D4Rat254 Marker Search Result - Rat Genome Database

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Marker: D4Rat254

Symbol: D4Rat254
Previously known as: oxsts10975; R0303-C11; 
RGD ID: 41846
Expected Size: 235 (bp)
Position
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8454,130,061 - 54,130,296 (+)Marker Load Pipeline
mRatBN7.2453,164,510 - 53,164,745 (+)MAPPERmRatBN7.2
Rnor_6.0451,758,402 - 51,758,636NCBIRnor6.0
Rnor_5.0451,536,658 - 51,536,892UniSTSRnor5.0
RGSC_v3.4451,136,923 - 51,137,158RGDRGSC3.4
RGSC_v3.4451,136,924 - 51,137,158UniSTSRGSC3.4
RGSC_v3.1451,367,497 - 51,367,732RGD
Celera448,328,671 - 48,328,905UniSTS
RH 2.0 Map4352.5RGD
SHRSP x BN Map430.57RGD
Is Marker For: Strains:   AVN/Orl   BBDP/Rhw   BBDR/Rhw   BC/CpbU   BDIX/Han   BDVII/Cub   BN/SsNHsd   BP/Cub   BUF/Pit   DA/PitN   DON/Melb   F344/Pit   FHH/Eur   IS/Kyo   LE/Mol   LEW/Pit   LH/Mav   MHS/Gib   MNRA/N   WN/N   WKY/OlaHsd   WTC/Kyo   LOU/CHan   MNR/N   MR/Pit   ODU/N   WF/Pit   WIST/Nhg   SR/Jr   MNS/Gib   NP9   OKA/Wsl   OM/Ztm   P5C   PVG/Pit   SD/Rij   SHR/OlaHsd   SHRSP/Riv   WAG/RijKyo   GK/KyoSwe   M520/N   ACI/N   BN-Lx/Cub   LN/Mav   GH/Omr   NEDH/K   SS/Jr   COP/OlaHsd  


Annotation


#
Reference Title
Reference Citation
1. Data downloaded from Wellcome Trust, University of Oxford Data downloaded from Wellcome Trust, University of Oxford
2. Rat Genetic Map Data Rat Genetic Map Data, Whitehead Institute for Biomedical Research/MIT Center for Genome Research Website, http://waldo.wi.mit.edu/rat/public/distribution/rat_sslp_releases/jan00/
3. Electronic Transfer of SSLP Data Rat Genetic Mapping Project, Whitehead Institute for Biomedical Research. APR. 2001.
4. UniSTS Pipeline RGD automated pipelines
5. RH Map Project RH Map Project, Laboratory of Genetic Research Website, 1-JUL-99, Laboratory of Genetic Research, Medical College of Wisconsin, http://www.lgr.mcw.edu/LGR/
6. A high density integrated genetic linkage and radiation hybrid map of the laboratory rat Steen RG, Kwitek-Black AE, etal., Genome Research, 1999, 6:1-8


 
Forward Primer AGGGCTTAGCTTCAGCTTCC
Reverse Primer GTCTGATTCCTTGAGGCAGC
 
Template 
CCCACAATTCTGAAAGCAACCAGTCTGTGGCAAGGGCTTAGCTTCAGCTTCCTTTATTCAAATC
TCTGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTCTCCACTGAGCAAGA
AACCAAAAGAACACCTTACCTTTAAAAGAAATTACTGTTTCAGCTCAGTTTGTAAGTTAGACCA
ACGTCACCAGCACTCATATGAAAAGCCTGCTAGAACAGGAGATGGACGAGGCTGCTGCCTCAAG
GAATCAGACAGGTAATCTGTTTGGGAATGAAAGACAAAGAATCAGAAGCCTTTTCCCAGGCATA
TCCAGTGGGTACCGAGCTCGAATTCGTAATCATGGTCATAGCTGTTTCCTGTGTGAAATTGTTA
TCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTGTAAAGCCTGGGGTGCCTAA
TGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCCCGCTTTCCAGTCGGGAAACCTGT
CGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGGG
Strain, Expected Size(s)

ACI/N 231 AVN/Orl 231 BBDP/Rhw 231
BBDR/Rhw 231 BC/CpbU 231 BDIX/Han 231
BDVII/Cub 231 BN-Lx/Cub 235 BN/SsNHsd 235
BP/Cub 235 BUF/Pit 231 COP/OlaHsd 235
DA/PitN 231 DON/Melb 231 F344/Pit 231
FHH/Eur 231 GH/Omr 231 GK/KyoSwe 235
IS/Kyo 235 LE/Mol 231 LEW/Pit 231
LH/Mav 231 LN/Mav 231 LOU/CHan 231
M520/N 231 MHS/Gib 231 MNR/N 231
MNRA/N 231 MNS/Gib 231 MR/Pit 231
NEDH/K 235 NP9 231 ODU/N 231
OKA/Wsl 233 OM/Ztm 231 P5C 231
PVG/Pit 231 SD/Rij 231 SHR/OlaHsd 235
SHRSP/Riv 233 SR/Jr 231 SS/Jr 231
WAG/RijKyo 231 WF/Pit 235 WIST/Nhg 235
WKY/OlaHsd 231 WN/N 231 WTC/Kyo 231


GenBank Nucleotide CH473959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CM000234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


1 to 10 of 41 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
2302371Stl22Serum triglyceride level QTL 225.15blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)4521829457114705Rat
2303585Bw86Body weight QTL 864body mass (VT:0001259)body weight (CMO:0000012)41467806559678065Rat
1358352Srcrt3Stress Responsive Cort QTL 32.29blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)438465774146803430Rat
61445Strs3Sensitivity to stroke QTL 33cerebrum integrity trait (VT:0010549)post-insult time to onset of cerebrovascular lesion (CMO:0002343)44043338885433388Rat
6893678Bw108Body weight QTL 1082.60.006body mass (VT:0001259)body weight (CMO:0000012)44345797688457976Rat
8552906Pigfal3Plasma insulin-like growth factor 1 level QTL 3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)41008408955084089Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
1331807Rf31Renal function QTL 312.988urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)43952426474726312Rat
6478766Anxrr47Anxiety related response QTL 470.09637locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)41008408955084089Rat
8552782Vie1Viral induced encephalitis QTL 126.4brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)43443048482490359Rat

1 to 10 of 41 rows