Hyal6 (hyaluronoglucosaminidase 6)

Functional Annotation unavailable	Annotation Distribution unavailable	Genomic Variants unavailble for Mouse Genomic Variants unavailable
Functional Annotation	Annotation Distribution	Genomic Variants

Protein-Protein Interactions unavailable	Genome Viewer unavailable	Damaging Variants unavailble for Mouse Damaging Variants unavailable
Protein-Protein Interactions	Genome Viewer	Damaging Variants

Annotation Comparison unavailable	OLGA unavailable
Annotation Comparison	OLGA	Excel (Download)

Gene Enrichment unavailable	Ortholog Finder unavailable
Gene Enrichment	Ortholog Finder

Search RGD Grant Resources Citing RGD About Us Contact Us

Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References FTP Download Submit Data

OntoMate (Literature Search) JBrowse (Genome Browser) Variant Visualizer Multi-Ontology Enrichment (MOET) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) RatMine GViewer (Genome Viewer) Overgo Probe Designer ACP Haplotyper Genome Scanner

Aging & Age-Related Disease Cancer Cardiovascular Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease

Genetic Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive

Pathways

Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

Advanced Search (OLGA)
OntoMate (Literature Search)

Gene: Hyal6 (hyaluronoglucosaminidase 6) Rattus norvegicus

Analyze

General
Array IDs
References

Symbol:

Hyal6

Name:

hyaluronoglucosaminidase 6

Description:

Predicted to have hyalurononglucosaminidase activity. Predicted to be involved in carbohydrate metabolic process. Predicted to localize to the integral component of membrane; PARTICIPATES IN glycosaminoglycan degradation pathway; .

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Also known as:

LOC500051; similar to hyaluronoglucosaminidase 2

Orthologs:

No known orthologs.

homologs ...

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Alliance orthologs ³				less info ...
Mus musculus (house mouse):	Hyal6 (hyaluronoglucosaminidase 6)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Danio rerio (zebrafish):	hyal6 (hyaluronoglucosaminidase 6)	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoFinder, OrthoInspector, PANTHER, PhylomeDB, TreeFam)
Caenorhabditis elegans (roundworm):	chhy-1	Alliance	DIOPT (Ensembl Compara, Hieranoid, InParanoid, OMA, OrthoInspector, PANTHER, PhylomeDB, TreeFam)

Latest Assembly:

Rnor_6.0 - RGSC Genome Assembly v6.0

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	4	52,129,576 - 52,142,241 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	4	51,898,504 - 51,911,206 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	51,212,495 - 51,225,160 (+)	NCBI	RGSC3.4		rn4	RGSC3.4
Celera	4	48,401,639 - 48,414,304 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation (Toggle Annotation Detail/Summary View)

Gene Ontology Annotations

Biological Process

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
carbohydrate metabolic process		IEA	UniRule:UR000759762	1600115	GO_REF:0000104	UniProt	GO_REF:0000104

Cellular Component

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
integral component of membrane		IEA	UniProtKB-KW:KW-0812	1600115	GO_REF:0000038	UniProt	GO_REF:0000038

Molecular Function

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
hyalurononglucosaminidase activity		IEA	EC:3.2.1.35	1600115	GO_REF:0000003	UniProt	GO_REF:0000003

Molecular Pathway Annotations

Imported Annotations - KEGG (archival)

Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
glycosaminoglycan degradation pathway		IEA		6907045		KEGG	rno:00531

Gene Ontology Annotations

Biological Process

carbohydrate metabolic process (IEA)

Cellular Component

integral component of membrane (IEA)

Molecular Function

hyalurononglucosaminidase activity (IEA)

Molecular Pathway Annotations

glycosaminoglycan degradation pathway (IEA)

References - curated

1.	Pipeline to import KEGG annotations from KEGG into RGD
2.	RGD automated data pipeline
3.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

RGD Disease Portals

Hyal6 has been annotated in the following RGD Disease Portals.

Aging/Age-Related Disease Pathways

Cancer Pathways

Cardiovascular Pathways

Diabetes Pathways

Hematologic Disease Pathways

Immune and Inflammatory Pathways

Neurological Pathways

Biological Process

Obesity Pathways

Renal Pathways

Respiratory Pathways

Sensory Organ Pathways

Genomics

QTLs in Region (Rnor_6.0)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
619616	Bp79	Blood pressure QTL 79		0.0292	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	4	3043231	79575658	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	3043231	145254791	Rat
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3044017	55791834	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3044017	64915903	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	3047807	55324857	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	7342404	92484039	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	7850904	182171018	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	8052189	53052189	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	8052189	53052189	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	8052189	53052189	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	8052189	53052189	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	8052189	53052189	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	8052189	53052189	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	12638974	57638974	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	16149941	61149941	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	18222187	61039065	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	23850384	169318094	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	23991721	76238799	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	23991721	76238799	Rat
1578655	Bmd11	Bone mineral density QTL 11	11		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	4	24631874	69631874	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	26654749	81874227	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	29549895	112807890	Rat
8552782	Vie1	Viral induced encephalitis QTL 1	26.4		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
8552801	Bw143	Body weight QTL 143	7.3		body mass (VT:0001259)	ratio of change in body weight to total body weight (CMO:0002216)	4	31825560	83531021	Rat
8552809	Vie5	Viral induced encephalitis QTL 5	25.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	31825560	83531021	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	33637803	61708341	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	34277932	99067150	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	36615599	145611886	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	37685175	73066691	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	37703272	75345433	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	37703272	115372927	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	39208222	84208222	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	39208247	84208247	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	42415777	87415777	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	43414605	155469929	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	43414792	146942075	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	43414792	146942075	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	46898276	145611886	Rat
10450821	Scl77	Serum cholesterol level QTL 77	4.1	0.01	blood VLDL cholesterol amount (VT:0005144)	blood high density lipoprotein cholesterol level (CMO:0000052)	4	47685694	55791834	Rat
10450825	Scl78	Serum cholesterol level QTL 78	3.7	0.01	blood VLDL cholesterol amount (VT:0005144)	blood low density lipoprotein cholesterol level (CMO:0000053)	4	47685694	55791834	Rat
10450818	Scl76	Serum cholesterol level QTL 76	3.6	0.01	blood VLDL cholesterol amount (VT:0005144)	blood high density lipoprotein cholesterol level (CMO:0000052)	4	47685694	55791834	Rat
2312567	Glom19	Glomerulus QTL 19	1.9	0.006	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	4	49906054	145611886	Rat

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	204
Count of miRNA genes:	143
Interacting mature miRNAs:	162
Transcripts:	ENSRNOT00000009435
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Sequence

Nucleotide Sequences

RefSeq Transcripts	NM_001024320	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAHX01029102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC129996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC082016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473959	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

NM_001024320 ⟹ NP_001019491

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	52,129,576 - 52,142,241 (+)	NCBI
Rnor_5.0	4	51,898,504 - 51,911,206 (+)	NCBI
RGSC_v3.4	4	51,212,495 - 51,225,160 (+)	RGD
Celera	4	48,401,639 - 48,414,304 (+)	RGD

Sequence:

show sequence

CGAGATTCTTTGGCAGTTTTTGGTTTTAACTGACTGTGTGTGTGACTAAAAGGCTGAATTTTGT
TTGCAATTTAGCTGCTGAGAATATGGCCCAATTCTTTCATAGAAGAATAGTGGTCTTAAGGAAA
TAATACTTTTTAAATGTTCATTTTTGTGCCCAAGAAAGGATGTTAGCGAACTCTACAATCAACA
ACAGATGATTGATGGCATCTCTAGTTTCTGTGTCACCCTATGCTATTCCTGTGGGAACTCTTCT
GTGTTTGGAAACAATCAAATAAACCTTTGAGTACACTTGTGTCATGCTGAAAACAACAATCCAT
GTGTAGCCAGTGGGTGGCGCAGCTTGGTGAACTGGTGCTCTTGGTTCTGGTGACTCAAGCCGCT
CTCAAACCAGCAATGCCTCCCGTGATCAAGAACCAACCTTTCAACATTTTCTGGGCTGCCCCTA
CTTTGTTTTGTAAAGATAACTTCGATGTAAATATGAATCTTCAAGCGTTCAACATCATTCCCAA
TCCCTTTGAAACCCAGAGTGGATCCACTATTGCTGTATTTTATCCAAAGGAACTGGGATATTAT
CCTTATTTCTCTGAAGATGGAATATCCTTCTACGGTGGAATACCTCAGAATGTGAACCTCTCTG
AGCACCTCAGGAAAAGCGCCAATGACATTGCGAATGCTGTCTCTTTGTGGCGATCAGAAGGACT
TGCTGTTATTGACTGGGAAGGCTGGAGGCCCCAGTGGGATAGGAATTGGGGCGGCAGAATAATA
TATAAAAACCACTCGCTAGCCTTCACTCGCCACCATCATCCTGACTGGGCCGAAACGAAAGTGA
GAACAGTTGCTCAGCAAGAATTTGAAAATGCTGGAAAAAGTTTAATGAACGTCACTCTCACGTT
GGCGTTAGAAATGAGACCAAAGCGTTTATGGGGCTTCTATCTCTATCCAGATTGCTACAATTAT
GATTACCGGATAAATCCAGAGTTCTACACAGGTAGCTGCCCAGACGATGAAATTTTCCGCAATG
ACCAGCTCATGTGGTTGTGGGAAAAGAGTGCAGCACTTTATCCTTCCATATATTTGAGTAAAAT
ATTAAAATCAGACATAAATGCACTGAAATTTGTTCATTTTCGAGTGAGAGAAGCCCTGAGAATT
GCTGAAAAGGCTAGGAAGGACTATGCTTTGCCAGTTTTTATTTTTTCCAGACCATTTTATTTGC
AAAGTATTGAAGCTTTGTCAGAGGAGGACTTAGTGCACACAATTGGTGAAAGTGCTGCATTGGG
AGCAGCAGGAATAATATTGTGGGGAGGATATGAATATTCTGATACAAAGGAGACTTGCTTATCT
TTGCAACAAACTGTTCATGGGCTATTGGGCCCCTATGCTCTCAATGTAACATCAGCAGCAAAGC
TCTGTAGTCAAAGTCTATGTAACAGCCATGGAAGATGTATTCGGAAGACCCCCGACTCCTCCTT
TTATCTGCATATGCCTGAAGATAGCCAAAAGAATTCTGTCACGAGCAAAGGTGTCAATTTTGTC
ATTTCTCCAAAAAGTAAACTGAAGGCAATAGTGAATATGAAGAATGGATTTGTGTGTCACTGTT
ACTATGGCTGGCACGGAGAGTCCTGCAGATCTCACTCTCCAAATCTCCAAAAGAACAAGGTTCC
TGCAACTGGATTTAATTTAGCAGTTTCTGTTGGCATGGCCTTATTTGTGATTCTGATGAATTTT
TTCCTATTCCCTACTACAATGGTAATTTTTCTGTAAAACACCGAAGAGAAGAAAACATTATCTT
TCTCTGATTGCAAGCCTTTTCTAAAGAACTTTTAGTTTTAAGTTTCATACACATTGTTGGTTGC
TCAGTTCATGGTGGGTAATTGGAATTCTAATCTCATGGAGATTAGAAGTTAAGGATAAACAGAC
ACGTATGATGGTGATAGTAGTCTATAGAATTAAGAGGAAACAGGTTTAAGGCATTAGGAGGTAT
TAGAAAGCACTGGAAATTTTATAAAAGATTATCACATAAGGCCTTTGTAGTGAGAAATCAGGGA
GCAGATGAATTAAGTCAACACTATCAGGGAGACAGATATTAGAGTTTTCTCCTATAATATGAGC
ACCTGGAAGGCAGAGATAGATGACAAGTTCAAGGCCAGCTTAGCTGACAAAGTGAGCTCAAGTC
AGTCAAGACAACATAGTGAGAGTTTGTCTGGGGGGCATGGTTGGGGGGATAAGGAACTAGAAAC
AAAATAGGAAAGATCCAAAAGAATGTATCTGGGAAATAAAAAAAAAAGAGCAAATCCAGAGGAA
AGGACTCTGCATTCCAGGGATTGTGAACTTTTAAATCACAACAATAACAAAAACAACAGCACCA
ACAAGAAGGACACCAATAGGATCGTCACCTATGGAGATGAAAATGACTCTTTAAATGGTCTCAT
CAAGGATTAACTTTATCCAGAGTTCATTTGTCTCATCAATATCAAAAGATAAACTTTACTAGCT
TTCTACACAATTGAATTTGTGTCAGAAATTCTTTTGTTCAGTACTTTTTGGTTTATTGAAATAC
ACTCTAACCAAACAGCCAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences

Protein RefSeqs	NP_001019491	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH82016	(Get FASTA)	NCBI Sequence Viewer
	EDM15177	(Get FASTA)	NCBI Sequence Viewer

Reference Sequences

RefSeq Acc Id:	NP_001019491 ⟸ NM_001024320
- Peptide Label:	precursor
- UniProtKB:	Q66H49 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCSQWVAQLGELVLLVLVTQAALKPAMPPVIKNQPFNIFWAAPTLFCKDNFDVNMNLQAFNIIP NPFETQSGSTIAVFYPKELGYYPYFSEDGISFYGGIPQNVNLSEHLRKSANDIANAVSLWRSEG LAVIDWEGWRPQWDRNWGGRIIYKNHSLAFTRHHHPDWAETKVRTVAQQEFENAGKSLMNVTLT LALEMRPKRLWGFYLYPDCYNYDYRINPEFYTGSCPDDEIFRNDQLMWLWEKSAALYPSIYLSK ILKSDINALKFVHFRVREALRIAEKARKDYALPVFIFSRPFYLQSIEALSEEDLVHTIGESAAL GAAGIILWGGYEYSDTKETCLSLQQTVHGLLGPYALNVTSAAKLCSQSLCNSHGRCIRKTPDSS FYLHMPEDSQKNSVTSKGVNFVISPKSKLKAIVNMKNGFVCHCYYGWHGESCRSHSPNLQKNKV PATGFNLAVSVGMALFVILMNFFLFPTTMVIFL hide sequence

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692910

Promoter ID:

EPDNEW_R3434

Type:

multiple initiation site

Name:

Hyal6_1

Description:

hyaluronoglucosaminidase 6

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	52,129,588 - 52,129,648	EPDNEW

Strain Variation

Strain Sequence Variants (Rnor 5.0)

ACI/EurMcwi (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

ACI/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Medical College of Wisconsin (Dr. Howard Jacob)

ACI/N (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BBDP/WorN (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BDIX.Cg-Tal/NemOda (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BDIX/NemOda (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BN-Lx/Cub (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BN-Lx/CubPrin (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BN/SsN (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

BN/SsNSlc (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BUF/MNa (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

BUF/N (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

COP/CrCrl (MCW & UW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob) University of Wisconsin (Dr. James Shull)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Breeder:	Charles River Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob) and UW Madison (Dr. James Shull)

Crl:SD (UDEL)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:	Provided by Barthold at al

DA/BklArbNsi (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

DOB/Oda (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/DuCrlCrlj (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/Jcl (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/NCrl (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NHsd (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NRrrc (Illumina) (KNAW)

Visual

CSV

TAB

Printer

Platform:	Illumina
Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NRrrc (SOLiD) (KNAW)

Visual

CSV

TAB

Printer

Platform:	SOLID
Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

F344/NSlc (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

F344/Stm (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

FHH/EurMcwi (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

FHH/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

FHL/EurMcwi (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

FHL/EurMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GH/OmrMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v2.3-5
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

GK/Ox (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

HTX/Kyo (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

HWY/Slc (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

IS-Tlk/Kyo (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

IS/Kyo (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

KFRS3B/Kyo (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

LE/OrlBarth (UDEL)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:	Provided by Barthold at al

LE/Stm (Illumina) (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LE/Stm (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

LE/Stm (SOLiD) (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LEC/Tj (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

LEW/Crl (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LEW/NCrl (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LH/MavRrrc (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LL/MavRrrc (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

LN/MavRrrc (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

M520/N (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

MHS/Gib (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

MNS/Gib (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

MR/N (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

NIG-III/Hok (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

RCS/Kyo (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

SBH/Ygl (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SBH/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder:	Medical College of Wisconsin
Description:	SBH/Ygl sequenced by MCW

SBN/Ygl (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SBN/Ygl (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA-0.5.8c, GATK-v1.0.6001, samtools, Picard
Breeder:	Medical College of Wisconsin
Description:	SBN/Ygl sequenced by MCW

SDLEF7/Barth (UDEL)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK (HaplotypeCaller v.3.1-1, VariantAnnotator v.3.1-1, SnpEff v.3.6)
Description:	Provided by Barthold at al

SHR/NCrlPrin (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHR/NHsd (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHR/OlaIpcv (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHR/OlaIpcvPrin (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SHRSP/Gcrc (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SR/JrHsd (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SR/JrHsd (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Breeder:	Harlan Laboratories
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

SS/Jr (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SS/JrHsdMcwi (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

SS/JrHsdMcwi (MCW)

Visual

CSV

TAB

Printer

Sequenced By:	Medical College of Wisconsin (Dr. Howard Jacob)
Platform:	Illumina HiSeq 2000
Secondary Analysis:	BWA v0.5.9-r16 and GATK v1.3-14
Description:	Provided by the Medical College of Wisconsin (Dr. Howard Jacob)

WAG/Rij (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/Gcrc (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/N (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/NCrl (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WKY/NHsd (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

WN/N (KNAW)

Visual

CSV

TAB

Printer

Secondary Analysis:	GATK
Description:	Provided by Hermsen at al

ZF (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

ZFDM (KyushuU)

Visual

CSV

TAB

Printer

Sequenced By:	Kyushu University (Dr. Mikita Suyama) Kyoto University (Dr. Takashi Kuramoto)
Platform:	Illumina NextSeq 500
Secondary Analysis:	BWA (v0.7.4), SAMtools (v.0.1.12a), Picard tools (v.1.87), GATK (v.2.5.2)
Breeder:	NBRP-Rat/Kyoto University
Description:	Target capture sequencing of exons and conserved non-coding sequences. Provided by: Dr. Mikita Suyama (Kyushu University) and Dr. Takashi Kuramoto (Kyoto University)
Publications:	Yoshihara M, etal., Genom Data. 2016 Nov 14;10:155-157. eCollection 2016 Dec.

Damaging Variants

Assembly: Rnor_5.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	51900133	51900134	C	T	snv	SBN/Ygl (MCW), SBN/Ygl (KNAW)

Assembly: Rnor_6.0

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	52131189	52131190	C	T	snv	SBN/Ygl (MCW), SBN/Ygl (RGD)

Assembly: RGSC_v3.4

Chromosome	Start Pos	End Pos	Reference Nucleotide	Variant Nucleotide	Variant Type	Strain
4	51214108	51214109	C	T	snv	SBN/Ygl (ICL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564219	AgrOrtholog
Ensembl Genes	ENSRNOG00000021695	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000009405	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009435	ENTREZGENE, UniProtKB/TrEMBL
Gene3D-CATH	3.20.20.70	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7132110	IMAGE-MGC_LOAD
InterPro	Aldolase_TIM	UniProtKB/TrEMBL
	Glyco_hydro_catalytic_core	UniProtKB/TrEMBL
	Hyaluronidase	UniProtKB/TrEMBL
KEGG Report	rno:500051	UniProtKB/TrEMBL
MGC_CLONE	MGC:94293	IMAGE-MGC_LOAD
NCBI Gene	500051	ENTREZGENE
PANTHER	Glyco_hydro_56	UniProtKB/TrEMBL
Pfam	Glyco_hydro_56	UniProtKB/TrEMBL
PhenoGen	Hyal6	PhenoGen
PIRSF	Hyaluronidase	UniProtKB/TrEMBL
PRINTS	GLHYDRLASE56	UniProtKB/TrEMBL
Superfamily-SCOP	Glyco_hydro_cat	UniProtKB/TrEMBL
UniGene	Rn.123114	ENTREZGENE
UniProt	Q66H49	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-05-19	Hyal6	hyaluronoglucosaminidase 6	LOC500051	similar to hyaluronoglucosaminidase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC500051	similar to hyaluronoglucosaminidase 2			Symbol and Name status set to provisional	70820	PROVISIONAL

More on Hyal6
	Alliance Gene
	NCBI Gene
	Ensembl Gene
	JBrowse: rn5 rn6
	NCBI Genome Data Viewer

RGD Object Information
RGD ID:	1564219
Created:	2006-02-09
Species:	Rattus norvegicus
Last Modified:	2019-04-12
Status:	ACTIVE

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.