Tnpo3 (transportin 3) - Rat Genome Database

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Gene: Tnpo3 (transportin 3) Rattus norvegicus
Analyze
Symbol: Tnpo3
Name: transportin 3
RGD ID: 1308938
Description: Predicted to enable identical protein binding activity and small GTPase binding activity. Predicted to be involved in protein import into nucleus. Predicted to be located in annulate lamellae; cytosol; and nucleus. Predicted to be active in cytoplasm. Human ortholog(s) of this gene implicated in autosomal dominant limb-girdle muscular dystrophy type 2. Orthologous to human TNPO3 (transportin 3); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol 3-benzoate; 2,6-dinitrotoluene.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC296954; transportin-3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,108,278 - 59,197,012 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl459,108,348 - 59,197,276 (-)EnsemblGRCr8
mRatBN7.2458,142,954 - 58,220,365 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,143,001 - 58,220,433 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx463,126,422 - 63,203,551 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,042,589 - 59,119,719 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,444,471 - 57,521,602 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,820,023 - 56,897,310 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,820,023 - 56,897,338 (-)Ensemblrn6Rnor6.0
Rnor_5.0456,587,184 - 56,664,471 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4456,422,446 - 56,499,733 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera453,250,776 - 53,328,057 (-)NCBICelera
RGSC_v3.1456,682,348 - 56,760,325 (-)NCBI
Cytogenetic Map4q22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
annulate lamellae  (IEA,ISO)
cytoplasm  (IBA,IEA)
cytosol  (IEA,ISO)
nuclear envelope  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Rat ISS GO annotations from GOA human gene data--August 2006 GOA data from the GO Consortium
3. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12628928   PMID:22872640   PMID:23878195   PMID:24449914   PMID:30916345   PMID:31192305   PMID:31465518  


Genomics

Comparative Map Data
Tnpo3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8459,108,278 - 59,197,012 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl459,108,348 - 59,197,276 (-)EnsemblGRCr8
mRatBN7.2458,142,954 - 58,220,365 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl458,143,001 - 58,220,433 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx463,126,422 - 63,203,551 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0459,042,589 - 59,119,719 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0457,444,471 - 57,521,602 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0456,820,023 - 56,897,310 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl456,820,023 - 56,897,338 (-)Ensemblrn6Rnor6.0
Rnor_5.0456,587,184 - 56,664,471 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4456,422,446 - 56,499,733 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera453,250,776 - 53,328,057 (-)NCBICelera
RGSC_v3.1456,682,348 - 56,760,325 (-)NCBI
Cytogenetic Map4q22NCBI
TNPO3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387128,954,185 - 129,056,193 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7128,954,180 - 129,055,173 (-)Ensemblhg38GRCh38
GRCh377128,594,239 - 128,695,165 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367128,382,184 - 128,482,434 (-)NCBIBuild 36Build 36hg18NCBI36
Build 347128,188,898 - 128,289,149NCBI
Celera7123,390,730 - 123,491,720 (-)NCBICelera
Cytogenetic Map7q32.1NCBI
HuRef7122,955,420 - 123,056,377 (-)NCBIHuRef
CHM1_17128,527,540 - 128,628,528 (-)NCBICHM1_1
T2T-CHM13v2.07130,267,070 - 130,368,954 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27127,977,977 - 128,078,965 (-)NCBI
Tnpo3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39629,540,826 - 29,609,918 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl629,540,826 - 29,609,886 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38629,540,827 - 29,609,858 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl629,540,827 - 29,609,887 (-)Ensemblmm10GRCm38
MGSCv37629,490,827 - 29,559,607 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36629,490,837 - 29,559,617 (-)NCBIMGSCv36mm8
Celera629,549,675 - 29,618,438 (-)NCBICelera
Cytogenetic Map6A3.3NCBI
cM Map612.36NCBI
Tnpo3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554799,740,805 - 9,831,339 (-)Ensembl
ChiLan1.0NW_0049554799,739,927 - 9,831,276 (-)NCBIChiLan1.0ChiLan1.0
TNPO3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26165,758,971 - 165,863,548 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1717,769,217 - 17,871,151 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07120,906,238 - 121,008,216 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17133,430,495 - 133,531,771 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7133,430,490 - 133,531,774 (-)EnsemblpanPan2panpan1.1
TNPO3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1147,639,276 - 7,722,453 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl147,639,558 - 7,722,351 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha147,326,495 - 7,409,297 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0147,405,066 - 7,488,297 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl147,405,082 - 7,489,141 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1147,610,134 - 7,693,338 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0147,352,085 - 7,435,363 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0147,497,117 - 7,580,541 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tnpo3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511825,915,334 - 26,001,614 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365796,047,351 - 6,134,583 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365796,047,900 - 6,134,211 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TNPO3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1819,572,776 - 19,673,163 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11819,572,555 - 19,673,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21820,641,615 - 20,742,751 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TNPO3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12197,554,484 - 97,654,289 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2197,553,519 - 97,653,889 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_0236660425,747,926 - 5,847,780 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tnpo3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247837,168,867 - 7,261,261 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247837,168,865 - 7,261,008 (+)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Tnpo3
535 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:341
Count of miRNA genes:192
Interacting mature miRNAs:237
Transcripts:ENSRNOT00000043902
Prediction methods:Microtar, Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41564430960644309Rat
5685012Bmd87Bone mineral density QTL 875.1tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)43511329080113290Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)439431983123203361Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44140057786400577Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44442502489425024Rat
5685009Bmd86Bone mineral density QTL 863.7tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)457613242102613242Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)44049044275726188Rat
634311Sach7Saccharin preference QTL 7taste sensitivity trait (VT:0001986)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)45807987582597589Rat
1358363Sradr3Stress Responsive Adrenal Weight QTL 36.19adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)458817672103817672Rat
61330Eau1Experimental allergic uveoretinitis QTL 10.0003uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)426234499134199155Rat
631261Tcas3Tongue tumor susceptibility QTL 36.88tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)41170660492690519Rat
61336Bp21Blood pressure QTL 214.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45808014680212111Rat
2313401Anxrr27Anxiety related response QTL 27aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)41890069763900697Rat
8655961Kidm43Kidney mass QTL 4318kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)43726957782269577Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
6909128Pancm4Pancreatic morphology QTL 411.35pancreas mass (VT:0010144)pancreas wet weight (CMO:0000626)427862204126119996Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
61475Aia2Adjuvant induced arthritis QTL 25.8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)44047145375939996Rat
8694439Bw168Body weight QTL 1689.570.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)44140060386400603Rat
61412Pia2Pristane induced arthritis QTL 23.9joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)42228845363245191Rat
8552807Vie4Viral induced encephalitis QTL 47.3brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)41890069763900697Rat
8655906Rf60Renal function QTL 603.8blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)43044896182336920Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
7387227Uae40Urinary albumin excretion QTL 402.90.0052urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)41891315163913151Rat
6909122Insul22Insulin level QTL 224.63blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)42786220462997402Rat
1558651Swd3Spike wave discharge measurement QTL 34.620.000024brain electrophysiology trait (VT:0010557)brain spike-and-wave discharge frequency (CMO:0001742)44140057786400577Rat
1358203Stl19Serum triglyceride level QTL 192.80.002blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)42192515166925151Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
1641833Alc21Alcohol consumption QTL 218.60.0001drinking behavior trait (VT:0001422)ethanol drink intake rate (CMO:0001407)457664252127749483Rat
70192BpQTLcluster5Blood pressure QTL cluster 54.183arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)4163900697Rat
1298082Stresp4Stress response QTL 4blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)451085655113588029Rat
631546Bp86Blood pressure QTL 863.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)45807987592690793Rat
1300139Hrtrt6Heart rate QTL 62.85heart pumping trait (VT:2000009)heart rate (CMO:0000002)440490442117737312Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798520Anxrr55Anxiety related response QTL 554.450.01locomotor behavior trait (VT:0001392)number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)433538597116185060Rat
4889969Bss96Bone structure and strength QTL 964.9tibia size trait (VT:0100001)tibia cortical bone volume (CMO:0001725)457613242102613242Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
4889972Bss97Bone structure and strength QTL 975.6tibia size trait (VT:0100001)tibia total bone volume (CMO:0001724)457613242102613242Rat

Markers in Region
RH128447  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8459,108,456 - 59,108,665 (+)Marker Load Pipeline
mRatBN7.2458,143,127 - 58,143,336 (+)MAPPERmRatBN7.2
Rnor_6.0456,820,132 - 56,820,340NCBIRnor6.0
Rnor_5.0456,587,293 - 56,587,501UniSTSRnor5.0
RGSC_v3.4456,422,555 - 56,422,763UniSTSRGSC3.4
Celera453,250,885 - 53,251,093UniSTS
RH 3.4 Map4303.02UniSTS
Cytogenetic Map4q22UniSTS
RH142454  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,186,780 - 58,186,882 (+)MAPPERmRatBN7.2
Rnor_6.0456,863,781 - 56,863,882NCBIRnor6.0
Rnor_5.0456,630,942 - 56,631,043UniSTSRnor5.0
RGSC_v3.4456,466,204 - 56,466,305UniSTSRGSC3.4
Celera453,294,532 - 53,294,633UniSTS
RH 3.4 Map4304.5UniSTS
Cytogenetic Map4q22UniSTS
RH141220  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map4303.12UniSTS
Cytogenetic Map4q22UniSTS
AU049162  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,149,994 - 58,150,250 (+)MAPPERmRatBN7.2
Rnor_6.0456,826,998 - 56,827,253NCBIRnor6.0
Rnor_5.0456,594,159 - 56,594,414UniSTSRnor5.0
RGSC_v3.4456,429,421 - 56,429,676UniSTSRGSC3.4
Celera453,257,751 - 53,258,006UniSTS
Cytogenetic Map4q22UniSTS
RH127018  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2458,143,750 - 58,143,967 (+)MAPPERmRatBN7.2
Rnor_6.0456,820,755 - 56,820,971NCBIRnor6.0
Rnor_5.0456,587,916 - 56,588,132UniSTSRnor5.0
RGSC_v3.4456,423,178 - 56,423,394UniSTSRGSC3.4
Celera453,251,508 - 53,251,724UniSTS
Cytogenetic Map4q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000043902   ⟹   ENSRNOP00000040222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl459,108,348 - 59,185,635 (-)Ensembl
mRatBN7.2 Ensembl458,143,001 - 58,220,332 (-)Ensembl
Rnor_6.0 Ensembl456,820,023 - 56,897,310 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000090038   ⟹   ENSRNOP00000074682
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl459,108,348 - 59,197,276 (-)Ensembl
mRatBN7.2 Ensembl458,143,001 - 58,220,433 (-)Ensembl
Rnor_6.0 Ensembl456,822,559 - 56,897,338 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105647   ⟹   ENSRNOP00000090734
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl458,206,301 - 58,220,114 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113944   ⟹   ENSRNOP00000078660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl459,108,348 - 59,185,635 (-)Ensembl
mRatBN7.2 Ensembl458,143,014 - 58,220,337 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000161952   ⟹   ENSRNOP00000110728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl459,129,724 - 59,185,635 (-)Ensembl
RefSeq Acc Id: NM_001106587   ⟹   NP_001100057
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,108,348 - 59,185,635 (-)NCBI
mRatBN7.2458,143,019 - 58,220,327 (-)NCBI
Rnor_6.0456,820,023 - 56,897,310 (-)NCBI
Rnor_5.0456,587,184 - 56,664,471 (-)NCBI
RGSC_v3.4456,422,446 - 56,499,733 (-)RGD
Celera453,250,776 - 53,328,057 (-)RGD
Sequence:
RefSeq Acc Id: XM_006236186   ⟹   XP_006236248
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,108,278 - 59,185,305 (-)NCBI
mRatBN7.2458,142,954 - 58,219,997 (-)NCBI
Rnor_6.0456,820,633 - 56,896,928 (-)NCBI
Rnor_5.0456,587,184 - 56,664,471 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039107279   ⟹   XP_038963207
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,130,112 - 59,187,670 (-)NCBI
mRatBN7.2458,164,786 - 58,220,365 (-)NCBI
RefSeq Acc Id: XM_063285739   ⟹   XP_063141809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8459,108,278 - 59,197,012 (-)NCBI
RefSeq Acc Id: NP_001100057   ⟸   NM_001106587
- UniProtKB: A6IEE3 (UniProtKB/TrEMBL),   A0A8I6G251 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006236248   ⟸   XM_006236186
- Peptide Label: isoform X3
- UniProtKB: A0A8I6G251 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000074682   ⟸   ENSRNOT00000090038
Ensembl Acc Id: ENSRNOP00000040222   ⟸   ENSRNOT00000043902
RefSeq Acc Id: XP_038963207   ⟸   XM_039107279
- Peptide Label: isoform X2
- UniProtKB: A0A8I6G251 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000078660   ⟸   ENSRNOT00000113944
Ensembl Acc Id: ENSRNOP00000090734   ⟸   ENSRNOT00000105647
RefSeq Acc Id: XP_063141809   ⟸   XM_063285739
- Peptide Label: isoform X1
- UniProtKB: A0A8I6G251 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000110728   ⟸   ENSRNOT00000161952
Protein Domains
Exportin-1/Importin-beta-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAM0-F1-model_v2 AlphaFold D4AAM0 1-923 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692927
Promoter ID:EPDNEW_R3452
Type:multiple initiation site
Name:Tnpo3_1
Description:transportin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3453  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0456,897,092 - 56,897,152EPDNEW
RGD ID:13692928
Promoter ID:EPDNEW_R3453
Type:initiation region
Name:Tnpo3_2
Description:transportin 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R3452  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0456,897,321 - 56,897,381EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1308938 AgrOrtholog
BioCyc Gene G2FUF-45389 BioCyc
Ensembl Genes ENSRNOG00000021758 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000043902 ENTREZGENE
  ENSRNOT00000043902.6 UniProtKB/TrEMBL
  ENSRNOT00000090038 ENTREZGENE
  ENSRNOT00000090038.2 UniProtKB/TrEMBL
  ENSRNOT00000105647.1 UniProtKB/TrEMBL
  ENSRNOT00000113944.1 UniProtKB/TrEMBL
  ENSRNOT00000161952 ENTREZGENE
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Exportin-1/Importin-b-like UniProtKB/TrEMBL
  Importin_beta-like_NTR UniProtKB/TrEMBL
KEGG Report rno:296954 UniProtKB/TrEMBL
NCBI Gene 296954 ENTREZGENE
PANTHER TRANSPORTIN 3 AND IMPORTIN 13 UniProtKB/TrEMBL
  TRANSPORTIN-3 UniProtKB/TrEMBL
Pfam TPR_TNPO3_IPO13_2nd UniProtKB/TrEMBL
  TPR_TNPO3_IPO13_3rd UniProtKB/TrEMBL
  TPR_TNPO3_IPO13_4th UniProtKB/TrEMBL
  Xpo1 UniProtKB/TrEMBL
PhenoGen Tnpo3 PhenoGen
RatGTEx ENSRNOG00000021758 RatGTEx
Superfamily-SCOP ARM-type_fold UniProtKB/TrEMBL
UniProt A0A0G2K8P2_RAT UniProtKB/TrEMBL
  A0A8I6AEC0_RAT UniProtKB/TrEMBL
  A0A8I6G251 ENTREZGENE, UniProtKB/TrEMBL
  A6IEE3 ENTREZGENE, UniProtKB/TrEMBL
  D4AAM0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2005-12-06 Tnpo3  transportin 3  Tnpo3_predicted  transportin 3 (predicted)  Symbol and Name updated 1559027 APPROVED
2005-01-12 Tnpo3_predicted  transportin 3 (predicted)      Symbol and Name status set to approved 70820 APPROVED