM15266 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000038134
  ENSRNOP00000038134.6
  ENSRNOP00000080313.1
RefSeq Acc Id: NP_001100399   ⟸   NM_001106929
- UniProtKB: A0A0H2UHV9 (UniProtKB/TrEMBL),   A6IEH9 (UniProtKB/TrEMBL),   A0A8I5ZST5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000038134   ⟸   ENSRNOT00000033706
RefSeq Acc Id: ENSRNOP00000080313   ⟸   ENSRNOT00000097578
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ABY2-F1-model_v2 AlphaFold D4ABY2 1-715 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692941
Promoter ID:EPDNEW_R3466
Type:multiple initiation site
Name:Copg2_1
Description:coatomer protein complex, subunit gamma 2
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0458,195,198 - 58,195,258EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1566215 AgrOrtholog
BioCyc Gene G2FUF-45338 BioCyc
Ensembl Genes ENSRNOG00000011014 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033706 ENTREZGENE
  ENSRNOT00000033706.6 UniProtKB/TrEMBL
  ENSRNOT00000097578.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  2.60.40.1480 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.310.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin/coatomer_adapt-like_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clathrin_app_Ig-like_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer/calthrin_app_sub_C UniProtKB/TrEMBL
  Coatomer_g_Cpla UniProtKB/TrEMBL
  Coatomer_gsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_gsu_app_Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_gsu_app_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TBP_dom_sf UniProtKB/TrEMBL
KEGG Report rno:301742 UniProtKB/TrEMBL
NCBI Gene 301742 ENTREZGENE
PANTHER COATOMER SUBUNIT GAMMA-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10261 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adaptin_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_g_Cpla UniProtKB/TrEMBL
  COP-gamma_platf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Copg2 PhenoGen
PIRSF Coatomer_gamma_subunit UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx ENSRNOG00000011014 RatGTEx
Superfamily-SCOP SSF48371 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF49348 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55711 UniProtKB/TrEMBL
UniProt A0A0H2UHV9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZST5 ENTREZGENE, UniProtKB/TrEMBL
  A6IEH9 ENTREZGENE, UniProtKB/TrEMBL
  COPG2_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-11-11 Copg2  COPI coat complex subunit gamma 2  Copg2  coatomer protein complex, subunit gamma 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-12 Copg2  coatomer protein complex, subunit gamma 2  RGD1566215  similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1566215  similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)   RGD1566215_predicted  similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1566215_predicted  similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP) (predicted)  LOC301742  similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC301742  similar to Coatomer gamma-2 subunit (Gamma-2 coat protein) (Gamma-2 COP)      Symbol and Name status set to provisional 70820 PROVISIONAL